Joachim Messing

Joachim Messing

UNVERIFIED PROFILE

Are you Joachim Messing?   Register this Author

Register author
Joachim Messing

Joachim Messing

Publications by authors named "Joachim Messing"

Are you Joachim Messing?   Register this Author

100Publications

1367Reads

40Profile Views

Towards celiac-safe bread.

Plant Biotechnol J 2019 Oct 4. Epub 2019 Oct 4.

Waksman Institute of Microbiology, Rutgers University, 190 Frelinghuysen Road, Piscataway, NJ, 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/pbi.13273DOI Listing
October 2019

Plant evolution and environmental adaptation unveiled by long-read whole-genome sequencing of .

Proc Natl Acad Sci U S A 2019 Sep 4;116(38):18893-18899. Epub 2019 Sep 4.

School of Agriculture and Biology, Shanghai Jiao Tong University, 200240 Shanghai, China;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1910401116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6754600PMC
September 2019

Post-transcriptional adaptation of the aquatic plant Spirodela polyrhiza under stress and hormonal stimuli.

Plant J 2019 Jun 6;98(6):1120-1133. Epub 2019 Apr 6.

Waksman Institute of Microbiology, Rutgers University, New Brunswick, NJ, 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/tpj.14294DOI Listing
June 2019

NAC-type transcription factors regulate accumulation of starch and protein in maize seeds.

Proc Natl Acad Sci U S A 2019 Jun 20;116(23):11223-11228. Epub 2019 May 20.

Waksman Institute of Microbiology, Rutgers University, Piscataway, NJ 08854;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1904995116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6561305PMC
June 2019

Transcriptome and metabolome reveal distinct carbon allocation patterns during internode sugar accumulation in different sorghum genotypes.

Plant Biotechnol J 2019 02 15;17(2):472-487. Epub 2018 Sep 15.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/pbi.12991DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6335075PMC
February 2019

Candidate gene identification of existing or induced mutations with pipelines applicable to large genomes.

Plant J 2019 Feb 14;97(4):673-682. Epub 2018 Dec 14.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ, 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/tpj.14153DOI Listing
February 2019

A new high-throughput assay for determining soluble sugar in sorghum internode-extracted juice.

Planta 2018 Oct 11;248(4):785-793. Epub 2018 Jun 11.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ, 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00425-018-2932-8DOI Listing
October 2018

PacBio for Haplotyping in Gene Families.

Methods Mol Biol 2017 ;1551:61-71

Waksman Institute of Microbiology, Rutgers University, 190 Frelinghuysen Road, Piscataway, NJ, 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-4939-6750-6_3DOI Listing
July 2018

Genetic diversity and evolution of reduced sulfur storage during domestication of maize.

Plant J 2018 06 17;94(6):943-955. Epub 2018 Apr 17.

Institute of Crop Science, Zhejiang Key Laboratory of Crop Germplasm, Zhejiang University, Hangzhou, Zhejiang, 310058, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/tpj.13907DOI Listing
June 2018

Overexpression of serine acetyltransferase in maize leaves increases seed-specific methionine-rich zeins.

Plant Biotechnol J 2018 05 29;16(5):1057-1067. Epub 2017 Nov 29.

Department of Plant Biology, Rutgers University, New Brunswick, NJ, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/pbi.12851DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5902772PMC
May 2018

Quality Protein Maize Based on Reducing Sulfur in Leaf Cells.

Genetics 2017 12 20;207(4):1687-1697. Epub 2017 Oct 20.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, New Jersey 08854

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1534/genetics.117.300288DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5714473PMC
December 2017

Engineering sulfur storage in maize seed proteins without apparent yield loss.

Proc Natl Acad Sci U S A 2017 10 9;114(43):11386-11391. Epub 2017 Oct 9.

Waksman Institute of Microbiology, Rutgers University, Piscataway, NJ 08854;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1714805114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5664557PMC
October 2017

Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication.

J Hered 2014 Jul-Aug;105(4):576-582. Epub 2014 Mar 28.

From the Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, No.12 Zhongguancun Nandajie, Beijing 100081, China (Lang); the Department of Genetics, University of Wisconsin-Madison, 425 Henry Mall, Madison, WI 53706 (Wills, Lemmon, Shannon, and Doebley); the Department of Biomedical Sciences, Cornell University, T8 016D Veterinary Research Tower, Ithaca, NY 14853 (Shannon); the Computational Biology Service Unit, Cornell University, 620 Rhodes Hall, Ithaca, NY 14853 (Bukowski); Waksman Institute of Microbiology, Rutgers University, 190 Frelinghuysen Road, Piscataway, NJ 08854 (Wu and Messing); and the Institute of Plant Physiology & Ecology, Shanghai Institutes for Biological Sciences, CAS, 300 Feng Lin Road, Shanghai 200032, China (Wu).

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/jhered/esu019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6373496PMC
September 2017

Maize mutant generated by insertion of a element in a gene encoding a highly conserved TTI2 cochaperone.

Proc Natl Acad Sci U S A 2017 05 1;114(20):5165-5170. Epub 2017 May 1.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854

View Article

Download full-text PDF

Source
http://www.pnas.org/lookup/doi/10.1073/pnas.1703498114
Publisher Site
http://dx.doi.org/10.1073/pnas.1703498114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5441779PMC
May 2017

Genome-wide analysis of pentatricopeptide-repeat proteins of an aquatic plant.

Planta 2016 Oct 15;244(4):893-9. Epub 2016 Jun 15.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00425-016-2555-xDOI Listing
October 2016

Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis.

Proc Natl Acad Sci U S A 2016 09 12;113(39):10842-7. Epub 2016 Sep 12.

National Key Laboratory of Plant Molecular Genetics, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China;

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5047157PMC
http://dx.doi.org/10.1073/pnas.1613721113DOI Listing
September 2016

Analysis of tandem gene copies in maize chromosomal regions reconstructed from long sequence reads.

Proc Natl Acad Sci U S A 2016 07 27;113(29):7949-56. Epub 2016 Jun 27.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1608775113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4961126PMC
July 2016

RNA Editing in Chloroplasts of Spirodela polyrhiza, an Aquatic Monocotelydonous Species.

PLoS One 2015 30;10(10):e0140285. Epub 2015 Oct 30.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, New Jersey, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0140285PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4627657PMC
June 2016

Locus- and Site-Specific DNA Methylation of 19 kDa Zein Genes in Maize.

PLoS One 2016 7;11(1):e0146416. Epub 2016 Jan 7.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, New Jersey, 08854, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0146416PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4704816PMC
June 2016

Phage M13 for the treatment of Alzheimer and Parkinson disease.

Authors:
Joachim Messing

Gene 2016 Jun 8;583(2):85-89. Epub 2016 Feb 8.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.gene.2016.02.005DOI Listing
June 2016

Teff, an Orphan Cereal in the Chloridoideae, Provides Insights into the Evolution of Storage Proteins in Grasses.

Genome Biol Evol 2016 06 13;8(6):1712-21. Epub 2016 Jun 13.

Waksman Institute of Microbiology, Rutgers University.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/gbe/evw117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4943188PMC
June 2016

Grass genome structure and evolution.

Genome Dyn 2008 ;4:41-56

Waksman Institute of Microbiology, Rutgers University, Piscataway, N.J.; USA.

View Article

Download full-text PDF

Source
https://www.karger.com/Article/FullText/126005
Publisher Site
http://dx.doi.org/10.1159/000126005DOI Listing
April 2016

The map-based genome sequence of Spirodela polyrhiza aligned with its chromosomes, a reference for karyotype evolution.

New Phytol 2016 Jan 25;209(1):354-63. Epub 2015 Aug 25.

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), OT Gatersleben, Corrensstrasse 3, 06466, Stadt Seeland, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/nph.13592DOI Listing
January 2016

Genome-wide histone acetylation correlates with active transcription in maize.

Genomics 2015 Oct 27;106(4):214-20. Epub 2015 May 27.

Waksman Institute of Microbiology, Rutgers University, 190 Frelinghuysen Road, Piscataway, NJ 08854, USA. Electronic address:

View Article

Download full-text PDF

Source
https://linkinghub.elsevier.com/retrieve/pii/S08887543153000
Publisher Site
http://dx.doi.org/10.1016/j.ygeno.2015.05.005DOI Listing
October 2015

Dynamics of chloroplast genomes in green plants.

Genomics 2015 Oct 21;106(4):221-31. Epub 2015 Jul 21.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ygeno.2015.07.004DOI Listing
October 2015

The Wukong Terminal-Repeat Retrotransposon in Miniature (TRIM) Elements in Diverse Maize Germplasm.

G3 (Bethesda) 2015 May 26;5(8):1585-92. Epub 2015 May 26.

Institute of Crop Science, Zhejiang Key Laboratory of Crop Germplasm, Zhejiang University, Hangzhou, Zhejiang 310058, China

View Article

Download full-text PDF

Source
http://g3journal.org/lookup/doi/10.1534/g3.115.018317
Publisher Site
http://dx.doi.org/10.1534/g3.115.018317DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4528315PMC
May 2015

Evolution of gene expression after gene amplification.

Genome Biol Evol 2015 Apr 24;7(5):1303-12. Epub 2015 Apr 24.

Waksman Institute of Microbiology, Rutgers University

View Article

Download full-text PDF

Source
https://academic.oup.com/gbe/article-lookup/doi/10.1093/gbe/
Publisher Site
http://dx.doi.org/10.1093/gbe/evv075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4453070PMC
April 2015

Proteome balancing of the maize seed for higher nutritional value.

Front Plant Sci 2014 30;5:240. Epub 2014 May 30.

Waksman Institute of Microbiology, Rutgers University Piscataway, NJ, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fpls.2014.00240DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4039071PMC
June 2014

Mutation in the seed storage protein kafirin creates a high-value food trait in sorghum.

Nat Commun 2013 ;4:2217

Waksman Institute of Microbiology, Rutgers University, 190 Frelinghuysen Road, Piscataway, New Jersey 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/ncomms3217DOI Listing
April 2014

PacBio sequencing of gene families - a case study with wheat gluten genes.

Gene 2014 Jan 19;533(2):541-6. Epub 2013 Oct 19.

Waksman Institute of Microbiology, Rutgers University, 190 Frelinghuysen Road, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
https://linkinghub.elsevier.com/retrieve/pii/S03781119130136
Publisher Site
http://dx.doi.org/10.1016/j.gene.2013.10.009DOI Listing
January 2014

RNA-Seq transcriptome analysis of Spirodela dormancy without reproduction.

BMC Genomics 2014 Jan 23;15:60. Epub 2014 Jan 23.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, 190 Frelinghuysen Road, Piscataway, NJ, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-15-60DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3933069PMC
January 2014

Discovery of MicroRNA169 gene copies in genomes of flowering plants through positional information.

Genome Biol Evol 2013 ;5(2):402-17

Waksman Institute of Microbiology, Rutgers University, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/gbe/evt015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3590774PMC
September 2013

Divergent properties of prolamins in wheat and maize.

Planta 2013 Jun 23;237(6):1465-73. Epub 2013 Feb 23.

Waksman Institute of Microbiology, Rutgers University, 190 Frelinghuysen Road, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00425-013-1857-5DOI Listing
June 2013

The mitochondrial genome of an aquatic plant, Spirodela polyrhiza.

PLoS One 2012 4;7(10):e46747. Epub 2012 Oct 4.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, New Jersey, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0046747PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3464924PMC
May 2013

Epiallele biogenesis in maize.

Gene 2013 Mar 20;516(1):8-23. Epub 2012 Dec 20.

Waksman Institute of Microbiology, Rutgers University, 190 Frelinghuysen Road, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.gene.2012.12.034DOI Listing
March 2013

Paramutagenicity of a p1 epiallele in maize.

Theor Appl Genet 2013 Jan 18;126(1):159-77. Epub 2012 Sep 18.

Waksman Institute of Microbiology, Rutgers University, 190 Frelinghuysen Road, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00122-012-1970-zDOI Listing
January 2013

Rapid divergence of prolamin gene promoters of maize after gene amplification and dispersal.

Genetics 2012 Oct 13;192(2):507-19. Epub 2012 Jul 13.

Waksman Institute of Microbiology, Rutgers University, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1534/genetics.112.142372DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3454880PMC
October 2012

RNA interference can rebalance the nitrogen sink of maize seeds without losing hard endosperm.

PLoS One 2012 29;7(2):e32850. Epub 2012 Feb 29.

Waksman Institute of Microbiology, Rutgers University, Piscataway, New Jersey, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0032850PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3290596PMC
July 2012

Sweet sorghum as a model system for bioenergy crops.

Curr Opin Biotechnol 2012 Jun 26;23(3):323-9. Epub 2011 Dec 26.

Waksman Institute of Microbiology, Rutgers University, 190 Frelinghuysen Road, Piscataway, NJ 08854-8020, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.copbio.2011.12.002DOI Listing
June 2012

Energy biotechnology.

Curr Opin Biotechnol 2012 Jun 22;23(3):287-9. Epub 2012 Mar 22.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.copbio.2012.03.005DOI Listing
June 2012

Balancing of sulfur storage in maize seed.

BMC Plant Biol 2012 May 30;12:77. Epub 2012 May 30.

Waksman Institute of Microbiology, Rutgers University, 190 Frelinghuysen Road, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2229-12-77DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3420316PMC
May 2012

High-throughput sequencing of three Lemnoideae (duckweeds) chloroplast genomes from total DNA.

PLoS One 2011 9;6(9):e24670. Epub 2011 Sep 9.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, New Jersey, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0024670PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3170387PMC
February 2012

Dynamic gene copy number variation in collinear regions of grass genomes.

Mol Biol Evol 2012 Feb 14;29(2):861-71. Epub 2011 Oct 14.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, New Jersey, USA.

View Article

Download full-text PDF

Source
https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
Publisher Site
http://dx.doi.org/10.1093/molbev/msr261DOI Listing
February 2012

Analysis of ADP-glucose pyrophosphorylase expression during turion formation induced by abscisic acid in Spirodela polyrhiza (greater duckweed).

BMC Plant Biol 2012 Jan 11;12. Epub 2012 Jan 11.

Waksman Institute of Microbiology, Rutgers University, 190 Frelinghuysen Road, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://bmcplantbiol.biomedcentral.com/articles/10.1186/1471-
Publisher Site
http://dx.doi.org/10.1186/1471-2229-12-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3268088PMC
January 2012

The maize high-lysine mutant opaque7 is defective in an acyl-CoA synthetase-like protein.

Genetics 2011 Dec 16;189(4):1271-80. Epub 2011 Sep 16.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, New Jersey 08854, USA.

View Article

Download full-text PDF

Source
http://www.genetics.org/lookup/doi/10.1534/genetics.111.1339
Publisher Site
http://dx.doi.org/10.1534/genetics.111.133918DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3241421PMC
December 2011

Novel genetic selection system for quantitative trait loci of quality protein maize.

Genetics 2011 Aug 6;188(4):1019-22. Epub 2011 Jun 6.

Waksman Institute of Microbiology, Rutgers University, Piscataway, New Jersey 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1534/genetics.111.131078DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3176102PMC
August 2011

Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems.

BMC Genomics 2011 Jul 8;12:356. Epub 2011 Jul 8.

Waksman Institute of Microbiology, Rutgers University, Piscataway, New Jersey 08854-8020, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-12-356DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3143107PMC
July 2011

Differential gene expression and epiregulation of alpha zein gene copies in maize haplotypes.

PLoS Genet 2011 Jun 23;7(6):e1002131. Epub 2011 Jun 23.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, New Jersey, United States of America.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pgen.1002131DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3121756PMC
June 2011

Rescue of a dominant mutant with RNA interference.

Genetics 2010 Dec 27;186(4):1493-6. Epub 2010 Sep 27.

Waksman Institute of Microbiology, Rutgers University, Piscataway, New Jersey 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1534/genetics.110.123471DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2998327PMC
December 2010

Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution.

Genome Res 2010 Nov 28;20(11):1545-57. Epub 2010 Sep 28.

INRA, UMR 1095, Laboratoire Génétique, Diversité et Ecophysiologie des Céréales, 63100 Clermont Ferrand, France.

View Article

Download full-text PDF

Source
http://genome.cshlp.org/cgi/doi/10.1101/gr.109744.110
Publisher Site
http://dx.doi.org/10.1101/gr.109744.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2963818PMC
November 2010

Divergence of gene regulation through chromosomal rearrangements.

BMC Genomics 2010 Nov 30;11:678. Epub 2010 Nov 30.

Waksman Institute of Microbiology, Rutgers University, 190 Frelinghuysen Road, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-11-678DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3014980PMC
November 2010

Palaeogenomics of plants: synteny-based modelling of extinct ancestors.

Trends Plant Sci 2010 Sep 17;15(9):479-87. Epub 2010 Jul 17.

INRA, UMR 1095, Laboratoire Génétique, Diversité et Ecophysiologie des Céréales, 234 avenue du Brézet, 63100 Clermont Ferrand, France.

View Article

Download full-text PDF

Source
http://www.cell.com/trends/plant-science/pdf/S1360-1385(10)0
Web Search
http://linkinghub.elsevier.com/retrieve/pii/S136013851000132
Publisher Site
http://dx.doi.org/10.1016/j.tplants.2010.06.001DOI Listing
September 2010

DNA barcoding of the Lemnaceae, a family of aquatic monocots.

BMC Plant Biol 2010 Sep 16;10:205. Epub 2010 Sep 16.

Waksman Institute of Microbiology, Rutgers University, 190 Frelinghuysen Road, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://bmcplantbiol.biomedcentral.com/articles/10.1186/1471-
Publisher Site
http://dx.doi.org/10.1186/1471-2229-10-205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2956554PMC
September 2010

Gamma-zeins are essential for endosperm modification in quality protein maize.

Proc Natl Acad Sci U S A 2010 Jul 6;107(29):12810-5. Epub 2010 Jul 6.

Waksman Institute of Microbiology, Rutgers University, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://www.pnas.org/cgi/doi/10.1073/pnas.1004721107
Publisher Site
http://dx.doi.org/10.1073/pnas.1004721107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2919962PMC
July 2010

On the tetraploid origin of the maize genome.

Comp Funct Genomics 2004 ;5(3):281-4

Waksman Institute of Microbiology, Rutgers University, 190 Frelinghuysen Road, Piscataway, NJ 08854-8020, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/cfg.395DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447450PMC
June 2010

RNA interference-mediated change in protein body morphology and seed opacity through loss of different zein proteins.

Plant Physiol 2010 May 17;153(1):337-47. Epub 2010 Mar 17.

Waksman Institute of Microbiology, Rutgers University, Piscataway, New Jersey 08854, USA.

View Article

Download full-text PDF

Source
http://www.plantphysiol.org/cgi/doi/10.1104/pp.110.154690
Publisher Site
http://dx.doi.org/10.1104/pp.110.154690DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2862413PMC
May 2010

Amplification of prolamin storage protein genes in different subfamilies of the Poaceae.

Theor Appl Genet 2009 Nov 29;119(8):1397-412. Epub 2009 Aug 29.

Waksman Institute of Microbiology, Rutgers University, 190 Frelinghuysen Road, Piscataway, NJ, 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00122-009-1143-xDOI Listing
November 2009

Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals.

Proc Natl Acad Sci U S A 2009 Sep 13;106(35):14908-13. Epub 2009 Aug 13.

Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1095, Génétique, Diversité et Ecophysiologie des Céréales, Université Blaise Pascal, 234 Avenue du Brézet, 63100 Clermont Ferrand, France.

View Article

Download full-text PDF

Source
http://www.pnas.org/content/106/35/14908.full.pdf
Web Search
http://www.pnas.org/cgi/doi/10.1073/pnas.0902350106
Publisher Site
http://dx.doi.org/10.1073/pnas.0902350106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2736418PMC
September 2009

Non-Mendelian regulation and allelic variation of methionine-rich delta-zein genes in maize.

Theor Appl Genet 2009 Aug 7;119(4):721-31. Epub 2009 Jun 7.

Waksman Institute of Microbiology, Rutgers University, 190 Frelinghuysen Road, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00122-009-1083-5DOI Listing
August 2009

Change of gene structure and function by non-homologous end-joining, homologous recombination, and transposition of DNA.

PLoS Genet 2009 Jun 12;5(6):e1000516. Epub 2009 Jun 12.

Waksman Institute of Microbiology, Rutgers University, Piscataway, NJ, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pgen.1000516DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686159PMC
June 2009

The 'inner circle' of the cereal genomes.

Curr Opin Plant Biol 2009 Apr 16;12(2):119-25. Epub 2008 Dec 16.

INRA/UBP UMR 1095, Domaine de Crouelle, 234 avenue du Brézet 63100 Clermont Ferrand, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.pbi.2008.10.011DOI Listing
April 2009

Synergy of two reference genomes for the grass family.

Authors:
Joachim Messing

Plant Physiol 2009 Jan;149(1):117-24

Waksman Institute of Microbiology, Rutgers University, Piscataway, New Jersey 08854-8020, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1104/pp.108.128520DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2613724PMC
January 2009

Organization of the prolamin gene family provides insight into the evolution of the maize genome and gene duplications in grass species.

Proc Natl Acad Sci U S A 2008 Sep 15;105(38):14330-5. Epub 2008 Sep 15.

Waksman Institute, Rutgers, The State University of New Jersey, Piscataway, NJ 08854-8020, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.0807026105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2567223PMC
September 2008

Diverged copies of the seed regulatory Opaque-2 gene by a segmental duplication in the progenitor genome of rice, sorghum, and maize.

Mol Plant 2008 Sep 1;1(5):760-9. Epub 2008 Aug 1.

Waksman Institute of Microbiology, Rutgers University, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/mp/ssn038DOI Listing
September 2008

Genetic analysis of opaque2 modifier loci in quality protein maize.

Theor Appl Genet 2008 Jul 22;117(2):157-70. Epub 2008 Apr 22.

Department of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/s00122-008-0762-y
Publisher Site
http://dx.doi.org/10.1007/s00122-008-0762-yDOI Listing
July 2008

The Rice Annotation Project Database (RAP-DB): 2008 update.

Nucleic Acids Res 2008 Jan 17;36(Database issue):D1028-33. Epub 2007 Dec 17.

National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkm978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238920PMC
January 2008

Analysis of EST sequences suggests recent origin of allotetraploid colonial and creeping bentgrasses.

Mol Genet Genomics 2007 Aug 12;278(2):197-209. Epub 2007 May 12.

Department of Plant Biology and Pathology and The Biotechnology Center for Agriculture & the Environment, School of Environmental and Biological Sciences, Rutgers, The State University of New Jersey, New Brunswick, NJ 08903, USA.

View Article

Download full-text PDF

Source
http://link.springer.com/content/pdf/10.1007/s00438-007-0240
Web Search
http://link.springer.com/10.1007/s00438-007-0240-2
Publisher Site
http://dx.doi.org/10.1007/s00438-007-0240-2DOI Listing
August 2007

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.

Genome Res 2007 Feb 8;17(2):175-83. Epub 2007 Jan 8.

Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.5509507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1781349PMC
February 2007

Efficacy of clone fingerprinting methodologies.

Genomics 2007 Jan 2;89(1):160-5. Epub 2006 Oct 2.

Arizona Genomics Computational Laboratory, BIO5 Institute, University of Arizona, Tucson, AZ 85721, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ygeno.2006.08.008DOI Listing
January 2007

Maize haplotype with a helitron-amplified cytidine deaminase gene copy.

BMC Genet 2006 Nov 9;7:52. Epub 2006 Nov 9.

Waksman Institute of Microbiology, Rutgers University, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2156-7-52DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1657028PMC
November 2006

Retrotranspositions in orthologous regions of closely related grass species.

BMC Evol Biol 2006 Aug 16;6:62. Epub 2006 Aug 16.

Waksman Institute of Microbiology, Rutgers University, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2
Publisher Site
http://dx.doi.org/10.1186/1471-2148-6-62DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1560396PMC
August 2006

Organization and variability of the maize genome.

Curr Opin Plant Biol 2006 Apr 3;9(2):157-63. Epub 2006 Feb 3.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, 190 Frelinghuysen Road, Piscataway, New Jersey 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.pbi.2006.01.009DOI Listing
April 2006

Structure and architecture of the maize genome.

Plant Physiol 2005 Dec;139(4):1612-24

Munich Information Center for Protein Sequences, Institute for Bioinformatics, Gesellschaft für Strahlenforschung Research Center for Environment and Health, D-85764 Neuherberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1104/pp.105.068718DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1310546PMC
December 2005

Whole-genome validation of high-information-content fingerprinting.

Plant Physiol 2005 Sep;139(1):27-38

Arizona Genomics Computational Laboratory, BIO5 Institute, University of Arizona, Tucson, 85721, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1104/pp.105.061978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1203355PMC
September 2005

DNA rearrangement in orthologous orp regions of the maize, rice and sorghum genomes.

Genetics 2005 Jul 16;170(3):1209-20. Epub 2005 Apr 16.

Department of Genetics, University of Georgia, Athens, Georgia 30602, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1534/genetics.105.040915DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1451190PMC
July 2005

Gene movement by Helitron transposons contributes to the haplotype variability of maize.

Proc Natl Acad Sci U S A 2005 Jun 10;102(25):9068-73. Epub 2005 Jun 10.

The Waksman Institute, Rutgers, The State University of New Jersey, Piscataway, NJ 08855, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.0502923102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1157042PMC
June 2005

Structure and evolution of the r/b chromosomal regions in rice, maize and sorghum.

Genetics 2005 Feb 16;169(2):891-906. Epub 2004 Oct 16.

Waksman Institute of Microbiology, Rutgers University, Piscataway, New Jersey 08854-8020, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1534/genetics.104.034629DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1449108PMC
February 2005

Expression of the sorghum 10-member kafirin gene cluster in maize endosperm.

Nucleic Acids Res 2004 Dec 29;32(22):e189. Epub 2004 Dec 29.

Waksman Institute, Rutgers University, 190 Frelinghuysen Road, Piscataway, NJ 08854-8020, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gnh183DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC545481PMC
December 2004

Asymmetric localization of seed storage protein RNAs to distinct subdomains of the endoplasmic reticulum in developing maize endosperm cells.

Plant Cell Physiol 2004 Dec;45(12):1830-7

Institute of Biological Chemistry, Washington State University, Pullman, WA 99164-6340, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/pcp/pch210DOI Listing
December 2004

Sequence composition and genome organization of maize.

Proc Natl Acad Sci U S A 2004 Oct 23;101(40):14349-54. Epub 2004 Sep 23.

Plant Genome Initiative at Rutgers, Waksman Institute, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.0406163101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC521949PMC
October 2004

Close split of sorghum and maize genome progenitors.

Genome Res 2004 Oct;14(10A):1916-23

Waksman Institute of Microbiology, Rutgers University, Piscataway, New Jersey 08854, USA.

View Article

Download full-text PDF

Source
http://www.genome.org/cgi/doi/10.1101/gr.2332504
Publisher Site
http://dx.doi.org/10.1101/gr.2332504DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC524415PMC
October 2004

Characterization of the maize endosperm transcriptome and its comparison to the rice genome.

Genome Res 2004 Oct;14(10A):1932-7

Waksman Institute, Rutgers, The State University of New Jersey, Piscataway, New Jersey 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.2780504DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC524417PMC
October 2004

Pattern of diversity in the genomic region near the maize domestication gene tb1.

Proc Natl Acad Sci U S A 2004 Jan 30;101(3):700-7. Epub 2003 Dec 30.

Laboratory of Genetics, University of Wisconsin, Madison, WI 53706, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.2237049100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC321743PMC
January 2004

A new opaque variant of maize by a single dominant RNA-interference-inducing transgene.

Genetics 2003 Sep;165(1):387-97

Waksman Institute, Rutgers, The State University of New Jersey, Piscataway, New Jersey 08854, USA.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462732PMC
September 2003

Gene expression of a gene family in maize based on noncollinear haplotypes.

Proc Natl Acad Sci U S A 2003 Jul 9;100(15):9055-60. Epub 2003 Jul 9.

Waksman Institute, Rutgers, The State University of New Jersey, 190 Frelinghuysen Road, Piscataway, NJ 08854-8020.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1032999100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC166437PMC
July 2003

Comparative sequence analysis of the sorghum Rph region and the maize Rp1 resistance gene complex.

Plant Physiol 2002 Dec;130(4):1728-38

Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1104/pp.014951DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC166687PMC
December 2002