Publications by authors named "Jinmiao Chen"

79Publications

Distal remodeling after operations for extensive acute aortic dissection.

Ann Thorac Surg 2020 Oct 20. Epub 2020 Oct 20.

Department of Cardiovascular Surgery, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai, China.

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http://dx.doi.org/10.1016/j.athoracsur.2020.08.031DOI Listing
October 2020

Combinatorial Single-Cell Analyses of Granulocyte-Monocyte Progenitor Heterogeneity Reveals an Early Uni-potent Neutrophil Progenitor.

Immunity 2020 Aug 23;53(2):303-318.e5. Epub 2020 Jun 23.

Singapore Immunology Network (SIgN), A∗STAR (Agency for Science, Technology and Research), Biopolis, Singapore 138648, Singapore; School of Biological Sciences, Nanyang Technological University, Singapore 637551, Singapore; Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117545, Singapore; State Key Laboratory of Experimental Hematology, Institute of Hematology, Chinese Academy of Medical Sciences & Peking Union Medical College, Tianjin 300020, China; National Cancer Centre Singapore, Singapore 169610, Singapore. Electronic address:

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http://dx.doi.org/10.1016/j.immuni.2020.06.005DOI Listing
August 2020

A benchmark of batch-effect correction methods for single-cell RNA sequencing data.

Genome Biol 2020 01 16;21(1):12. Epub 2020 Jan 16.

Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), 8A Biomedical Grove, Immunos Building, Level 3, Singapore, 138648, Singapore.

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http://dx.doi.org/10.1186/s13059-019-1850-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6964114PMC
January 2020

IL-13-driven alterations in hepatic cholesterol handling contributes to hypercholesterolemia in a rat model of minimal change disease.

Clin Sci (Lond) 2020 01;134(2):225-237

Department of Paediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117599, Singapore.

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http://dx.doi.org/10.1042/CS20190961DOI Listing
January 2020

Optimizations of stent and tissue leaflets in a new surgical bovine pericardial valve.

J Thorac Dis 2019 Nov;11(11):4855-4858

Department of Cardiac Surgery, Zhongshan Hospital, Fudan University, Shanghai 200032, China.

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http://dx.doi.org/10.21037/jtd.2019.10.32DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6940270PMC
November 2019

Association between fine particulate matter air pollution and acute aortic dissections: A time-series study in Shanghai, China.

Chemosphere 2020 Mar 12;243:125357. Epub 2019 Nov 12.

Department of Cardiac Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200032, China. Electronic address:

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http://dx.doi.org/10.1016/j.chemosphere.2019.125357DOI Listing
March 2020

Large-Scale HLA Tetramer Tracking of T Cells during Dengue Infection Reveals Broad Acute Activation and Differentiation into Two Memory Cell Fates.

Immunity 2019 12 19;51(6):1119-1135.e5. Epub 2019 Nov 19.

Singapore Immunology Network, Agency for Science, Technology and Research, Singapore 138648, Singapore; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA. Electronic address:

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http://dx.doi.org/10.1016/j.immuni.2019.10.007DOI Listing
December 2019

Fate Mapping via Ms4a3-Expression History Traces Monocyte-Derived Cells.

Cell 2019 09;178(6):1509-1525.e19

Shanghai Institute of Immunology, Department of Immunology and Microbiology, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China; Singapore Immunology Network, Agency for Science, Technology and Research, Singapore 138648, Singapore; Translational Immunology Institute, SingHealth Duke-NUS Academic Medical Centre, Singapore, Singapore. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2019.08.009DOI Listing
September 2019

Single-Cell Analysis of Human Mononuclear Phagocytes Reveals Subset-Defining Markers and Identifies Circulating Inflammatory Dendritic Cells.

Immunity 2019 09 29;51(3):573-589.e8. Epub 2019 Aug 29.

Singapore Immunology Network, A(∗)STAR, 8A Biomedical Grove, Immunos Building, Singapore 138648, Singapore; Translational Immunology Institute, Singhealth/Duke-NUS Academic Medical Centre, the Academia, 20 College Road, Discovery Tower Level 8, Singapore 169856, Singapore. Electronic address:

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http://dx.doi.org/10.1016/j.immuni.2019.08.008DOI Listing
September 2019

A Novel, Five-Marker Alternative to CD16-CD14 Gating to Identify the Three Human Monocyte Subsets.

Front Immunol 2019 26;10:1761. Epub 2019 Jul 26.

Singapore Immunology Network (SIgN), ASTAR Research Entities, Singapore, Singapore.

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http://dx.doi.org/10.3389/fimmu.2019.01761DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6676221PMC
October 2020

Isolated reoperation for tricuspid regurgitation after left-sided valve surgery: technique evolution.

Eur J Cardiothorac Surg 2020 01;57(1):142-150

Department of Cardiac Surgery, Zhongshan Hospital, Fudan University, Shanghai, China.

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http://dx.doi.org/10.1093/ejcts/ezz160DOI Listing
January 2020

Studies on B Cells in the Fruit-Eating Black Flying Fox (.

Front Immunol 2019 14;10:489. Epub 2019 Mar 14.

Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.

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http://dx.doi.org/10.3389/fimmu.2019.00489DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6428034PMC
September 2020

A Subset of Type I Conventional Dendritic Cells Controls Cutaneous Bacterial Infections through VEGFα-Mediated Recruitment of Neutrophils.

Immunity 2019 04 27;50(4):1069-1083.e8. Epub 2019 Mar 27.

Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A(∗)STAR), 8A Biomedical Grove, Biopolis, Singapore 138648, Singapore; Skin Research Institute of Singapore (SRIS), Agency for Science, Technology and Research (A(∗)STAR), 11 Mandalay Rd., Singapore 308232, Singapore. Electronic address:

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http://dx.doi.org/10.1016/j.immuni.2019.03.001DOI Listing
April 2019

Corrigendum: A Single-Cell Sequencing Guide for Immunologists.

Front Immunol 2019 26;10:278. Epub 2019 Feb 26.

Singapore Immunology Network, Agency for Science, Technology and Research, Singapore, Singapore.

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http://dx.doi.org/10.3389/fimmu.2019.00278DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6400142PMC
February 2019

Single-Cell RNA Sequencing of Microglia throughout the Mouse Lifespan and in the Injured Brain Reveals Complex Cell-State Changes.

Immunity 2019 01 21;50(1):253-271.e6. Epub 2018 Nov 21.

Boston Children's Hospital, F.M. Kirby Neurobiology Center, Boston, MA, USA; Harvard Medical School, Boston, MA, USA; Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA; Howard Hughes Medical Institute, Boston Children's Hospital, Boston, MA, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10747613183048
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http://dx.doi.org/10.1016/j.immuni.2018.11.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6655561PMC
January 2019

A Single-Cell Sequencing Guide for Immunologists.

Front Immunol 2018 23;9:2425. Epub 2018 Oct 23.

Singapore Immunology Network, Agency for Science, Technology and Research, Singapore, Singapore.

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https://www.frontiersin.org/article/10.3389/fimmu.2018.02425
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http://dx.doi.org/10.3389/fimmu.2018.02425DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6205970PMC
September 2019

Influenza A Virus Facilitates Its Infectivity by Activating p53 to Inhibit the Expression of Interferon-Induced Transmembrane Proteins.

Front Immunol 2018 31;9:1193. Epub 2018 May 31.

Singapore Immunology Network, Agency for Science, Technology and Research (ASTAR), Singapore, Singapore.

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http://dx.doi.org/10.3389/fimmu.2018.01193DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5990591PMC
August 2019

Histamine deficiency aggravates cardiac injury through miR-206/216b-Atg13 axis-mediated autophagic-dependant apoptosis.

Cell Death Dis 2018 06 7;9(6):694. Epub 2018 Jun 7.

Shanghai Institute of Cardiovascular Diseases, Zhongshan Hospital, Institutes of Biomedical Sciences, Fudan University, Shanghai, 200032, China.

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http://dx.doi.org/10.1038/s41419-018-0723-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5992227PMC
June 2018

Hemogenic Endothelial Fate Mapping Reveals Dual Developmental Origin of Mast Cells.

Immunity 2018 06 29;48(6):1160-1171.e5. Epub 2018 May 29.

Aix-Marseille University, Centre National de la Recherche Scientifique (CNRS), Institut National de la Santé et de la Recherche Médicale (INSERM), Centre d'Immunologie de Marseille-Luminy (CIML), Marseille, France. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10747613183019
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http://dx.doi.org/10.1016/j.immuni.2018.04.025DOI Listing
June 2018

Risk factors associated with perioperative morbidity and mortality following isolated tricuspid valve replacement.

J Surg Res 2018 01;221:224-231

Department of Cardiac Surgery, Zhongshan Hospital, Fudan University, Shanghai, China; Shanghai Institute of Cardiovascular Diseases, Zhongshan Hospital, Shanghai, China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00224804173053
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http://dx.doi.org/10.1016/j.jss.2017.08.014DOI Listing
January 2018

Prosthetic valve endocarditis in patients on hemodialysis.

Int J Cardiol 2018 03 6;254:264. Epub 2017 Dec 6.

Department of Cardiac Surgery, Zhongshan Hospital, Fudan University, Shanghai, China. Electronic address:

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http://dx.doi.org/10.1016/j.ijcard.2017.06.086DOI Listing
March 2018

Constructing cell lineages from single-cell transcriptomes.

Mol Aspects Med 2018 02 26;59:95-113. Epub 2017 Nov 26.

Singapore Immunology Network (SIgN), A*STAR, 8A Biomedical Grove, Immunos Building, Level 4, Singapore 138648, Singapore.

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https://linkinghub.elsevier.com/retrieve/pii/S00982997173005
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http://dx.doi.org/10.1016/j.mam.2017.10.004DOI Listing
February 2018

Contemporary In-Hospital and Long-Term Outcomes of Surgical Management for Fungal Endocarditis.

Int Heart J 2017 Aug 10;58(4):516-520. Epub 2017 Jul 10.

Department of Cardiac Surgery, Zhongshan Hospital, Fudan University.

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http://dx.doi.org/10.1536/ihj.17-049DOI Listing
August 2017

Intrahepatic CD206 macrophages contribute to inflammation in advanced viral-related liver disease.

J Hepatol 2017 09 5;67(3):490-500. Epub 2017 May 5.

Program in Emerging Infectious Diseases, Duke-NUS Medical School, 8 College Road, Singapore 169857, Singapore; Singapore Immunology Network, A*STAR, 8A Biomedical Grove, Immunos Building, Level 4, Singapore 138648, Singapore. Electronic address:

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http://dx.doi.org/10.1016/j.jhep.2017.04.023DOI Listing
September 2017

Generation of an induced pluripotent stem cell line from a Loeys-Dietz syndrome patient with transforming growth factor-beta receptor-2 gene mutation.

Stem Cell Res 2017 04 15;20:115-117. Epub 2017 Mar 15.

Department of Cardiovascular Surgery, Zhongshan Hospital, Fudan University, Shanghai, China. Electronic address:

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http://dx.doi.org/10.1016/j.scr.2017.03.012DOI Listing
April 2017

Clinical Characteristics and Surgical Treatment of Infective Endocarditis With Bicuspid Aortic Valve.

Int Heart J 2017 Apr 27;58(2):220-224. Epub 2017 Mar 27.

Department of Cardiac Surgery, Zhongshan Hospital, Fudan University.

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http://dx.doi.org/10.1536/ihj.16-284DOI Listing
April 2017

Aggravated myocardial infarction-induced cardiac remodeling and heart failure in histamine-deficient mice.

Sci Rep 2017 03 8;7:44007. Epub 2017 Mar 8.

Shanghai Institute of Cardiovascular Diseases, Zhongshan Hospital, and Institutes of Biomedical Sciences, Fudan University, Shanghai, 200032, China.

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http://dx.doi.org/10.1038/srep44007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5341031PMC
March 2017

Novel role of Vav1-Rac1 pathway in actin cytoskeleton regulation in interleukin-13-induced minimal change-like nephropathy.

Clin Sci (Lond) 2016 Dec 5;130(24):2317-2327. Epub 2016 Oct 5.

Department of Paediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117599, Singapore

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http://dx.doi.org/10.1042/CS20160312DOI Listing
December 2016

Cytofkit: A Bioconductor Package for an Integrated Mass Cytometry Data Analysis Pipeline.

PLoS Comput Biol 2016 Sep 23;12(9):e1005112. Epub 2016 Sep 23.

Agency for Science, Technology and Research (A*STAR), Singapore Immunology Network (SIgN), Singapore.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5035035PMC
http://dx.doi.org/10.1371/journal.pcbi.1005112DOI Listing
September 2016

Mpath maps multi-branching single-cell trajectories revealing progenitor cell progression during development.

Nat Commun 2016 06 30;7:11988. Epub 2016 Jun 30.

Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), 8A Biomedical Grove, #03-06, Singapore 138648, Singapore.

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http://dx.doi.org/10.1038/ncomms11988DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4931327PMC
June 2016

flowAI: automatic and interactive anomaly discerning tools for flow cytometry data.

Bioinformatics 2016 08 10;32(16):2473-80. Epub 2016 Apr 10.

Singapore Immunology Network (SIgN), Agency for Science Technology and Research (A*STAR), Singapore 138648, Singapore.

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http://dx.doi.org/10.1093/bioinformatics/btw191DOI Listing
August 2016

Purification, Visualization, and Molecular Signature of Neural Stem Cells.

Stem Cells Dev 2016 Jan 16;25(2):189-201. Epub 2015 Nov 16.

1 Neural Stem Cell Laboratory, Institute of Medical Biology , Singapore, Singapore .

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http://dx.doi.org/10.1089/scd.2015.0190DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770853PMC
January 2016

CD103(+) Dendritic Cells Control Th17 Cell Function in the Lung.

Cell Rep 2015 Sep 10;12(11):1789-801. Epub 2015 Sep 10.

Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A(∗)STAR), Singapore 138648, Singapore. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2015.08.030DOI Listing
September 2015

Histamine deficiency exacerbates myocardial injury in acute myocardial infarction through impaired macrophage infiltration and increased cardiomyocyte apoptosis.

Sci Rep 2015 Aug 17;5:13131. Epub 2015 Aug 17.

1] Shanghai Institute of Cardiovascular Diseases, Zhongshan Hospital, Fudan University, Shanghai, 200032, China [2] Institutes of Biomedical Sciences, Fudan University, Shanghai, China.

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http://dx.doi.org/10.1038/srep13131DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642534PMC
August 2015

Mapping the Diversity of Follicular Helper T Cells in Human Blood and Tonsils Using High-Dimensional Mass Cytometry Analysis.

Cell Rep 2015 Jun 11;11(11):1822-33. Epub 2015 Jun 11.

Agency for Science, Technology and Research (A(∗)STAR), Singapore Immunology Network (SIgN), Singapore 138648, Singapore. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2015.05.022DOI Listing
June 2015

Human monocytes undergo functional re-programming during sepsis mediated by hypoxia-inducible factor-1α.

Immunity 2015 Mar 3;42(3):484-98. Epub 2015 Mar 3.

Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A(∗)STAR), Biopolis, #04-06 Immunos building, 8A Biomedical Grove, Singapore 138648, Singapore. Electronic address:

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http://dx.doi.org/10.1016/j.immuni.2015.02.001DOI Listing
March 2015

MicroRNA expression profiling of human blood monocyte subsets highlights functional differences.

Immunology 2015 Jul;145(3):404-16

Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.

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http://dx.doi.org/10.1111/imm.12456DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4479539PMC
July 2015

The transcriptional stress response of Candida albicans to weak organic acids.

G3 (Bethesda) 2015 Jan 29;5(4):497-505. Epub 2015 Jan 29.

Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore 138648, Singapore School of Biological Sciences, Nanyang Technological University, Singapore 637551, Singapore

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http://g3journal.org/lookup/doi/10.1534/g3.114.015941
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http://dx.doi.org/10.1534/g3.114.015941DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390566PMC
January 2015

Metformin as adjunct antituberculosis therapy.

Sci Transl Med 2014 Nov;6(263):263ra159

Singapore Immunology Network, Agency for Science, Technology and Research (A*STAR), Singapore 138648, Singapore. University Hospital Basel, University of Basel, Basel 4031, Switzerland.

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http://stm.sciencemag.org/content/scitransmed/6/263/263ra159
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http://stm.sciencemag.org/cgi/doi/10.1126/scitranslmed.30098
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http://dx.doi.org/10.1126/scitranslmed.3009885DOI Listing
November 2014

High-dimensional analysis of the murine myeloid cell system.

Nat Immunol 2014 Dec 12;15(12):1181-9. Epub 2014 Oct 12.

Agency for Science, Technology and Research (A*STAR), Singapore Immunology Network (SIgN), Singapore.

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http://dx.doi.org/10.1038/ni.3006DOI Listing
December 2014

Mapping of HPV transcripts in four human cervical lesions using RNAseq suggests quantitative rearrangements during carcinogenic progression.

Virology 2014 Aug 14;462-463:14-24. Epub 2014 Jun 14.

Institute of Medical Biology A*STAR, Biopolis, 8A Biomedical Grove, Immunos, Singapore 138648, Singapore.

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http://dx.doi.org/10.1016/j.virol.2014.05.026DOI Listing
August 2014

Single-cell mRNA profiling identifies progenitor subclasses in neurospheres.

Stem Cells Dev 2012 Dec 10;21(18):3351-62. Epub 2012 Sep 10.

Neural Stem Cell Laboratory, Institute of Medical Biology, Singapore, Singapore.

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http://dx.doi.org/10.1089/scd.2012.0232DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4733327PMC
December 2012

Aqueous cytokine and chemokine analysis in uveitis associated with tuberculosis.

Mol Vis 2012 2;18:565-73. Epub 2012 Mar 2.

Singapore National Eye Centre, Singapore.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3325289PMC
July 2012

Calcineurin/NFAT signalling inhibits myeloid haematopoiesis.

EMBO Mol Med 2012 Apr 7;4(4):269-82. Epub 2012 Feb 7.

Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.

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http://dx.doi.org/10.1002/emmm.201100207DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3376854PMC
April 2012

miRNA studies in in vitro and in vivo activated hepatic stellate cells.

World J Gastroenterol 2011 Jun;17(22):2748-73

Institute of Bioengineering and Nanotechnology, 31 Biopolis Way, The Nanos #04-01, Singapore 138669, Singapore.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3122263PMC
http://dx.doi.org/10.3748/wjg.v17.i22.DOI Listing
June 2011

Segmented-memory recurrent neural networks.

IEEE Trans Neural Netw 2009 Aug 14;20(8):1267-80. Epub 2009 Jul 14.

School of Computer Engineering, Nanyang Technological University, Singapore 639798, Singapore.

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http://dx.doi.org/10.1109/TNN.2009.2022980DOI Listing
August 2009

Cascaded bidirectional recurrent neural networks for protein secondary structure prediction.

IEEE/ACM Trans Comput Biol Bioinform 2007 Oct-Dec;4(4):572-82

School of Computer Engineering, Nanyang Technological University, Singaporepg.

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http://dx.doi.org/10.1109/tcbb.2007.1055DOI Listing
January 2008