Joanna C Chiu

Joanna C Chiu

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Joanna C Chiu

Joanna C Chiu

Publications by authors named "Joanna C Chiu"

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SUR-8 interacts with PP1-87B to stabilize PERIOD and regulate circadian rhythms in Drosophila.

PLoS Genet 2019 11 11;15(11):e1008475. Epub 2019 Nov 11.

Department of Biology, University of Nevada, Reno, NV, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1008475DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6874087PMC
November 2019

Splice variants of DOMINO control Drosophila circadian behavior and pacemaker neuron maintenance.

PLoS Genet 2019 10 28;15(10):e1008474. Epub 2019 Oct 28.

Department of Biology, University of Nevada Reno, Reno, NV, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1008474DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6837581PMC
October 2019

Genome-wide divergence among invasive populations of Aedes aegypti in California.

BMC Genomics 2019 Mar 12;20(1):204. Epub 2019 Mar 12.

Department of Entomology and Nematology, College of Agricultural and Environmental Sciences, University of California - Davis, Davis, CA, 95616, USA.

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http://dx.doi.org/10.1186/s12864-019-5586-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6417271PMC
March 2019

O-GlcNAcylation of PERIOD regulates its interaction with CLOCK and timing of circadian transcriptional repression.

PLoS Genet 2019 01 31;15(1):e1007953. Epub 2019 Jan 31.

Department of Entomology and Nematology, College of Agricultural and Environmental Sciences, University of California, Davis, Davis, CA, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1007953DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6372208PMC
January 2019

High throughput sequencing reveals Drosophila suzukii responses to insecticides.

Insect Sci 2018 Dec 9;25(6):928-945. Epub 2017 Aug 9.

Department of Entomology, College of Agricultural and Environmental Sciences, University of Georgia, Athens, Georgia, USA.

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http://doi.wiley.com/10.1111/1744-7917.12498
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http://dx.doi.org/10.1111/1744-7917.12498DOI Listing
December 2018

CK1α Collaborates with DOUBLETIME to Regulate PERIOD Function in the Circadian Clock.

J Neurosci 2018 12 29;38(50):10631-10643. Epub 2018 Oct 29.

Department of Entomology and Nematology, College of Agricultural and Environmental Sciences, University of California, Davis, California 95616

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http://www.jneurosci.org/lookup/doi/10.1523/JNEUROSCI.0871-1
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http://dx.doi.org/10.1523/JNEUROSCI.0871-18.2018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6290297PMC
December 2018

Guidelines for Genome-Scale Analysis of Biological Rhythms.

J Biol Rhythms 2017 Oct 3;32(5):380-393. Epub 2017 Nov 3.

27 Department of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.

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http://dx.doi.org/10.1177/0748730417728663DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5692188PMC
October 2017

OrthoReD: a rapid and accurate orthology prediction tool with low computational requirement.

BMC Bioinformatics 2017 Jun 21;18(1):310. Epub 2017 Jun 21.

Department of Plant Sciences, University of California, Davis, CA, USA.

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http://dx.doi.org/10.1186/s12859-017-1726-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5479036PMC
June 2017

Understanding the role of chromatin remodeling in the regulation of circadian transcription in Drosophila.

Fly (Austin) 2015 ;9(4):145-54

a Department of Entomology and Nematology ; University of California Davis ; Davis , CA 95616 , USA.

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http://dx.doi.org/10.1080/19336934.2016.1143993DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4862430PMC
December 2016

Oral delivery of dsRNA by microbes: Beyond pest control.

Commun Integr Biol 2016 4;9(6):e1236163. Epub 2016 Nov 4.

Department of Entomology and Nematology, College of Agricultural and Environmental Sciences, University of California , Davis, CA, USA.

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http://dx.doi.org/10.1080/19420889.2016.1236163DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5193050PMC
November 2016

Codon usage affects the structure and function of the Drosophila circadian clock protein PERIOD.

Genes Dev 2016 08;30(15):1761-75

Department of Physiology, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA;

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http://dx.doi.org/10.1101/gad.281030.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5002980PMC
August 2016

population response to environment and management strategies.

J Pest Sci (2004) 2016;89:653-665. Epub 2016 Apr 1.

Department of Horticulture, Oregon State University, 4017 Ag and Life Sciences Bldg., Corvallis, OR 97331 USA ; Department of Horticulture, Oregon State University, 4105C ALS, Corvallis, OR 97331 USA.

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http://dx.doi.org/10.1007/s10340-016-0757-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4943995PMC
April 2016

Ingestion of genetically modified yeast symbiont reduces fitness of an insect pest via RNA interference.

Sci Rep 2016 Mar 2;6:22587. Epub 2016 Mar 2.

Department of Entomology and Nematology, College of Agricultural and Environmental Sciences, University of California, Davis, CA 95616.

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http://www.nature.com/articles/srep22587
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http://dx.doi.org/10.1038/srep22587DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4773866PMC
March 2016

Seasonal cues induce phenotypic plasticity of Drosophila suzukii to enhance winter survival.

BMC Ecol 2016 Mar 22;16:11. Epub 2016 Mar 22.

Department of Entomology and Nematology, University of California, Davis, CA, 95616, USA.

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http://dx.doi.org/10.1186/s12898-016-0070-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4802914PMC
March 2016

Identification of Light-Sensitive Phosphorylation Sites on PERIOD That Regulate the Pace of Circadian Rhythms in Drosophila.

Mol Cell Biol 2015 Dec 28;36(6):855-70. Epub 2015 Dec 28.

Department of Molecular Biology and Biochemistry, Rutgers University, Center for Advanced Biotechnology and Medicine, Piscataway, New Jersey, USA

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http://dx.doi.org/10.1128/MCB.00682-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4810464PMC
December 2015

Extracting phylogenetic signal and accounting for bias in whole-genome data sets supports the Ctenophora as sister to remaining Metazoa.

BMC Genomics 2015 Nov 23;16:987. Epub 2015 Nov 23.

Department of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, USA.

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http://dx.doi.org/10.1186/s12864-015-2146-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4657218PMC
November 2015

The Catalytic and Non-catalytic Functions of the Brahma Chromatin-Remodeling Protein Collaborate to Fine-Tune Circadian Transcription in Drosophila.

PLoS Genet 2015 Jul 1;11(7):e1005307. Epub 2015 Jul 1.

Department of Entomology and Nematology, College of Agricultural and Environmental Sciences, University of California, Davis, Davis, California, United States of America.

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https://dx.plos.org/10.1371/journal.pgen.1005307
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http://dx.doi.org/10.1371/journal.pgen.1005307DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4488936PMC
July 2015

Evidence that natural selection maintains genetic variation for sleep in Drosophila melanogaster.

BMC Evol Biol 2015 Mar 13;15:41. Epub 2015 Mar 13.

Department of Evolution and Ecology, University of California, 3352 Storer Hall, One Shields Ave., Davis, CA, 95618, USA.

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http://www.biomedcentral.com/1471-2148/15/41
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http://dx.doi.org/10.1186/s12862-015-0316-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4374177PMC
March 2015

Large-scale coding sequence change underlies the evolution of postdevelopmental novelty in honey bees.

Mol Biol Evol 2015 Feb 28;32(2):334-46. Epub 2014 Oct 28.

Department of Entomology, University of California-Davis

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http://dx.doi.org/10.1093/molbev/msu292DOI Listing
February 2015

Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.

Authors:
Daniel E Neafsey Robert M Waterhouse Mohammad R Abai Sergey S Aganezov Max A Alekseyev James E Allen James Amon Bruno Arcà Peter Arensburger Gleb Artemov Lauren A Assour Hamidreza Basseri Aaron Berlin Bruce W Birren Stephanie A Blandin Andrew I Brockman Thomas R Burkot Austin Burt Clara S Chan Cedric Chauve Joanna C Chiu Mikkel Christensen Carlo Costantini Victoria L M Davidson Elena Deligianni Tania Dottorini Vicky Dritsou Stacey B Gabriel Wamdaogo M Guelbeogo Andrew B Hall Mira V Han Thaung Hlaing Daniel S T Hughes Adam M Jenkins Xiaofang Jiang Irwin Jungreis Evdoxia G Kakani Maryam Kamali Petri Kemppainen Ryan C Kennedy Ioannis K Kirmitzoglou Lizette L Koekemoer Njoroge Laban Nicholas Langridge Mara K N Lawniczak Manolis Lirakis Neil F Lobo Ernesto Lowy Robert M MacCallum Chunhong Mao Gareth Maslen Charles Mbogo Jenny McCarthy Kristin Michel Sara N Mitchell Wendy Moore Katherine A Murphy Anastasia N Naumenko Tony Nolan Eva M Novoa Samantha O'Loughlin Chioma Oringanje Mohammad A Oshaghi Nazzy Pakpour Philippos A Papathanos Ashley N Peery Michael Povelones Anil Prakash David P Price Ashok Rajaraman Lisa J Reimer David C Rinker Antonis Rokas Tanya L Russell N'Fale Sagnon Maria V Sharakhova Terrance Shea Felipe A Simão Frederic Simard Michel A Slotman Pradya Somboon Vladimir Stegniy Claudio J Struchiner Gregg W C Thomas Marta Tojo Pantelis Topalis José M C Tubio Maria F Unger John Vontas Catherine Walton Craig S Wilding Judith H Willis Yi-Chieh Wu Guiyun Yan Evgeny M Zdobnov Xiaofan Zhou Flaminia Catteruccia George K Christophides Frank H Collins Robert S Cornman Andrea Crisanti Martin J Donnelly Scott J Emrich Michael C Fontaine William Gelbart Matthew W Hahn Immo A Hansen Paul I Howell Fotis C Kafatos Manolis Kellis Daniel Lawson Christos Louis Shirley Luckhart Marc A T Muskavitch José M Ribeiro Michael A Riehle Igor V Sharakhov Zhijian Tu Laurence J Zwiebel Nora J Besansky

Science 2015 Jan 27;347(6217):1258522. Epub 2014 Nov 27.

Eck Institute for Global Health and Department of Biological Sciences, University of Notre Dame, 317 Galvin Life Sciences Building, Notre Dame, IN 46556, USA.

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http://dx.doi.org/10.1126/science.1258522DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4380271PMC
January 2015

Deleterious effect of suboptimal diet on rest-activity cycle in Anastrepha ludens manifests itself with age.

Sci Rep 2013 ;3:1773

Department of Entomology, College of Agricultural and Environmental Sciences, University of California, Davis, CA 95616, USA.

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http://dx.doi.org/10.1038/srep01773DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3642661PMC
February 2014

Integrating circadian activity and gene expression profiles to predict chronotoxicity of Drosophila suzukii response to insecticides.

PLoS One 2013 5;8(7):e68472. Epub 2013 Jul 5.

Department of Entomology and Nematology, College of Agricultural and Environmental Sciences, University of California Davis, Davis, California, USA.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0068472PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3702611PMC
February 2014

Genome of Drosophila suzukii, the spotted wing drosophila.

G3 (Bethesda) 2013 Dec 9;3(12):2257-71. Epub 2013 Dec 9.

Department of Entomology and Nematology, College of Agricultural and Environmental Sciences, University of California, Davis, California 95616.

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http://dx.doi.org/10.1534/g3.113.008185DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3852387PMC
December 2013

Phylogenomics resolves evolutionary relationships among ants, bees, and wasps.

Curr Biol 2013 Oct 3;23(20):2058-62. Epub 2013 Oct 3.

Department of Entomology and Nematology, University of California, Davis, One Shields Avenue, Davis, CA 95616, USA.

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http://dx.doi.org/10.1016/j.cub.2013.08.050DOI Listing
October 2013

A functional phylogenomic view of the seed plants.

PLoS Genet 2011 Dec 15;7(12):e1002411. Epub 2011 Dec 15.

Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1002411DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3240601PMC
December 2011

NEMO/NLK phosphorylates PERIOD to initiate a time-delay phosphorylation circuit that sets circadian clock speed.

Cell 2011 Apr;145(3):357-70

Department of Molecular Biology and Biochemistry, Rutgers University, Center for Advanced Biotechnology and Medicine, Piscataway, NJ 08854, USA.

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http://dx.doi.org/10.1016/j.cell.2011.04.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3092788PMC
April 2011

Gene orthology assessment with OrthologID.

Methods Mol Biol 2009 ;537:23-38

Department of Biology, Montclair State University, Montclair, NJ, USA.

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http://dx.doi.org/10.1007/978-1-59745-251-9_2DOI Listing
August 2009

The phospho-occupancy of an atypical SLIMB-binding site on PERIOD that is phosphorylated by DOUBLETIME controls the pace of the clock.

Genes Dev 2008 Jul;22(13):1758-72

Rutgers University, Center for Advanced Biotechnology and Medicine, Piscataway, New Jersey 08854, USA.

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http://dx.doi.org/10.1101/gad.1682708DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2492663PMC
July 2008

OrthologID: automation of genome-scale ortholog identification within a parsimony framework.

Bioinformatics 2006 Mar 12;22(6):699-707. Epub 2006 Jan 12.

Department of Biology, New York University, New York, NY 10003, USA.

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http://dx.doi.org/10.1093/bioinformatics/btk040DOI Listing
March 2006