Publications by authors named "Jiyang Yu"

34Publications

Integrative genomic analyses reveal mechanisms of glucocorticoid resistance in acute lymphoblastic leukemia.

Authors:
Robert J Autry Steven W Paugh Robert Carter Lei Shi Jingjing Liu Daniel C Ferguson Calvin E Lau Erik J Bonten Wenjian Yang J Robert McCorkle Jordan A Beard John C Panetta Jonathan D Diedrich Kristine R Crews Deqing Pei Christopher J Coke Sivaraman Natarajan Alireza Khatamian Seth E Karol Elixabet Lopez-Lopez Barthelemy Diouf Colton Smith Yoshihiro Gocho Kohei Hagiwara Kathryn G Roberts Stanley Pounds Steven M Kornblau Wendy Stock Elisabeth M Paietta Mark R Litzow Hiroto Inaba Charles G Mullighan Sima Jeha Ching-Hon Pui Cheng Cheng Daniel Savic Jiyang Yu Charles Gawad Mary V Relling Jun J Yang William E Evans

Nat Cancer 2020 Mar 9;1(3):329-344. Epub 2020 Mar 9.

Hematological Malignancies Program and Center for Precision Medicine in Leukemia, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.

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March 2020

Cross-talk between GLI transcription factors and FOXC1 promotes T-cell acute lymphoblastic leukemia dissemination.

Authors:
Valeria Tosello Deborah Bongiovanni Jingjing Liu Qingfei Pan Koon-Kiu Yan Valentina Saccomani Maaike Van Trimpont Marco Pizzi Martina Mazzoni Angelo Paolo Dei Tos Alberto Amadori Paola Zanovello Pieter Van Vlierberghe Jiyang Yu Erich Piovan

Leukemia 2020 Jul 30. Epub 2020 Jul 30.

UOC Immunologia e Diagnostica Molecolare Oncologica, Istituto Oncologico Veneto IOV-IRCCS, Padova, Italia.

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July 2020

Network Approaches for Dissecting the Immune System.

Authors:
Hao Shi Koon-Kiu Yan Liang Ding Chenxi Qian Hongbo Chi Jiyang Yu

iScience 2020 Aug 10;23(8):101354. Epub 2020 Jul 10.

Departments of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA. Electronic address:

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August 2020

Akt Inhibition Is Associated With Favorable Immune Profile Changes Within the Tumor Microenvironment of Hormone Receptor Positive, HER2 Negative Breast Cancer.

Authors:
Douglas K Marks Robyn D Gartrell Margueritta El Asmar Shuobo Boboila Thomas Hart Yan Lu Qingfei Pan Jiyang Yu Hanina Hibshoosh Hua Guo Eleni Andreopoulou Lisa Wiechmann Katherine Crew Joseph Sparano Dawn Hershman Eileen Connolly Yvonne Saenger Kevin Kalinsky

Front Oncol 2020 16;10:968. Epub 2020 Jun 16.

Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, United States.

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June 2020

The Shaggy Ink Cap Medicinal Mushroom, Coprinus comatus (Agaricomycetes), a Versatile Functional Species: A Review.

Authors:
Hui Cao Dawei Qin Hong Guo Xiaowei Cui Shanshan Wang Yumeng Wu Wenxiu Zheng Xiaofei Zhong Haonan Wang Jiyang Yu Hua Zhang Chunchao Han

Int J Med Mushrooms 2020 ;22(3):245-255

School of Pharmacy, Shandong University of Traditional Chinese Medicine, Jinan, 250355, P.R. China.

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January 2020

G3BP1 Is a Tunable Switch that Triggers Phase Separation to Assemble Stress Granules.

Authors:
Peiguo Yang Cécile Mathieu Regina-Maria Kolaitis Peipei Zhang James Messing Ugur Yurtsever Zemin Yang Jinjun Wu Yuxin Li Qingfei Pan Jiyang Yu Erik W Martin Tanja Mittag Hong Joo Kim J Paul Taylor

Cell 2020 04;181(2):325-345.e28

Department of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address:

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April 2020

An ABC Transporter Drives Medulloblastoma Pathogenesis by Regulating Sonic Hedgehog Signaling.

Authors:
Juwina Wijaya BaoHan T Vo Jingjing Liu Beisi Xu Gang Wu Yao Wang Junmin Peng Jin Zhang Laura J Janke Brent A Orr Jiyang Yu Martine F Roussel John D Schuetz

Cancer Res 2020 04 16;80(7):1524-1537. Epub 2020 Jan 16.

Department of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, Tennessee.

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April 2020

Targeting REGNASE-1 programs long-lived effector T cells for cancer therapy.

Authors:
Jun Wei Lingyun Long Wenting Zheng Yogesh Dhungana Seon Ah Lim Cliff Guy Yanyan Wang Yong-Dong Wang Chenxi Qian Beisi Xu Anil Kc Jordy Saravia Hongling Huang Jiyang Yu John G Doench Terrence L Geiger Hongbo Chi

Nature 2019 12 11;576(7787):471-476. Epub 2019 Dec 11.

Department of Immunology, St Jude Children's Research Hospital, Memphis, TN, USA.

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December 2019

Spontaneous lymphoblastoid cell lines from patients with Epstein-Barr virus infection show highly variable proliferation characteristics that correlate with the expression levels of viral microRNAs.

Authors:
Susanne Delecluse Jiyang Yu Katharina Bernhardt Janina Haar Remy Poirey Ming-Han Tsai Rama Kiblawi Annette Kopp-Schneider Paul Schnitzler Martin Zeier Peter Dreger Patrick Wuchter Olcay Cem Bulut Uta Behrends Henri-Jacques Delecluse

PLoS One 2019 30;14(9):e0222847. Epub 2019 Sep 30.

German Cancer Research Centre (DKFZ) Unit F100, Heidelberg, Germany.

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March 2020

Comparative study on the monosaccharide compositions, antioxidant and hypoglycemic activities in vitro of intracellular and extracellular polysaccharides of liquid fermented Coprinus comatus.

Authors:
Hui Cao Shan Ma Hong Guo Xiaowei Cui Shanshan Wang Xiaofei Zhong Yumeng Wu Wenxiu Zheng Haonan Wang Jiyang Yu Luyu Ma Han Chun-Chao

Int J Biol Macromol 2019 Oct 2;139:543-549. Epub 2019 Aug 2.

School of Pharmacy, Shandong University of Traditional Chinese Medicine, Jinan, 250355, People's Republic of China. Electronic address:

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October 2019

Selfie Video Stabilization.

Authors:
Jiyang Yu Ravi Ramamoorthi

IEEE Trans Pattern Anal Mach Intell 2021 Feb 8;43(2):701-711. Epub 2021 Jan 8.

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February 2021

Systems immunology: Integrating multi-omics data to infer regulatory networks and hidden drivers of immunity.

Authors:
Jiyang Yu Junmin Peng Hongbo Chi

Curr Opin Syst Biol 2019 Jun 12;15:19-29. Epub 2019 Mar 12.

Department of Immunology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.

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June 2019

Silymarin's Inhibition and Treatment Effects for Alzheimer's Disease.

Authors:
Hong Guo Hui Cao Xiaowei Cui Wenxiu Zheng Shanshan Wang Jiyang Yu Zhi Chen

Molecules 2019 May 6;24(9). Epub 2019 May 6.

School of Pharmacy, Shandong University of Traditional Chinese Medicine, Jinan 250355, China.

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May 2019

LKB1 orchestrates dendritic cell metabolic quiescence and anti-tumor immunity.

Authors:
Yanyan Wang Xingrong Du Jun Wei Lingyun Long Haiyan Tan Cliff Guy Yogesh Dhungana Chenxi Qian Geoffrey Neale Yang-Xin Fu Jiyang Yu Junmin Peng Hongbo Chi

Cell Res 2019 05 25;29(5):391-405. Epub 2019 Mar 25.

Department of Immunology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.

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May 2019

SJARACNe: a scalable software tool for gene network reverse engineering from big data.

Authors:
Alireza Khatamian Evan O Paull Andrea Califano Jiyang Yu

Bioinformatics 2019 06;35(12):2165-2166

Department of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.

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June 2019

Transcription factor activating protein 4 is synthetically lethal and a master regulator of MYCN-amplified neuroblastoma.

Authors:
Shuobo Boboila Gonzalo Lopez Jiyang Yu Debarshi Banerjee Angela Kadenhe-Chiweshe Eileen P Connolly Jessica J Kandel Presha Rajbhandari Jose M Silva Andrea Califano Darrell J Yamashiro

Oncogene 2018 10 7;37(40):5451-5465. Epub 2018 Jun 7.

Department of Pediatrics, Columbia University Medical Center, New York, NY, 10032, USA.

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October 2018

Hippo/Mst signalling couples metabolic state and immune function of CD8α dendritic cells.

Authors:
Xingrong Du Jing Wen Yanyan Wang Peer W F Karmaus Alireza Khatamian Haiyan Tan Yuxin Li Cliff Guy Thanh-Long M Nguyen Yogesh Dhungana Geoffrey Neale Junmin Peng Jiyang Yu Hongbo Chi

Nature 2018 06 30;558(7708):141-145. Epub 2018 May 30.

Department of Immunology, St Jude Children's Research Hospital, Memphis, TN, USA.

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June 2018

Bayesian Network to Infer Drug-Induced Apoptosis Circuits from Connectivity Map Data.

Authors:
Jiyang Yu Jose M Silva

Methods Mol Biol 2018 ;1783:361-378

Department of Pathology, Icahn School of Medicine at Mount Sinai, The Mount Sinai Hospital, New York, NY, USA.

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February 2019

Cross-Cohort Analysis Identifies a TEAD4-MYCN Positive Feedback Loop as the Core Regulatory Element of High-Risk Neuroblastoma.

Authors:
Presha Rajbhandari Gonzalo Lopez Claudia Capdevila Beatrice Salvatori Jiyang Yu Ruth Rodriguez-Barrueco Daniel Martinez Mark Yarmarkovich Nina Weichert-Leahey Brian J Abraham Mariano J Alvarez Archana Iyer Jo Lynne Harenza Derek Oldridge Katleen De Preter Jan Koster Shahab Asgharzadeh Robert C Seeger Jun S Wei Javed Khan Jo Vandesompele Pieter Mestdagh Rogier Versteeg A Thomas Look Richard A Young Antonio Iavarone Anna Lasorella Jose M Silva John M Maris Andrea Califano

Cancer Discov 2018 05 6;8(5):582-599. Epub 2018 Mar 6.

Department of Systems Biology, Columbia University, New York, New York.

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May 2018

A novel AP2/ERF family transcription factor from Glycine soja, GsERF71, is a DNA binding protein that positively regulates alkaline stress tolerance in Arabidopsis.

Authors:
Yang Yu Xiangbo Duan Xiaodong Ding Chao Chen Dan Zhu Kuide Yin Lei Cao Xuewei Song Pinghui Zhu Qiang Li Zaib Un Nisa Jiyang Yu Jianying Du Yu Song Huiqing Li Beidong Liu Yanming Zhu

Plant Mol Biol 2017 Jul 5;94(4-5):509-530. Epub 2017 Jul 5.

Key Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, China.

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July 2017