Jiuzhou Song

Jiuzhou Song

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Jiuzhou Song

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Distinct roles of retinoic acid and BMP4 pathways in the formation of chicken primordial germ cells and spermatogonial stem cells.

Food Funct 2019 Nov 9;10(11):7152-7163. Epub 2019 Oct 9.

Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu 225009, China. and Joint International Research Laboratory of Agriculture and Agri-Product Safety of Ministry of Education of China, Yangzhou University, Yangzhou, Jiangsu 225009, China.

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http://dx.doi.org/10.1039/c9fo01485cDOI Listing
November 2019

The different effects of viral and bacterial mimics maternal stimuli on ethology of hens and reproduction of their offspring.

Poult Sci 2019 Sep;98(9):4153-4160

National Engineering Laboratory for Animal Breeding & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, College of Animal Science and Technology, China Agricultural University, Beijing 100193, P.R. China.

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http://dx.doi.org/10.3382/ps/pez189DOI Listing
September 2019

Allele-Specific Expression of CD4 T Cells in Response to Marek's Disease Virus Infection.

Genes (Basel) 2019 09 17;10(9). Epub 2019 Sep 17.

Department of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA.

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http://dx.doi.org/10.3390/genes10090718DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6770979PMC
September 2019

Marek's Disease Virus Infection Induced Mitochondria Changes in Chickens.

Int J Mol Sci 2019 Jun 27;20(13). Epub 2019 Jun 27.

Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20740, USA.

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http://dx.doi.org/10.3390/ijms20133150DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6651546PMC
June 2019

Integrated analysis of lncRNA and mRNA repertoires in Marek's disease infected spleens identifies genes relevant to resistance.

BMC Genomics 2019 Mar 28;20(1):245. Epub 2019 Mar 28.

Department of Animal Genetics and Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China.

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http://dx.doi.org/10.1186/s12864-019-5625-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6438004PMC
March 2019

Functional characterization of the Sox2, c-Myc, and Oct4 promoters.

J Cell Biochem 2019 Jan 11;120(1):332-342. Epub 2018 Sep 11.

Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology, Yangzhou University, Yangzhou, China.

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http://dx.doi.org/10.1002/jcb.27374DOI Listing
January 2019

Study on immortal conditions of chicken embryonic stem cells.

J Cell Biochem 2018 Nov 16. Epub 2018 Nov 16.

Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology, Yangzhou University, Yangzhou, China.

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http://doi.wiley.com/10.1002/jcb.27173
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http://dx.doi.org/10.1002/jcb.27173DOI Listing
November 2018

Trac-looping measures genome structure and chromatin accessibility.

Nat Methods 2018 09 27;15(9):741-747. Epub 2018 Aug 27.

Laboratory of Epigenome Biology, Systems Biology Center, National Heart, Lung and Blood Institute, NIH, Bethesda, MD, USA.

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http://dx.doi.org/10.1038/s41592-018-0107-yDOI Listing
September 2018

Genetic assessment of inbred chicken lines indicates genomic signatures of resistance to Marek's disease.

J Anim Sci Biotechnol 2018 13;9:65. Epub 2018 Sep 13.

1Department of Animal & Avian Sciences, University of Maryland, College Park, MD 20742 USA.

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http://dx.doi.org/10.1186/s40104-018-0281-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6136188PMC
September 2018

Transgenerational transmission of maternal stimulatory experience in domesticated birds.

FASEB J 2018 Sep 27:fj201800762RR. Epub 2018 Sep 27.

National Engineering Laboratory for Animal Breeding, Ministry of Agriculture, College of Animal Science and Technology, China Agricultural University, Beijing, China.

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http://dx.doi.org/10.1096/fj.201800762RRDOI Listing
September 2018

Effects of obesity and metabolic syndrome on cardiovascular outcomes in pediatric kidney transplant recipients: a longitudinal study.

Pediatr Nephrol 2018 08 30;33(8):1419-1428. Epub 2017 Dec 30.

Department of Nephrology, Children's National Health System, Washington, DC, USA.

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http://dx.doi.org/10.1007/s00467-017-3860-8DOI Listing
August 2018

RXRG associated in PPAR signal regulated the differentiation of primordial germ cell.

J Cell Biochem 2018 08 8;119(8):6926-6934. Epub 2018 May 8.

Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology, Yangzhou University, Yangzhou, P.R China.

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http://dx.doi.org/10.1002/jcb.26891DOI Listing
August 2018

Whole-genome bisulfite sequencing of goat skins identifies signatures associated with hair cycling.

BMC Genomics 2018 Aug 28;19(1):638. Epub 2018 Aug 28.

College of Animal Science and Technology, Northwest A&F University, Yangling, 712100, China.

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http://dx.doi.org/10.1186/s12864-018-5002-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6114738PMC
August 2018

Genome Wide Identification of Novel Long Non-coding RNAs and Their Potential Associations With Milk Proteins in Chinese Holstein Cows.

Front Genet 2018 30;9:281. Epub 2018 Jul 30.

Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture and National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, China.

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https://www.frontiersin.org/article/10.3389/fgene.2018.00281
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http://dx.doi.org/10.3389/fgene.2018.00281DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6077245PMC
July 2018

DNA Methylation and Regulatory Elements during Chicken Germline Stem Cell Differentiation.

Stem Cell Reports 2018 06 19;10(6):1793-1806. Epub 2018 Apr 19.

Department of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA. Electronic address:

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http://dx.doi.org/10.1016/j.stemcr.2018.03.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5989647PMC
June 2018

NICD-mediated notch transduction regulates the different fate of chicken primordial germ cells and spermatogonial stem cells.

Cell Biosci 2018 19;8:40. Epub 2018 Jun 19.

1Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology, Yangzhou University, 88 South University Ave, Yangzhou, Jiangsu 225009 People's Republic of China.

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http://dx.doi.org/10.1186/s13578-018-0238-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6009047PMC
June 2018

Increased carotid intima-media thickness in African American pediatric kidney transplant recipients.

Pediatr Transplant 2018 05 8;22(3):e13163. Epub 2018 Feb 8.

Department of Nephrology, Children's National Health System, Washington, DC, USA.

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http://dx.doi.org/10.1111/petr.13163DOI Listing
May 2018

Interaction of the primordial germ cell-specific protein C2EIP with PTCH2 directs differentiation of embryonic stem cells via HH signaling activation.

Cell Death Dis 2018 05 1;9(5):497. Epub 2018 May 1.

Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu, 225009, P.R. China.

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http://dx.doi.org/10.1038/s41419-018-0557-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5923244PMC
May 2018

Gga-miR-130b-3p inhibits MSB1 cell proliferation, migration, invasion, and its downregulation in MD tumor is attributed to hypermethylation.

Oncotarget 2018 May 11;9(36):24187-24198. Epub 2018 May 11.

Department of Animal Genetics and Breeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China.

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http://dx.doi.org/10.18632/oncotarget.24679DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5966247PMC
May 2018

DNA methylation profiles correlated to striped bass sperm fertility.

BMC Genomics 2018 Apr 10;19(1):244. Epub 2018 Apr 10.

Department of Animal and Avian Sciences, University of Maryland, College Park, MD, 20742, USA.

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http://dx.doi.org/10.1186/s12864-018-4548-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5894188PMC
April 2018

Cloning, expression pattern analysis, and subcellular localization of Capra hircus SCD1 gene with production of transgenic mice.

J Cell Biochem 2018 02 24;119(2):2240-2247. Epub 2017 Oct 24.

Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology, Yangzhou University, Yangzhou, China.

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http://dx.doi.org/10.1002/jcb.26386DOI Listing
February 2018

Hsd3b2 associated in modulating steroid hormone synthesis pathway regulates the differentiation of chicken embryonic stem cells into spermatogonial stem cells.

J Cell Biochem 2018 01 23;119(1):1111-1121. Epub 2017 Aug 23.

Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology, Yangzhou University, Yangzhou, China.

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http://doi.wiley.com/10.1002/jcb.26279
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http://dx.doi.org/10.1002/jcb.26279DOI Listing
January 2018

Genome-wide mapping of DNase I hypersensitive sites in rare cell populations using single-cell DNase sequencing.

Nat Protoc 2017 Nov 12;12(11):2342-2354. Epub 2017 Oct 12.

Systems Biology Center, Division of Intramural Research, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland, USA.

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http://dx.doi.org/10.1038/nprot.2017.099DOI Listing
November 2017

CRISPR/Cas9-Mediated Deletion of C1EIS Inhibits Chicken Embryonic Stem Cell Differentiation Into Male Germ Cells (Gallus gallus).

J Cell Biochem 2017 08 21;118(8):2380-2386. Epub 2017 Apr 21.

Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, P.R. China.

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http://dx.doi.org/10.1002/jcb.25900DOI Listing
August 2017

Dynamic expression and regulatory mechanism of TGF-β signaling in chicken embryonic stem cells differentiating into spermatogonial stem cells.

Biosci Rep 2017 08 7;37(4). Epub 2017 Jul 7.

Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu 225009, P.R. China

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http://dx.doi.org/10.1042/BSR20170179DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6434085PMC
August 2017

Long intergenic non-coding RNA GALMD3 in chicken Marek's disease.

Sci Rep 2017 08 31;7(1):10294. Epub 2017 Aug 31.

Department of Animal Genetics and Breeding, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China.

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http://dx.doi.org/10.1038/s41598-017-10900-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5579197PMC
August 2017

Regulation of Hedgehog Signaling in Chicken Embryonic Stem Cells Differentiation Into Male Germ Cells (Gallus).

J Cell Biochem 2017 06 30;118(6):1379-1386. Epub 2016 Nov 30.

Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology,, Yangzhou University, Yangzhou, 225009, China.

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http://doi.wiley.com/10.1002/jcb.25796
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http://dx.doi.org/10.1002/jcb.25796DOI Listing
June 2017

Gga-miR-219b targeting BCL11B suppresses proliferation, migration and invasion of Marek's disease tumor cell MSB1.

Sci Rep 2017 06 26;7(1):4247. Epub 2017 Jun 26.

Department of Animal Genetics and Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China.

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http://dx.doi.org/10.1038/s41598-017-04434-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5484716PMC
June 2017

Characterization of Copy Number Variation's Potential Role in Marek's Disease.

Int J Mol Sci 2017 May 9;18(5). Epub 2017 May 9.

Department of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA.

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http://dx.doi.org/10.3390/ijms18051020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5454933PMC
May 2017

Inducing goat pluripotent stem cells with four transcription factor mRNAs that activate endogenous promoters.

BMC Biotechnol 2017 02 13;17(1):11. Epub 2017 Feb 13.

Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology, Yangzhou University, 88 South University Ave., Yangzhou, Jiangsu, 225009, People's Republic of China.

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http://dx.doi.org/10.1186/s12896-017-0336-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5307868PMC
February 2017

A decision analysis model for KEGG pathway analysis.

BMC Bioinformatics 2016 Oct 6;17(1):407. Epub 2016 Oct 6.

College of Animal Science and Technology, Northwest A&F University, Yangling, 712100, People's Republic of China.

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http://dx.doi.org/10.1186/s12859-016-1285-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5053338PMC
October 2016

Abomasal mucosal immune responses of cattle with limited or continuous exposure to pasture-borne gastrointestinal nematode parasite infection.

Vet Parasitol 2016 Oct 4;229:118-125. Epub 2016 Oct 4.

Department of Department of Avian and Animal Sciences, University of Maryland, College Park, MD 20742, United States. Electronic address:

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http://dx.doi.org/10.1016/j.vetpar.2016.10.005DOI Listing
October 2016

Whole-genome regulation analysis of histone H3 lysin 27 trimethylation in subclinical mastitis cows infected by Staphylococcus aureus.

BMC Genomics 2016 08 8;17:565. Epub 2016 Aug 8.

Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, People's Republic of China.

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http://dx.doi.org/10.1186/s12864-016-2947-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4977872PMC
August 2016

Chicken gga-miR-130a targets HOXA3 and MDFIC and inhibits Marek's disease lymphoma cell proliferation and migration.

Mol Biol Rep 2016 Jul 13;43(7):667-76. Epub 2016 May 13.

Department of Animal Genetics and Breeding, National Engineering Laboratory for Animal Breeding College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China.

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http://dx.doi.org/10.1007/s11033-016-4002-2DOI Listing
July 2016

Transcriptomic Profiling of Spleen in Grass-Fed and Grain-Fed Angus Cattle.

PLoS One 2015 14;10(9):e0135670. Epub 2015 Sep 14.

Department of Animal & Avian Sciences, University of Maryland, College Park, Maryland, 20742, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0135670PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4569079PMC
June 2016

Site-Directed Genome Knockout in Chicken Cell Line and Embryos Can Use CRISPR/Cas Gene Editing Technology.

G3 (Bethesda) 2016 06 1;6(6):1787-92. Epub 2016 Jun 1.

Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China

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http://dx.doi.org/10.1534/g3.116.028803DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4889674PMC
June 2016

Chicken gga-miR-103-3p Targets CCNE1 and TFDP2 and Inhibits MDCC-MSB1 Cell Migration.

G3 (Bethesda) 2016 05 3;6(5):1277-85. Epub 2016 May 3.

Department of Animal Genetics and Breeding, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China

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http://dx.doi.org/10.1534/g3.116.028498DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4856079PMC
May 2016

Genome-Wide H3K4me3 Analysis in Angus Cattle with Divergent Tenderness.

PLoS One 2015 18;10(6):e0115358. Epub 2015 Jun 18.

Department of Animal & Avian Sciences, University of Maryland, College Park, MD, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0115358PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4473007PMC
April 2016

Ruminal Transcriptomic Analysis of Grass-Fed and Grain-Fed Angus Beef Cattle.

PLoS One 2015 19;10(6):e0116437. Epub 2015 Jun 19.

Department of Animal & Avian Sciences, University of Maryland, College Park, MD, 20742, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0116437PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4475051PMC
April 2016

Methylome Analysis in Chickens Immunized with Infectious Laryngotracheitis Vaccine.

PLoS One 2015 24;10(6):e0100476. Epub 2015 Jun 24.

Department of Animal and Avian Sciences, University of Maryland, College Park, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0100476PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4481310PMC
April 2016

Population-genetic properties of differentiated copy number variations in cattle.

Sci Rep 2016 Mar 23;6:23161. Epub 2016 Mar 23.

Animal Genomics and Improvement Laboratory, Agricultural Research Service, USDA, Beltsville, Maryland 20705, USA.

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http://dx.doi.org/10.1038/srep23161DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4804293PMC
March 2016

Chicken gga-miR-181a targets MYBL1 and shows an inhibitory effect on proliferation of Marek's disease virus-transformed lymphoid cell line.

Poult Sci 2015 Nov;94(11):2616-21

Department of Animal Genetics and Breeding, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China

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http://dx.doi.org/10.3382/ps/pev289DOI Listing
November 2015

The conservation and signatures of lincRNAs in Marek's disease of chicken.

Sci Rep 2015 Oct 16;5:15184. Epub 2015 Oct 16.

Department of Animal &Avian Sciences, University of Maryland, College Park, MD 20742, USA.

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http://dx.doi.org/10.1038/srep15184DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4608010PMC
October 2015

Genome-wide identification of copy number variations between two chicken lines that differ in genetic resistance to Marek's disease.

BMC Genomics 2015 Oct 23;16:843. Epub 2015 Oct 23.

Department of Animal Genetics and Breeding, College of Animal Science, China Agricultural University, Beijing, 100193, China.

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http://dx.doi.org/10.1186/s12864-015-2080-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4619206PMC
October 2015

∆ DNMT3B4-del Contributes to Aberrant DNA Methylation Patterns in Lung Tumorigenesis.

EBioMedicine 2015 Oct 7;2(10):1340-50. Epub 2015 Sep 7.

Department of Oncology and Diagnostic Sciences, University of Maryland School of Dentistry, University of Maryland, 650 W Baltimore St, Baltimore, MD 21201, USA ; Marlene and Stewart Greenebaum Cancer Center, University of Maryland, 22 S Greene St, Baltimore, MD 21201, USA.

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http://dx.doi.org/10.1016/j.ebiom.2015.09.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4634842PMC
October 2015

Co-expression analysis of fetal weight-related genes in ovine skeletal muscle during mid and late fetal development stages.

Int J Biol Sci 2014 11;10(9):1039-50. Epub 2014 Sep 11.

1. National Center for Molecular Genetics and Breeding of Animal, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100193, China;

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http://dx.doi.org/10.7150/ijbs.9737DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4183924PMC
May 2015

Histone modifications induced by MDV infection at early cytolytic and latency phases.

BMC Genomics 2015 Apr 18;16:311. Epub 2015 Apr 18.

Department of Animal & Avian Sciences, University of Maryland, College Park, MD, 20742, USA.

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http://dx.doi.org/10.1186/s12864-015-1492-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4404578PMC
April 2015

Genomic signatures reveal new evidences for selection of important traits in domestic cattle.

Mol Biol Evol 2015 Mar 26;32(3):711-25. Epub 2014 Nov 26.

Animal Genomics and Improvement Laboratory, Agricultural Research Service, USDA, Beltsville, MD 20705, USA

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http://dx.doi.org/10.1093/molbev/msu333DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4441790PMC
March 2015

Epigenetics and animal virus infections.

Front Genet 2015 4;6:48. Epub 2015 Mar 4.

Genética Molecular, Lab Chromatin Structure and Transcription, Instituto de Fisiología Celular, Universidad Nacional Autónoma de México Mexico City, Mexico.

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http://dx.doi.org/10.3389/fgene.2015.00048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4349154PMC
March 2015

Genome-wide mapping of DNase I hypersensitive sites and association analysis with gene expression in MSB1 cells.

Front Genet 2014 13;5:308. Epub 2014 Oct 13.

Department of Animal and Avian Sciences, University of Maryland College Park, MD, USA.

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http://dx.doi.org/10.3389/fgene.2014.00308DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4195362PMC
October 2014

KEGG-PATH: Kyoto encyclopedia of genes and genomes-based pathway analysis using a path analysis model.

Mol Biosyst 2014 Jul;10(9):2441-7

College of Sciences, Northwest A&F University, Yangling, 712100, P. R. China.

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http://dx.doi.org/10.1039/c4mb00287cDOI Listing
July 2014

A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle.

Funct Integr Genomics 2014 Jun 10;14(2):333-9. Epub 2014 Apr 10.

GEL: Bovine Functional Genomics Laboratory, BARC, USDA-ARS, Building 306, Room 111, BARC-East, Beltsville, MD, 20705, USA.

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http://link.springer.com/10.1007/s10142-014-0371-6
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http://dx.doi.org/10.1007/s10142-014-0371-6DOI Listing
June 2014

Host genetic resistance to Marek's disease sustains protective efficacy of herpesvirus of turkey in both experimental and commercial lines of chickens.

Vaccine 2014 Apr 13;32(16):1820-7. Epub 2014 Feb 13.

USDA, Agriculture Research Service, Avian Disease and Oncology Laboratory, East Lansing, MI 48823, USA. Electronic address:

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http://dx.doi.org/10.1016/j.vaccine.2014.01.092DOI Listing
April 2014

Cloning of the Xuhuai goat PPARγ gene and the preparation of transgenic sheep.

Biochem Genet 2013 Aug 5;51(7-8):543-53. Epub 2013 Apr 5.

Academy of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China.

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http://dx.doi.org/10.1007/s10528-013-9585-xDOI Listing
August 2013

Comparative Analysis of CNV Calling Algorithms: Literature Survey and a Case Study Using Bovine High-Density SNP Data.

Microarrays (Basel) 2013 Jun 25;2(3):171-85. Epub 2013 Jun 25.

Bovine Functional Genomics Laboratory, BARC, BA, USDA-ARS, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.3390/microarrays2030171DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5003459PMC
June 2013

DNA methylation down-regulates EGFR expression in chickens.

Avian Dis 2013 Jun;57(2 Suppl):366-71

Department of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA.

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http://dx.doi.org/10.1637/10343-090112-Reg.1DOI Listing
June 2013

Histone methylation analysis and pathway predictions in chickens after MDV infection.

PLoS One 2012 26;7(7):e41849. Epub 2012 Jul 26.

Department of Animal and Avian Sciences, University of Maryland, College Park, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0041849PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3406056PMC
April 2013

Genome-wide bovine H3K27me3 modifications and the regulatory effects on genes expressions in peripheral blood lymphocytes.

PLoS One 2012 28;7(6):e39094. Epub 2012 Jun 28.

Key Laboratory of Agricultural Animal Genetics and Breeding, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, PR China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0039094PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3386284PMC
March 2013

WaveSeq: a novel data-driven method of detecting histone modification enrichments using wavelets.

PLoS One 2012 28;7(9):e45486. Epub 2012 Sep 28.

Department of Animal and Avian Sciences, University of Maryland, College Park, MD, USA.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0045486PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3461018PMC
March 2013

Isolation of chicken embryonic stem cell and preparation of chicken chimeric model.

Mol Biol Rep 2013 Mar 29;40(3):2149-56. Epub 2012 Nov 29.

College of Animal Science and Technology, Yangzhou University, Yangzhou, 225009, People's Republic of China.

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http://dx.doi.org/10.1007/s11033-012-2274-8DOI Listing
March 2013

Genome-wide copy number variant analysis in inbred chickens lines with different susceptibility to Marek's disease.

G3 (Bethesda) 2013 Feb 1;3(2):217-23. Epub 2013 Feb 1.

Department of Animal & Avian Sciences, University of Maryland, College Park, Maryland 20742, USA.

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http://dx.doi.org/10.1534/g3.112.005132DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3564982PMC
February 2013

Marek's disease virus infection induces widespread differential chromatin marks in inbred chicken lines.

BMC Genomics 2012 Oct 16;13:557. Epub 2012 Oct 16.

Department of Animal & Avian Sciences, University of Maryland, College Park, MD, USA.

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http://dx.doi.org/10.1186/1471-2164-13-557DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3505159PMC
October 2012

Comprehensive analysis of gene-environmental interactions with temporal gene expression profiles in Pseudomonas aeruginosa.

PLoS One 2012 27;7(4):e35993. Epub 2012 Apr 27.

Department of Oral Biology, Department of Medical Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0035993PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338772PMC
September 2012

Functional genomic analysis of variation on beef tenderness induced by acute stress in angus cattle.

Comp Funct Genomics 2012 12;2012:756284. Epub 2012 Apr 12.

College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi 712100, China.

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http://dx.doi.org/10.1155/2012/756284DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3332163PMC
August 2012

miRNA-dysregulation associated with tenderness variation induced by acute stress in Angus cattle.

J Anim Sci Biotechnol 2012 Jun 1;3(1):12. Epub 2012 Jun 1.

College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China.

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http://dx.doi.org/10.1186/2049-1891-3-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3436641PMC
June 2012

Muscle transcriptomic analyses in Angus cattle with divergent tenderness.

Mol Biol Rep 2012 Apr 7;39(4):4185-93. Epub 2011 Sep 7.

College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China.

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http://dx.doi.org/10.1007/s11033-011-1203-6DOI Listing
April 2012

Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle.

Funct Integr Genomics 2012 Mar 18;12(1):81-92. Epub 2011 Sep 18.

Bovine Functional Genomics Laboratory, ANRI, USDA-ARS, Building 200, Room 124B, BARC-East, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.1007/s10142-011-0252-1DOI Listing
March 2012

MiRNA expression signatures induced by Marek's disease virus infection in chickens.

Genomics 2012 Mar 7;99(3):152-9. Epub 2011 Dec 7.

Department of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA.

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http://dx.doi.org/10.1016/j.ygeno.2011.11.004DOI Listing
March 2012

Targeting Werner syndrome protein sensitizes U-2 OS osteosarcoma cells to selenium-induced DNA damage response and necrotic death.

Biochem Biophys Res Commun 2012 Mar 27;420(1):24-8. Epub 2012 Feb 27.

Department of Nutrition and Food Science, University of Maryland, College Park, MD 20742, USA.

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http://dx.doi.org/10.1016/j.bbrc.2012.02.104DOI Listing
March 2012

Encapsulation of selenium in chitosan nanoparticles improves selenium availability and protects cells from selenium-induced DNA damage response.

J Nutr Biochem 2011 Dec 2;22(12):1137-42. Epub 2011 Feb 2.

Department of Nutrition and Food Science, University of Maryland, College Park, MD 20742, USA.

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http://dx.doi.org/10.1016/j.jnutbio.2010.09.014DOI Listing
December 2011

Differential gene expression by RamA in ciprofloxacin-resistant Salmonella Typhimurium.

PLoS One 2011 19;6(7):e22161. Epub 2011 Jul 19.

Joint Institute for Food Safety and Applied Nutrition, and Department of Nutrition and Food Science, University of Maryland, College Park, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0022161PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3139621PMC
December 2011

Temporal transcriptome changes induced by MDV in Marek's disease-resistant and -susceptible inbred chickens.

BMC Genomics 2011 Oct 12;12:501. Epub 2011 Oct 12.

Department of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA.

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http://dx.doi.org/10.1186/1471-2164-12-501DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3269463PMC
October 2011

A comparative evaluation of the protective efficacy of rMd5deltaMeq and CVI988/ Rispens against a vv+ strain of Marek's disease virus infection in a series of recombinant congenic strains of White Leghorn chickens.

Avian Dis 2011 Sep;55(3):384-90

United States Department of Agriculture, Agriculture Research Service, Avian Disease and Oncology Laboratory, 3606 E. Mount Hope Road, East Lansing, MI 48823, USA.

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http://dx.doi.org/10.1637/9524-091310-Reg.1DOI Listing
September 2011

Analysis of recent segmental duplications in the bovine genome.

BMC Genomics 2009 Dec 1;10:571. Epub 2009 Dec 1.

USDA, ARS, ANRI, Bovine Functional Genomics Laboratory, Beltsville, Maryland 20705, USA.

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http://dx.doi.org/10.1186/1471-2164-10-571DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2796684PMC
December 2009

Effect of genotype, environment, and their interaction on chemical composition and antioxidant properties of low-linolenic soybeans grown in Maryland.

J Agric Food Chem 2009 Nov;57(21):10163-74

Department of Nutrition and Food Science, University of Maryland, College Park, Maryland 20742, USA.

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http://dx.doi.org/10.1021/jf902344hDOI Listing
November 2009

A genome-wide analysis of array-based comparative genomic hybridization (CGH) data to detect intra-species variations and evolutionary relationships.

PLoS One 2009 Nov 24;4(11):e7978. Epub 2009 Nov 24.

Department of Animal and Avian Sciences, University of Maryland, College Park, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0007978PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2777320PMC
November 2009

Characterizing gene expressions based on their temporal observations.

J Biomed Biotechnol 2009 14;2009:357937. Epub 2009 Apr 14.

Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20742, USA.

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http://dx.doi.org/10.1155/2009/357937DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2668864PMC
May 2009

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Authors:
Christine G Elsik Ross L Tellam Kim C Worley Richard A Gibbs Donna M Muzny George M Weinstock David L Adelson Evan E Eichler Laura Elnitski Roderic Guigó Debora L Hamernik Steve M Kappes Harris A Lewin David J Lynn Frank W Nicholas Alexandre Reymond Monique Rijnkels Loren C Skow Evgeny M Zdobnov Lawrence Schook James Womack Tyler Alioto Stylianos E Antonarakis Alex Astashyn Charles E Chapple Hsiu-Chuan Chen Jacqueline Chrast Francisco Câmara Olga Ermolaeva Charlotte N Henrichsen Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Felix Kokocinski Melissa Landrum Donna Maglott Kim Pruitt Victor Sapojnikov Stephen M Searle Victor Solovyev Alexandre Souvorov Catherine Ucla Carine Wyss Juan M Anzola Daniel Gerlach Eran Elhaik Dan Graur Justin T Reese Robert C Edgar John C McEwan Gemma M Payne Joy M Raison Thomas Junier Evgenia V Kriventseva Eduardo Eyras Mireya Plass Ravikiran Donthu Denis M Larkin James Reecy Mary Q Yang Lin Chen Ze Cheng Carol G Chitko-McKown George E Liu Lakshmi K Matukumalli Jiuzhou Song Bin Zhu Daniel G Bradley Fiona S L Brinkman Lilian P L Lau Matthew D Whiteside Angela Walker Thomas T Wheeler Theresa Casey J Bruce German Danielle G Lemay Nauman J Maqbool Adrian J Molenaar Seongwon Seo Paul Stothard Cynthia L Baldwin Rebecca Baxter Candice L Brinkmeyer-Langford Wendy C Brown Christopher P Childers Timothy Connelley Shirley A Ellis Krista Fritz Elizabeth J Glass Carolyn T A Herzig Antti Iivanainen Kevin K Lahmers Anna K Bennett C Michael Dickens James G R Gilbert Darren E Hagen Hanni Salih Jan Aerts Alexandre R Caetano Brian Dalrymple Jose Fernando Garcia Clare A Gill Stefan G Hiendleder Erdogan Memili Diane Spurlock John L Williams Lee Alexander Michael J Brownstein Leluo Guan Robert A Holt Steven J M Jones Marco A Marra Richard Moore Stephen S Moore Andy Roberts Masaaki Taniguchi Richard C Waterman Joseph Chacko Mimi M Chandrabose Andy Cree Marvin Diep Dao Huyen H Dinh Ramatu Ayiesha Gabisi Sandra Hines Jennifer Hume Shalini N Jhangiani Vandita Joshi Christie L Kovar Lora R Lewis Yih-Shin Liu John Lopez Margaret B Morgan Ngoc Bich Nguyen Geoffrey O Okwuonu San Juana Ruiz Jireh Santibanez Rita A Wright Christian Buhay Yan Ding Shannon Dugan-Rocha Judith Herdandez Michael Holder Aniko Sabo Amy Egan Jason Goodell Katarzyna Wilczek-Boney Gerald R Fowler Matthew Edward Hitchens Ryan J Lozado Charles Moen David Steffen James T Warren Jingkun Zhang Readman Chiu Jacqueline E Schein K James Durbin Paul Havlak Huaiyang Jiang Yue Liu Xiang Qin Yanru Ren Yufeng Shen Henry Song Stephanie Nicole Bell Clay Davis Angela Jolivet Johnson Sandra Lee Lynne V Nazareth Bella Mayurkumar Patel Ling-Ling Pu Selina Vattathil Rex Lee Williams Stacey Curry Cerissa Hamilton Erica Sodergren David A Wheeler Wes Barris Gary L Bennett André Eggen Ronnie D Green Gregory P Harhay Matthew Hobbs Oliver Jann John W Keele Matthew P Kent Sigbjørn Lien Stephanie D McKay Sean McWilliam Abhirami Ratnakumar Robert D Schnabel Timothy Smith Warren M Snelling Tad S Sonstegard Roger T Stone Yoshikazu Sugimoto Akiko Takasuga Jeremy F Taylor Curtis P Van Tassell Michael D Macneil Antonio R R Abatepaulo Colette A Abbey Virpi Ahola Iassudara G Almeida Ariel F Amadio Elen Anatriello Suria M Bahadue Fernando H Biase Clayton R Boldt Jeffery A Carroll Wanessa A Carvalho Eliane P Cervelatti Elsa Chacko Jennifer E Chapin Ye Cheng Jungwoo Choi Adam J Colley Tatiana A de Campos Marcos De Donato Isabel K F de Miranda Santos Carlo J F de Oliveira Heather Deobald Eve Devinoy Kaitlin E Donohue Peter Dovc Annett Eberlein Carolyn J Fitzsimmons Alessandra M Franzin Gustavo R Garcia Sem Genini Cody J Gladney Jason R Grant Marion L Greaser Jonathan A Green Darryl L Hadsell Hatam A Hakimov Rob Halgren Jennifer L Harrow Elizabeth A Hart Nicola Hastings Marta Hernandez Zhi-Liang Hu Aaron Ingham Terhi Iso-Touru Catherine Jamis Kirsty Jensen Dimos Kapetis Tovah Kerr Sari S Khalil Hasan Khatib Davood Kolbehdari Charu G Kumar Dinesh Kumar Richard Leach Justin C-M Lee Changxi Li Krystin M Logan Roberto Malinverni Elisa Marques William F Martin Natalia F Martins Sandra R Maruyama Raffaele Mazza Kim L McLean Juan F Medrano Barbara T Moreno Daniela D Moré Carl T Muntean Hari P Nandakumar Marcelo F G Nogueira Ingrid Olsaker Sameer D Pant Francesca Panzitta Rosemeire C P Pastor Mario A Poli Nathan Poslusny Satyanarayana Rachagani Shoba Ranganathan Andrej Razpet Penny K Riggs Gonzalo Rincon Nelida Rodriguez-Osorio Sandra L Rodriguez-Zas Natasha E Romero Anne Rosenwald Lillian Sando Sheila M Schmutz Libing Shen Laura Sherman Bruce R Southey Ylva Strandberg Lutzow Jonathan V Sweedler Imke Tammen Bhanu Prakash V L Telugu Jennifer M Urbanski Yuri T Utsunomiya Chris P Verschoor Ashley J Waardenberg Zhiquan Wang Robert Ward Rosemarie Weikard Thomas H Welsh Stephen N White Laurens G Wilming Kris R Wunderlich Jianqi Yang Feng-Qi Zhao

Science 2009 Apr;324(5926):522-8

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http://dx.doi.org/10.1126/science.1169588DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2943200PMC
April 2009