Joann Mudge

Joann Mudge

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Joann Mudge

Joann Mudge

Publications by authors named "Joann Mudge"

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Experimental drought reduces genetic diversity in the grassland foundation species Bouteloua eriopoda.

Oecologia 2019 Apr 8;189(4):1107-1120. Epub 2019 Mar 8.

Department of Biology, University of New Mexico, Albuquerque, NM, USA.

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http://dx.doi.org/10.1007/s00442-019-04371-7DOI Listing
April 2019

Exploring Frequented Regions in Pan-Genomic Graphs.

IEEE/ACM Trans Comput Biol Bioinform 2019 Sep-Oct;16(5):1424-1435. Epub 2018 Aug 9.

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http://dx.doi.org/10.1109/TCBB.2018.2864564DOI Listing
August 2018

Augmenting Chinese hamster genome assembly by identifying regions of high confidence.

Biotechnol J 2016 Sep 19;11(9):1151-7. Epub 2016 Jul 19.

Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN, USA.

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http://dx.doi.org/10.1002/biot.201500455DOI Listing
September 2016

The plant-specific protein FEHLSTART controls male meiotic entry, initializing meiotic synchronization in Arabidopsis.

Plant J 2015 Nov 22;84(4):659-71. Epub 2015 Oct 22.

Department of Horticultural Science, University of Minnesota, 1970 Folwell Avenue, St Paul, MN, 55108, USA.

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http://doi.wiley.com/10.1111/tpj.13026
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http://dx.doi.org/10.1111/tpj.13026DOI Listing
November 2015

Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data.

PLoS One 2014 31;9(12):e115055. Epub 2014 Dec 31.

Texas Tech University, Department of Plant and Soil Sciences, Lubbock, TX, 79409, United States of America; Texas A&M AgriLife Research, 1102 East FM 1294, Lubbock, TX, 79403, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0115055PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4281230PMC
September 2015

Next-generation transcriptome sequencing, SNP discovery and validation in four market classes of peanut, Arachis hypogaea L.

Mol Genet Genomics 2015 Jun 7;290(3):1169-80. Epub 2015 Feb 7.

Department of Plant and Soil Sciences, Texas Tech University, Lubbock, TX, 79409, USA.

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http://dx.doi.org/10.1007/s00438-014-0976-4DOI Listing
June 2015

SNP markers identify widely distributed clonal lineages of Phytophthora colocasiae in Vietnam, Hawaii and Hainan Island, China.

Mycologia 2014 Jul-Aug;106(4):676-85. Epub 2014 Jun 3.

Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, Tennessee

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http://dx.doi.org/10.3852/13-165DOI Listing
October 2014

High-density genome-wide association mapping implicates an F-box encoding gene in Medicago truncatula resistance to Aphanomyces euteiches.

New Phytol 2014 Mar 28;201(4):1328-42. Epub 2013 Nov 28.

UPS, Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, BP42617, Auzeville, F-31326, Castanet-Tolosan, France; CNRS, Laboratoire de Recherche en Sciences Végétales, BP42617, Auzeville, F-31326, Castanet-Tolosan, France.

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http://dx.doi.org/10.1111/nph.12611DOI Listing
March 2014

Sequencing-based large-scale genomics approaches with small numbers of isolated maize meiocytes.

Front Plant Sci 2014 25;5:57. Epub 2014 Feb 25.

Department of Horticultural Science, University of Minnesota St. Paul, MN, USA.

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http://dx.doi.org/10.3389/fpls.2014.00057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3933774PMC
March 2014

Comparative transcriptomics of early meiosis in Arabidopsis and maize.

J Genet Genomics 2014 Mar 14;41(3):139-52. Epub 2013 Dec 14.

Department of Horticultural Science, University of Minnesota, St. Paul, MN 55108, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jgg.2013.11.007DOI Listing
March 2014

A transcriptomic approach to elucidate the physiological significance of human cytochrome P450 2S1 in bronchial epithelial cells.

BMC Genomics 2013 Nov 26;14:833. Epub 2013 Nov 26.

Department of Chemistry and Biochemistry, New Mexico State University, Las Cruces, NM 88003, USA.

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http://dx.doi.org/10.1186/1471-2164-14-833DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3884200PMC
November 2013

Transcriptome analysis of cytokinin response in tomato leaves.

PLoS One 2013 25;8(1):e55090. Epub 2013 Jan 25.

Department of Biological Sciences, Auburn University, Auburn, Alabama, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0055090PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3555872PMC
July 2013

Phylogenetic signal variation in the genomes of Medicago (Fabaceae).

Syst Biol 2013 May 15;62(3):424-38. Epub 2013 Feb 15.

Department of Plant Biology, University of Minnesota, Saint Paul MN 55108, USA.

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http://dx.doi.org/10.1093/sysbio/syt009DOI Listing
May 2013

Transcriptome profiling of cytokinin and auxin regulation in tomato root.

J Exp Bot 2013 Jan;64(2):695-704

Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.

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http://dx.doi.org/10.1093/jxb/ers365DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3542057PMC
January 2013

Characterization of a set of novel meiotically-active promoters in Arabidopsis.

BMC Plant Biol 2012 Jul 9;12:104. Epub 2012 Jul 9.

Department of Horticultural Science, University of Minnesota, St, Paul, MN 55108, USA.

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http://dx.doi.org/10.1186/1471-2229-12-104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3462685PMC
July 2012

Genome-wide association genetics of an adaptive trait in lodgepole pine.

Mol Ecol 2012 Jun 8;21(12):2991-3005. Epub 2012 Mar 8.

Department of Botany, University of Wyoming, Laramie, WY 82071, USA.

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http://doi.wiley.com/10.1111/j.1365-294X.2012.05513.x
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http://dx.doi.org/10.1111/j.1365-294X.2012.05513.xDOI Listing
June 2012

The Medicago genome provides insight into the evolution of rhizobial symbioses.

Authors:
Nevin D Young Frédéric Debellé Giles E D Oldroyd Rene Geurts Steven B Cannon Michael K Udvardi Vagner A Benedito Klaus F X Mayer Jérôme Gouzy Heiko Schoof Yves Van de Peer Sebastian Proost Douglas R Cook Blake C Meyers Manuel Spannagl Foo Cheung Stéphane De Mita Vivek Krishnakumar Heidrun Gundlach Shiguo Zhou Joann Mudge Arvind K Bharti Jeremy D Murray Marina A Naoumkina Benjamin Rosen Kevin A T Silverstein Haibao Tang Stephane Rombauts Patrick X Zhao Peng Zhou Valérie Barbe Philippe Bardou Michael Bechner Arnaud Bellec Anne Berger Hélène Bergès Shelby Bidwell Ton Bisseling Nathalie Choisne Arnaud Couloux Roxanne Denny Shweta Deshpande Xinbin Dai Jeff J Doyle Anne-Marie Dudez Andrew D Farmer Stéphanie Fouteau Carolien Franken Chrystel Gibelin John Gish Steven Goldstein Alvaro J González Pamela J Green Asis Hallab Marijke Hartog Axin Hua Sean J Humphray Dong-Hoon Jeong Yi Jing Anika Jöcker Steve M Kenton Dong-Jin Kim Kathrin Klee Hongshing Lai Chunting Lang Shaoping Lin Simone L Macmil Ghislaine Magdelenat Lucy Matthews Jamison McCorrison Erin L Monaghan Jeong-Hwan Mun Fares Z Najar Christine Nicholson Céline Noirot Majesta O'Bleness Charles R Paule Julie Poulain Florent Prion Baifang Qin Chunmei Qu Ernest F Retzel Claire Riddle Erika Sallet Sylvie Samain Nicolas Samson Iryna Sanders Olivier Saurat Claude Scarpelli Thomas Schiex Béatrice Segurens Andrew J Severin D Janine Sherrier Ruihua Shi Sarah Sims Susan R Singer Senjuti Sinharoy Lieven Sterck Agnès Viollet Bing-Bing Wang Keqin Wang Mingyi Wang Xiaohong Wang Jens Warfsmann Jean Weissenbach Doug D White Jim D White Graham B Wiley Patrick Wincker Yanbo Xing Limei Yang Ziyun Yao Fu Ying Jixian Zhai Liping Zhou Antoine Zuber Jean Dénarié Richard A Dixon Gregory D May David C Schwartz Jane Rogers Francis Quétier Christopher D Town Bruce A Roe

Nature 2011 Nov 16;480(7378):520-4. Epub 2011 Nov 16.

Department of Plant Pathology, University of Minnesota, St Paul, Minnesota 55108, USA.

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http://dx.doi.org/10.1038/nature10625DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3272368PMC
November 2011

Meiosis-specific gene discovery in plants: RNA-Seq applied to isolated Arabidopsis male meiocytes.

BMC Plant Biol 2010 Dec 17;10:280. Epub 2010 Dec 17.

Department of Horticultural Science, University of Minnesota, 1970 Folwell Avenue, St. Paul, MN 55108, USA.

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http://dx.doi.org/10.1186/1471-2229-10-280DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3018465PMC
December 2010

C6/36 Aedes albopictus cells have a dysfunctional antiviral RNA interference response.

PLoS Negl Trop Dis 2010 Oct 26;4(10):e856. Epub 2010 Oct 26.

Department of Pathology, University of New Mexico School of Medicine, Albuquerque, New Mexico, USA.

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http://dx.doi.org/10.1371/journal.pntd.0000856DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2964293PMC
October 2010

Genome-wide association studies: progress and potential for drug discovery and development.

Nat Rev Drug Discov 2008 Mar;7(3):221-30

National Center for Genome Resources, 2935 Rodeo Park Drive East, Santa Fe, New Mexico 87505, USA.

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http://dx.doi.org/10.1038/nrd2519DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2853477PMC
March 2008

Genome-wide association studies: progress in identifying genetic biomarkers in common, complex diseases.

Biomark Insights 2007 Aug 8;2:283-92. Epub 2007 Aug 8.

National Center for Genome Resources, Santa Fe, NM 87505, U.S.A.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2717811PMC
August 2007

Chromosome-level homeology in paleopolyploid soybean (Glycine max) revealed through integration of genetic and chromosome maps.

Genetics 2006 Mar 15;172(3):1893-900. Epub 2005 Dec 15.

Department of Agronomy, Purdue University, West Lafayette, Indiana 47906, USA.

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http://dx.doi.org/10.1534/genetics.105.051466DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1456260PMC
March 2006

Legume genomes: more than peas in a pod.

Curr Opin Plant Biol 2003 Apr;6(2):199-204

Department of Plant Pathology, 495 Borlaug Hall, University of Minnesota, St. Paul, Minnesota 55108, USA.

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April 2003