Jinhyuk Lee

Jinhyuk Lee

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Inhibitory effect of α-ketoglutaric acid on α-glucosidase: integrating molecular dynamics simulation and inhibition kinetics.

J Biomol Struct Dyn 2019 Sep 9:1-8. Epub 2019 Sep 9.

College of Biological and Environmental Sciences, Zhejiang Wanli University , Ningbo , People's Republic of China.

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http://dx.doi.org/10.1080/07391102.2019.1659858DOI Listing
September 2019

BioBERT: a pre-trained biomedical language representation model for biomedical text mining.

Bioinformatics 2019 Sep 10. Epub 2019 Sep 10.

Department of Computer Science and Engineering, Korea University, Seoul, Korea.

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http://dx.doi.org/10.1093/bioinformatics/btz682DOI Listing
September 2019

Isolation and Characterization of the Stress-Tolerant YHJ1 and Evaluation of Its Xylose Reductase for Xylitol Production From Acid Pre-treatment Wastewater.

Front Bioeng Biotechnol 2019 2;7:138. Epub 2019 Jul 2.

Synthetic Biology and Bioengineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, South Korea.

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http://dx.doi.org/10.3389/fbioe.2019.00138DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6626919PMC
July 2019

ReSimNet: Drug Response Similarity Prediction using Siamese Neural Networks.

Bioinformatics 2019 May 22. Epub 2019 May 22.

Department of Computer Science and Engineering, Korea University, Seoul, Korea.

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https://academic.oup.com/bioinformatics/advance-article/doi/
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http://dx.doi.org/10.1093/bioinformatics/btz411DOI Listing
May 2019

CollaboNet: collaboration of deep neural networks for biomedical named entity recognition.

BMC Bioinformatics 2019 May 29;20(Suppl 10):249. Epub 2019 May 29.

Department of Computer Science and Engineering, Korea University, Seoul, 02841, Republic of Korea.

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http://dx.doi.org/10.1186/s12859-019-2813-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6538547PMC
May 2019

Inhibitory effect of phloroglucinol on α-glucosidase: Kinetics and molecular dynamics simulation integration study.

Int J Biol Macromol 2019 Mar 29;124:771-779. Epub 2018 Nov 29.

College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo 315100, PR China; Department of Dermatology, Sungkyunkwan University School of Medicine, Samsung Medical Center, Seoul 135-710, Republic of Korea; Skin Diseases Research Center, Yangtze Delta Region Institute of Tsinghua University, 705 Yatai Road, Jiaxing 314006, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.ijbiomac.2018.11.268DOI Listing
March 2019

Differential effects, on oncogenic pathway signalling, by derivatives of the HNF4 α inhibitor BI6015.

Br J Cancer 2019 Mar 22;120(5):488-498. Epub 2019 Feb 22.

College of Pharmacy, Yonsei Institute of Pharmaceutical Sciences, Yonsei University, Incheon, 21983, Korea.

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http://dx.doi.org/10.1038/s41416-018-0374-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6461897PMC
March 2019

Dual BACE1 and Cholinesterase Inhibitory Effects of Phlorotannins from -An In Vitro and in Silico Study.

Mar Drugs 2019 Feb 1;17(2). Epub 2019 Feb 1.

Department of Food Science and Nutrition, College of Health Sciences, Dong-A University, 37, Nakdong-daero 550 beon-gil, Saha-gu, Busan 49315, Korea.

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http://dx.doi.org/10.3390/md17020091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6410325PMC
February 2019

The inhibitory effect of pyrogallol on tyrosinase activity and structure: Integration study of inhibition kinetics with molecular dynamics simulation.

Int J Biol Macromol 2019 Jan 13;121:463-471. Epub 2018 Oct 13.

College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo 315100, PR China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S01418130183186
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http://dx.doi.org/10.1016/j.ijbiomac.2018.10.046DOI Listing
January 2019

Identification of a rare homozygous c.790C>T variation in the TFB2M gene in Korean patients with autism spectrum disorder.

Biochem Biophys Res Commun 2018 12 7;507(1-4):148-154. Epub 2018 Nov 7.

Department of Medical Genetics, Ajou University School of Medicine, Suwon, 16499, Republic of Korea; Department of Physical Medicine and Rehabilitation, Ajou University School of Medicine, Suwon, 16499, Republic of Korea. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S0006291X183238
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http://dx.doi.org/10.1016/j.bbrc.2018.10.194DOI Listing
December 2018

Peroxisome Proliferator-Activated Receptor α Agonist and Its Target Nanog Cooperate to Induce Pluripotency.

J Clin Med 2018 Nov 27;7(12). Epub 2018 Nov 27.

Stem Cell Research Laboratory, Immunotherapy Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Korea.

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http://dx.doi.org/10.3390/jcm7120488DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6306698PMC
November 2018

Fisetin inhibits TNF-α/NF-κB-induced IL-8 expression by targeting PKCδ in human airway epithelial cells.

Cytokine 2018 08 1;108:247-254. Epub 2018 Feb 1.

Natural Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 30 Yeongudanji-ro, Ochang, Cheongju, Chungbuk 28116, Republic of Korea; Immunotherapy Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong-gu, Daejeon 34141, Republic of Korea. Electronic address:

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http://dx.doi.org/10.1016/j.cyto.2018.01.004DOI Listing
August 2018

Development of Bacillus methanolicus methanol dehydrogenase with improved formaldehyde reduction activity.

Sci Rep 2018 08 20;8(1):12483. Epub 2018 Aug 20.

Cell Factory Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, South Korea.

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http://www.nature.com/articles/s41598-018-31001-8
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http://dx.doi.org/10.1038/s41598-018-31001-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6102214PMC
August 2018

Inhibitory effect of raspberry ketone on α-glucosidase: Docking simulation integrating inhibition kinetics.

Int J Biol Macromol 2018 Jul 29;113:212-218. Epub 2018 Mar 29.

College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo 315100, PR China; Zhejiang Provincial Key Laboratory of Applied Enzymology, Yangtze Delta Region Institute of Tsinghua University, Jiaxing 314006, PR China; Department of Dermatology, Sungkyunkwan University School of Medicine, Samsung Medical Center, Seoul 135-710, Republic of Korea. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S01418130183066
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http://dx.doi.org/10.1016/j.ijbiomac.2018.02.124DOI Listing
July 2018

Inhibitory effect of pyrogallol on α-glucosidase: Integrating docking simulations with inhibition kinetics.

Int J Biol Macromol 2018 Jun 6;112:686-693. Epub 2018 Feb 6.

Department of Dermatology, Sungkyunkwan University School of Medicine, Samsung Medical Center, Seoul 135-710, Republic of Korea; Zhejiang Provincial Key Laboratory of Applied Enzymology, Yangtze Delta Region Institute of Tsinghua University, Jiaxing 314006, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.ijbiomac.2018.02.026DOI Listing
June 2018

In Silico Docking and In Vitro Approaches towards BACE1 and Cholinesterases Inhibitory Effect of Citrus Flavanones.

Molecules 2018 Jun 22;23(7). Epub 2018 Jun 22.

Department of Food Science and Nutrition, Dong-A University, 37, Nakdong-daero 550 beon-gil, Saha-gu, Busan 49315, Korea.

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http://www.mdpi.com/1420-3049/23/7/1509
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http://dx.doi.org/10.3390/molecules23071509DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6100189PMC
June 2018

BACE1 Inhibition by Genistein: Biological Evaluation, Kinetic Analysis, and Molecular Docking Simulation.

J Med Food 2018 Apr 14;21(4):416-420. Epub 2018 Feb 14.

1 Department of Food Science and Nutrition, Dong-A University , Busan, Korea.

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http://www.liebertpub.com/doi/10.1089/jmf.2017.4068
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http://dx.doi.org/10.1089/jmf.2017.4068DOI Listing
April 2018

Reversible Mn/Mn double redox in lithium-excess cathode materials.

Nature 2018 04 11;556(7700):185-190. Epub 2018 Apr 11.

Department of Materials Science and Engineering, University of California, Berkeley, CA, USA.

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http://dx.doi.org/10.1038/s41586-018-0015-4DOI Listing
April 2018

Molecular dynamics simulation integrating the inhibition kinetics of hydroxysafflor yellow A on α-glucosidase.

J Biomol Struct Dyn 2018 03 15;36(4):830-840. Epub 2017 Mar 15.

f School of Preclinical Medicine , Beijing University of Chinese Medicine , Beijing 100029 , P.R. China.

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http://dx.doi.org/10.1080/07391102.2017.1300544DOI Listing
March 2018

Systematic Inspection of the Clinical Relevance of TP53 Missense Mutations in Gastric Cancer.

IEEE/ACM Trans Comput Biol Bioinform 2019 Sep-Oct;16(5):1693-1701. Epub 2018 Mar 8.

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http://dx.doi.org/10.1109/TCBB.2018.2814049DOI Listing
March 2018

Evolution of enzymes with new specificity by high-throughput screening using DmpR-based genetic circuits and multiple flow cytometry rounds.

Sci Rep 2018 02 8;8(1):2659. Epub 2018 Feb 8.

Synthetic Biology and Bioengineering Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 305-806, Korea.

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http://www.nature.com/articles/s41598-018-20943-8
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http://dx.doi.org/10.1038/s41598-018-20943-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5805759PMC
February 2018

Piscroside C inhibits TNF-α/NF-κB pathway by the suppression of PKCδ activity for TNF-RSC formation in human airway epithelial cells.

Phytomedicine 2018 Feb 31;40:148-157. Epub 2018 Jan 31.

Natural Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology, 30 Yeongudanji-ro, Ochang-eup, Cheongwon-gu, Cheongju-si, Cheongju-si 28116, Republic of Korea. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S09447113183001
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http://dx.doi.org/10.1016/j.phymed.2018.01.012DOI Listing
February 2018

The effect of alpha-ketoglutaric acid on tyrosinase activity and conformation: Kinetics and molecular dynamics simulation study.

Int J Biol Macromol 2017 Dec 7;105(Pt 3):1654-1662. Epub 2016 Dec 7.

Zhejiang Provincial Key Laboratory of Applied Enzymology, Yangtze Delta Region Institute of Tsinghua University, Jiaxing, 314006, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.ijbiomac.2016.12.015DOI Listing
December 2017

Inhibition of tyrosinase by fumaric acid: Integration of inhibition kinetics with computational docking simulations.

Int J Biol Macromol 2017 Dec 7;105(Pt 3):1663-1669. Epub 2016 Dec 7.

Zhejiang Provincial Key Laboratory of Applied Enzymology, Yangtze Delta Region Institute of Tsinghua University, Jiaxing 314006, PR China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S01418130163278
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http://dx.doi.org/10.1016/j.ijbiomac.2016.12.013DOI Listing
December 2017

Hydrogen peroxide (HO) irreversibly inactivates creatine kinase from Pelodiscus sinensis by targeting the active site cysteine.

Int J Biol Macromol 2017 Dec 7;105(Pt 3):1595-1601. Epub 2017 Mar 7.

College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo 315100, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.ijbiomac.2017.03.025DOI Listing
December 2017

Towards Binding Mechanism of Cu2+ on Creatine Kinase from Pelodiscus sinensis: Molecular Dynamics Simulation Integrating Inhibition Kinetics Study.

Protein Pept Lett 2017 ;24(6):534-544

College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo 315100, China.

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http://dx.doi.org/10.2174/0929866524666170227122706DOI Listing
October 2017

Computational prediction integrating the inhibition kinetics of gallotannin on α-glucosidase.

Int J Biol Macromol 2017 Oct 21;103:829-838. Epub 2017 May 21.

Department of Dermatology, Sungkyunkwan University School of Medicine, Samsung Medical Center, Seoul 135-710, Korea. Electronic address:

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http://dx.doi.org/10.1016/j.ijbiomac.2017.05.106DOI Listing
October 2017

Mitigating oxygen loss to improve the cycling performance of high capacity cation-disordered cathode materials.

Nat Commun 2017 10 17;8(1):981. Epub 2017 Oct 17.

Department of Materials Science and Engineering, University of California, Berkeley, CA, 94720, USA.

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http://dx.doi.org/10.1038/s41467-017-01115-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5645360PMC
October 2017

Polymethoxyflavones: Novel β-Secretase (BACE1) Inhibitors from Citrus Peels.

Nutrients 2017 Sep 4;9(9). Epub 2017 Sep 4.

Department of Food Science and Nutrition, Dong-A University, 37, Nakdong-daero 550 beon-gil, Saha-gu, Busan 49315, Korea.

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http://dx.doi.org/10.3390/nu9090973DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5622733PMC
September 2017

The effect of oxaloacetic acid on tyrosinase activity and structure: Integration of inhibition kinetics with docking simulation.

Int J Biol Macromol 2017 Aug 16;101:59-66. Epub 2017 Mar 16.

Zhejiang Provincial Key Laboratory of Applied Enzymology, Yangtze Delta Region, Institute of Tsinghua University, Jiaxing 314006, PR China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S01418130163292
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http://dx.doi.org/10.1016/j.ijbiomac.2017.03.073DOI Listing
August 2017

Inhibitory effect of hesperetin on α-glucosidase: Molecular dynamics simulation integrating inhibition kinetics.

Int J Biol Macromol 2017 Aug 18;101:32-39. Epub 2017 Mar 18.

Zhejiang Provincial Key Laboratory of Applied Enzymology, Yangtze Delta Region Institute of Tsinghua University, Jiaxing 314006, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.ijbiomac.2017.03.072DOI Listing
August 2017

Anti-Obesity Effects of Spiramycin In Vitro and In Vivo.

PLoS One 2016 11;11(7):e0158632. Epub 2016 Jul 11.

Natural Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology, 30 Yeongudanji-ro, Ochang, Cheongju, Chungbuk, 28116, Korea.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0158632PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4939947PMC
July 2017

Effect of Cd on tyrosinase: Integration of inhibition kinetics with computational simulation.

Int J Biol Macromol 2017 Jan 11;94(Pt B):836-844. Epub 2016 Sep 11.

Zhejiang Provincial Key Laboratory of Applied Enzymology, Yangtze Delta Region Institute of Tsinghua University, Jiaxing 314006, PR China; College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo 315100, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.ijbiomac.2016.09.001DOI Listing
January 2017

Clinical Relevance and Molecular Phenotypes in Gastric Cancer, of TP53 Mutations and Gene Expressions, in Combination With Other Gene Mutations.

Sci Rep 2016 10 6;6:34822. Epub 2016 Oct 6.

New Experimental Therapeutics Branch, National Cancer Center, Goyang-si Gyeonggi-do, 10408, Korea.

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http://dx.doi.org/10.1038/srep34822DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5052597PMC
October 2016

The Identification of Biochanin A as a Potent and Selective β-Site App-Cleaving Enzyme 1 (Bace1) Inhibitor.

Nutrients 2016 Oct 14;8(10). Epub 2016 Oct 14.

Department of Food Science and Nutrition, Dong-A University, Busan 604-714, Korea.

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http://dx.doi.org/10.3390/nu8100637DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5084024PMC
October 2016

Effects of cadmium on the cuttlefish Sepia pharaonis' arginine kinase: unfolding kinetics integrated with computational simulations.

J Biomol Struct Dyn 2016 Aug 19;34(8):1763-77. Epub 2015 Oct 19.

a School of Marine Sciences , Ningbo University , Ningbo 315211 , P.R. China.

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http://dx.doi.org/10.1080/07391102.2015.1091747DOI Listing
August 2016

Integration of Inhibition Kinetics and Molecular Dynamics Simulations: A Urea-Mediated Folding Study on Acetaldehyde Dehydrogenase 1.

Appl Biochem Biotechnol 2016 Jul 21;179(6):1101-14. Epub 2016 Mar 21.

Zhejiang Provincial Key Laboratory of Applied Enzymology, Yangtze Delta Region Institute of Tsinghua University, Jiaxing, 314006, People's Republic of China.

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http://dx.doi.org/10.1007/s12010-016-2052-5DOI Listing
July 2016

The structural and chemical origin of the oxygen redox activity in layered and cation-disordered Li-excess cathode materials.

Nat Chem 2016 07 30;8(7):692-7. Epub 2016 May 30.

Department of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.

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http://dx.doi.org/10.1038/nchem.2524DOI Listing
July 2016

Effect of Cadmium Ion on alpha-Glucosidase: An Inhibition Kinetics and Molecular Dynamics Simulation Integration Study.

Protein J 2016 06;35(3):218-24

Department of Epidemiology, School of Public Health and Tropical Medicine, Guangdong Provincial Key Laboratory of Tropical Disease Research, Southern Medical University, Guangzhou, 510515, People's Republic of China.

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http://dx.doi.org/10.1007/s10930-016-9664-zDOI Listing
June 2016

Network Comparison of Inflammation in Colorectal Cancer and Alzheimer's Disease.

Biomed Res Int 2015 26;2015:205247. Epub 2015 Jul 26.

New Experimental Therapeutics Branch, National Cancer Center, Goyang-si, Gyeonggi-do 410-769, Republic of Korea.

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http://dx.doi.org/10.1155/2015/205247DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4529906PMC
May 2016

Designing an Antibody-Based Chaperoning System through Programming the Binding and Release of the Folding Intermediate.

ACS Chem Biol 2016 Apr 25;11(4):1090-7. Epub 2016 Mar 25.

Department of Biochemistry and Molecular Biology, College of Life Sciences, Beijing Normal University , Gene engineering and Biotechnology Beijing Key Laboratory, The Key Laboratory of Cell Proliferation and Regulation Biology of Ministry of Education, Beijing 100875, P. R. China.

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http://dx.doi.org/10.1021/acschembio.6b00191DOI Listing
April 2016

NMRe: a web server for NMR protein structure refinement with high-quality structure validation scores.

Bioinformatics 2016 Feb 26;32(4):611-3. Epub 2015 Oct 26.

Korean Bioinformation Center (KOBIC), Korea Research Institute of Bioscience and Biotechnology, Yuseong-gu, Daejeon 305-806, the Republic of Korea, Department of Nanobiotechnology and Bioinformatics, University of Science and Technology, Yuseong-Gu, Daejeon 305-350, the Republic of Korea and.

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http://dx.doi.org/10.1093/bioinformatics/btv595DOI Listing
February 2016

Effect of Cd2+ on muscle type of creatine kinase: Inhibition kinetics integrating computational simulations.

Int J Biol Macromol 2016 Feb 28;83:233-41. Epub 2015 Nov 28.

College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, 315100, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.ijbiomac.2015.11.077DOI Listing
February 2016

Verproside inhibits TNF-α-induced MUC5AC expression through suppression of the TNF-α/NF-κB pathway in human airway epithelial cells.

Cytokine 2016 Jan 28;77:168-75. Epub 2015 Aug 28.

Natural Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology, 30 Yeongudanji-ro, Ochang-eup, Cheongwon-gu, Cheongju-si, Chungbuk 363-883, Republic of Korea. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10434666153005
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http://dx.doi.org/10.1016/j.cyto.2015.08.262DOI Listing
January 2016

Protein NMR structures refined without NOE data.

PLoS One 2014 3;9(10):e108888. Epub 2014 Oct 3.

Korean Bioinformation Center (KOBIC), Korea Research Institute of Bioscience and Biotechnology, Daejeon, The Republic of Korea; Department of Bioinformatics, University of Science and Technology, Daejeon, The Republic of Korea.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0108888PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4184813PMC
December 2015

Semi-Empirical Structure Determination of Escherichia coli Hsp33 and Identification of Dynamic Regulatory Elements for the Activation Process.

J Mol Biol 2015 Dec 8;427(24):3850-61. Epub 2015 Oct 8.

Department of Biotechnology, Research Institute (RIBHS) and College of Biomedical and Health Science, Konkuk University, Chungju, Chungbuk 27478, Republic of Korea. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00222836150055
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http://dx.doi.org/10.1016/j.jmb.2015.09.029DOI Listing
December 2015

Protein structure determination by conformational space annealing using NMR geometric restraints.

Proteins 2015 Dec 17;83(12):2251-62. Epub 2015 Nov 17.

Center for in Silico Protein Science, Korea Institute for Advanced Study, Seoul, 130-722, Korea.

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http://dx.doi.org/10.1002/prot.24941DOI Listing
December 2015

Mg2+ effect on argonaute and RNA duplex by molecular dynamics and bioinformatics implications.

PLoS One 2014 17;9(10):e109745. Epub 2014 Oct 17.

Korean Bioinformation Center (KOBIC), Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Korea; Department of Bioinformatics, University of Sciences and Technology, Daejeon, Korea.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0109745PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4201462PMC
July 2015

The Inhibitory Effects of Cu(2+) on Exopalaemon carinicauda Arginine Kinase via Inhibition Kinetics and Molecular Dynamics Simulations.

Appl Biochem Biotechnol 2015 Jun 3;176(4):1217-36. Epub 2015 May 3.

College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, 315100, People's Republic of China.

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http://dx.doi.org/10.1007/s12010-015-1641-zDOI Listing
June 2015

Effects of L-malic acid on alpha-glucosidase: inhibition kinetics and computational molecular dynamics simulations.

Appl Biochem Biotechnol 2015 Feb 5;175(4):2232-45. Epub 2014 Dec 5.

College of Biology and Science, Sichuan Agriculture University, Chengdu, 611130, People's Republic of China,

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http://link.springer.com/content/pdf/10.1007%2Fs12010-014-14
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http://link.springer.com/10.1007/s12010-014-1429-6
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http://dx.doi.org/10.1007/s12010-014-1429-6DOI Listing
February 2015

A pathway-based approach for identifying biomarkers of tumor progression to trastuzumab-resistant breast cancer.

Cancer Lett 2015 Jan 4;356(2 Pt B):880-90. Epub 2014 Nov 4.

New Experimental Therapeutics Branch, National Cancer Center, Goyang-si, Gyeonggi-do 410-769, Republic of Korea. Electronic address:

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http://dx.doi.org/10.1016/j.canlet.2014.10.038DOI Listing
January 2015

Designing new lithium-excess cathode materials from percolation theory: nanohighways in Li(x)Ni(2-4x/3)Sb(x/3)O2.

Nano Lett 2015 Jan 22;15(1):596-602. Epub 2014 Dec 22.

Department of Materials Science and Engineering, Massachusetts Institute of Technology , Cambridge, Massachusetts 02139, United States.

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http://dx.doi.org/10.1021/nl5040754DOI Listing
January 2015

A folding study of Antarctic krill (Euphausia superba) alkaline phosphatase using denaturants.

Int J Biol Macromol 2014 Sep 10;70:266-74. Epub 2014 Jul 10.

College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo 315100, PR China; Zhejiang Provincial Key Laboratory of Applied Enzymology, Yangtze Delta Region Institute of Tsinghua University, Jiaxing 314006, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.ijbiomac.2014.07.001DOI Listing
September 2014

Effect of Ca(2+) on the activity and structure of α-glucosidase: inhibition kinetics and molecular dynamics simulations.

J Biosci Bioeng 2014 Jun 20;117(6):696-705. Epub 2014 Jan 20.

School of Preclinical Medicine, Beijing University of Chinese Medicine, 11 Beisanhuandong Road, Beijing 100029, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.jbiosc.2013.12.003DOI Listing
June 2014

Oleic acid and linoleic acid from Tenebrio molitor larvae inhibit BACE1 activity in vitro: molecular docking studies.

J Med Food 2014 Feb;17(2):284-9

1 Department of Food Science and Nutrition, Dong-A University , Saha-gu, Busan, Korea.

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http://dx.doi.org/10.1089/jmf.2013.2968DOI Listing
February 2014

Unlocking the potential of cation-disordered oxides for rechargeable lithium batteries.

Science 2014 Jan 9;343(6170):519-22. Epub 2014 Jan 9.

Department of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.

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http://dx.doi.org/10.1126/science.1246432DOI Listing
January 2014

The effect of Zn(2+) on Pelodiscus sinensis creatine kinase: unfolding and aggregation studies.

J Biomol Struct Dyn 2013 13;31(6):572-90. Epub 2012 Aug 13.

College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, 315100, PR China.

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http://dx.doi.org/10.1080/07391102.2012.706074DOI Listing
November 2013

Effects of osmolytes on Pelodiscus sinensis creatine kinase: a study on thermal denaturation and aggregation.

Int J Biol Macromol 2013 Sep 19;60:277-87. Epub 2013 Jun 19.

College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo 315100, PR China.

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http://dx.doi.org/10.1016/j.ijbiomac.2013.06.015DOI Listing
September 2013

Statistical torsion angle potential energy functions for protein structure modeling: a bicubic interpolation approach.

Proteins 2013 Jul 10;81(7):1156-65. Epub 2013 Apr 10.

Department of Chemistry, Seoul National University, Seoul 151-747, Republic of Korea.

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http://dx.doi.org/10.1002/prot.24265DOI Listing
July 2013

The effect of validamycin A on tyrosinase: inhibition kinetics and computational simulation.

Int J Biol Macromol 2013 Apr 4;55:15-23. Epub 2013 Jan 4.

College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo 315100, PR China.

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http://dx.doi.org/10.1016/j.ijbiomac.2012.12.040DOI Listing
April 2013

The Effect of D-(-)-arabinose on Tyrosinase: An Integrated Study Using Computational Simulation and Inhibition Kinetics.

Enzyme Res 2012 23;2012:731427. Epub 2012 Dec 23.

Zhejiang Provincial Key Laboratory of Applied Enzymology, Yangtze Delta Region Institute of Tsinghua University, Jiaxing 314006, China.

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http://dx.doi.org/10.1155/2012/731427DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3540692PMC
February 2013

The effect of fucoidan on tyrosinase: computational molecular dynamics integrating inhibition kinetics.

J Biomol Struct Dyn 2012 12;30(4):460-73. Epub 2012 Jun 12.

College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, 315100, P.R. China.

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http://dx.doi.org/10.1080/07391102.2012.682211DOI Listing
December 2012

Effects of osmolytes on human brain-type creatine kinase folding in dilute solutions and crowding systems.

Int J Biol Macromol 2012 Dec 3;51(5):845-58. Epub 2012 Aug 3.

School of Life Science and Biotechnology, Dalian University of Technology, Dalian 116024, PR China.

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http://dx.doi.org/10.1016/j.ijbiomac.2012.07.026DOI Listing
December 2012

A simplified homology-model builder toward highly protein-like structures: an inspection of restraining potentials.

J Comput Chem 2012 Sep 30;33(24):1927-35. Epub 2012 May 30.

Department of Chemistry, Seoul National University, Seoul 151-747, Republic of Korea.

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http://dx.doi.org/10.1002/jcc.23024DOI Listing
September 2012

Computational prediction of protein-protein interactions of human tyrosinase.

Enzyme Res 2012 26;2012:192867. Epub 2012 Mar 26.

College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo 315100, China.

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http://dx.doi.org/10.1155/2012/192867DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3335181PMC
August 2012

STAP Refinement of the NMR database: a database of 2405 refined solution NMR structures.

Nucleic Acids Res 2012 Jan 18;40(Database issue):D525-30. Epub 2011 Nov 18.

Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 125 Gwahak-ro Yuseong-Gu, Daejeon 305-806, The Republic of Korea.

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http://dx.doi.org/10.1093/nar/gkr1021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245188PMC
January 2012

De novo protein structure prediction by dynamic fragment assembly and conformational space annealing.

Proteins 2011 Aug 20;79(8):2403-17. Epub 2011 May 20.

Department of Chemistry, Seoul National University, Seoul, Korea.

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http://dx.doi.org/10.1002/prot.23059DOI Listing
August 2011

Novel free energy calculations to explore mechanisms and energetics of membrane protein structure and function.

J Comput Chem 2009 Aug;30(11):1622-33

Department of Molecular Biosciences and Center for Bioinformatics, The University of Kansas, 2030 Becker Drive, Lawrence, Kansas 66047, USA.

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http://dx.doi.org/10.1002/jcc.21320DOI Listing
August 2009

Comparative molecular dynamics simulation studies of protegrin-1 monomer and dimer in two different lipid bilayers.

Biophys J 2009 Aug;97(3):787-95

Department of Molecular Biosciences and Center for Bioinformatics, The University of Kansas, Lawrence, Kansas, USA.

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http://dx.doi.org/10.1016/j.bpj.2009.05.029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2718173PMC
August 2009

Molecular dynamics studies on structure and dynamics of phospholamban monomer and pentamer in membranes.

Proteins 2009 Jul;76(1):86-98

Department of Molecular Biosciences and Center for Bioinformatics, The University of Kansas, Lawrence, Kansas 66047, USA.

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http://dx.doi.org/10.1002/prot.22322DOI Listing
July 2009

Beta-hairpin restraint potentials for calculations of potentials of mean force as a function of beta-hairpin tilt, rotation, and distance.

J Comput Chem 2009 Jun;30(8):1334-43

Department of Molecular Biosciences and Center for Bioinformatics, The University of Kansas, 2030 Becker Drive, Lawrence, Kansas 66047, USA.

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http://doi.wiley.com/10.1002/jcc.21154
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http://dx.doi.org/10.1002/jcc.21154DOI Listing
June 2009

Application of solid-state NMR restraint potentials in membrane protein modeling.

J Magn Reson 2008 Jul 18;193(1):68-76. Epub 2008 Apr 18.

Department of Molecular Biosciences and Center for Bioinformatics, The University of Kansas, 2030 Becker Drive, Lawrence, KS 66047, USA.

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http://dx.doi.org/10.1016/j.jmr.2008.04.023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2546517PMC
July 2008

Role of hydrogen bonding and helix-lipid interactions in transmembrane helix association.

J Am Chem Soc 2008 May 19;130(20):6456-62. Epub 2008 Apr 19.

Department of Molecular Biosciences and Center for Bioinformatics, The University of Kansas, 2030 Becker Drive, Lawrence, Kansas 66047, USA.

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http://dx.doi.org/10.1021/ja711239hDOI Listing
May 2008

Transmembrane helix tilting: insights from calculating the potential of mean force.

Phys Rev Lett 2008 Jan 8;100(1):018103. Epub 2008 Jan 8.

Department of Molecular Biosciences and Center for Bioinformatics, The University of Kansas, 2030 Becker Drive, Lawrence, KS 66047, USA.

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http://dx.doi.org/10.1103/PhysRevLett.100.018103DOI Listing
January 2008

Conformational change of the methionine 20 loop of Escherichia coli dihydrofolate reductase modulates pKa of the bound dihydrofolate.

Protein Sci 2007 Jun 1;16(6):1087-100. Epub 2007 May 1.

The Scripps Research Institute, Department of Molecular Biology, TPC6, La Jolla, California 92037, USA.

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http://dx.doi.org/10.1110/ps.062724307DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2206655PMC
June 2007

Implementation and application of helix-helix distance and crossing angle restraint potentials.

J Comput Chem 2007 Feb;28(3):669-80

Department of Molecular Biosciences, Center for Bioinformatics, The University of Kansas, 2030 Becker Drive, Lawrence, Kansas 66047, USA.

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http://dx.doi.org/10.1002/jcc.20614DOI Listing
February 2007