Jingyuan Fu

Jingyuan Fu

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Jingyuan Fu

Publications by authors named "Jingyuan Fu"

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Global phylogeography and ancient evolution of the widespread human gut virus crAssphage.

Authors:
Robert A Edwards Alejandro A Vega Holly M Norman Maria Ohaeri Kyle Levi Elizabeth A Dinsdale Ondrej Cinek Ramy K Aziz Katelyn McNair Jeremy J Barr Kyle Bibby Stan J J Brouns Adrian Cazares Patrick A de Jonge Christelle Desnues Samuel L Díaz Muñoz Peter C Fineran Alexander Kurilshikov Rob Lavigne Karla Mazankova David T McCarthy Franklin L Nobrega Alejandro Reyes Muñoz German Tapia Nicole Trefault Alexander V Tyakht Pablo Vinuesa Jeroen Wagemans Alexandra Zhernakova Frank M Aarestrup Gunduz Ahmadov Abeer Alassaf Josefa Anton Abigail Asangba Emma K Billings Vito Adrian Cantu Jane M Carlton Daniel Cazares Gyu-Sung Cho Tess Condeff Pilar Cortés Mike Cranfield Daniel A Cuevas Rodrigo De la Iglesia Przemyslaw Decewicz Michael P Doane Nathaniel J Dominy Lukasz Dziewit Bashir Mukhtar Elwasila A Murat Eren Charles Franz Jingyuan Fu Cristina Garcia-Aljaro Elodie Ghedin Kristen M Gulino John M Haggerty Steven R Head Rene S Hendriksen Colin Hill Heikki Hyöty Elena N Ilina Mitchell T Irwin Thomas C Jeffries Juan Jofre Randall E Junge Scott T Kelley Mohammadali Khan Mirzaei Martin Kowalewski Deepak Kumaresan Steven R Leigh David Lipson Eugenia S Lisitsyna Montserrat Llagostera Julia M Maritz Linsey C Marr Angela McCann Shahar Molshanski-Mor Silvia Monteiro Benjamin Moreira-Grez Megan Morris Lawrence Mugisha Maite Muniesa Horst Neve Nam-Phuong Nguyen Olivia D Nigro Anders S Nilsson Taylor O'Connell Rasha Odeh Andrew Oliver Mariana Piuri Aaron J Prussin Ii Udi Qimron Zhe-Xue Quan Petra Rainetova Adán Ramírez-Rojas Raul Raya Kim Reasor Gillian A O Rice Alessandro Rossi Ricardo Santos John Shimashita Elyse N Stachler Lars C Stene Ronan Strain Rebecca Stumpf Pedro J Torres Alan Twaddle MaryAnn Ugochi Ibekwe Nicolás Villagra Stephen Wandro Bryan White Andy Whiteley Katrine L Whiteson Cisca Wijmenga Maria M Zambrano Henrike Zschach Bas E Dutilh

Nat Microbiol 2019 Jul 8. Epub 2019 Jul 8.

Theoretical Biology and Bioinformatics, Science4Life, Utrecht University, Utrecht, The Netherlands.

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http://dx.doi.org/10.1038/s41564-019-0494-6DOI Listing
July 2019

Structural variation in the gut microbiome associates with host health.

Nature 2019 04 27;568(7750):43-48. Epub 2019 Mar 27.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.

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http://www.nature.com/articles/s41586-019-1065-y
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http://dx.doi.org/10.1038/s41586-019-1065-yDOI Listing
April 2019

Large-scale plasma metabolome analysis reveals alterations in HDL metabolism in migraine.

Neurology 2019 Apr 3;92(16):e1899-e1911. Epub 2019 Apr 3.

From the Departments of Neurology (G.L.J.O., J.A.P., D.A.K., R.Z., I.d.B., M.D.F., G.M.T., A.M.J.M.v.d.M.), Human Genetics (A.D., L.S.V., P.A.C.'tH., A.M.J.M.v.d.M.), Molecular Epidemiology (M.B., P.E.S.), Radiology (D.A.K.), and Medical Statistics (J.J.G.), Leiden University Medical Centre; Department of Biological Psychology (L.L., R.P., D.I.B.), Vrije Universiteit Amsterdam; Amsterdam Public Health Institute (L.L.); Amsterdam Neuroscience and Amsterdam Public Health (M.B., C.S.T., Y.M., D.I.B., B.W.P.); Department of Psychiatry (M.B., C.S.T., Y.M., B.W.P.), VU University Medical Centre/GGZ inGeest, Amsterdam; Departments of Epidemiology (A.D., J.L., K.-x.W., N.A., M.A.I., C.M.v.D.) and Neurology (M.A.I.), Erasmus Medical Centre, Rotterdam; Departments of Genetics (J.F., L.F., C.W.) and Pediatrics (J.F.), University Medical Centre Groningen; Department of Internal Medicine (C.J.H.v.d.K., F.H.M.V., M.M.J.v.G., M.T.S., C.D.A.S.) and Heart and Vascular Center (M.T.S.), Maastricht University Medical Centre; CARIM School for Cardiovascular Diseases (C.J.H.v.d.K., M.M.J.v.G., I.C.W.A., M.T.S., P.C.D., C.D.A.S.), Department of Epidemiology (I.C.W.A.), MaCSBio Maastricht Centre for Systems Biology (I.C.W.A.), and Department of Epidemiology (P.C.D.), Maastricht University; Department of Radiology (M.A.I.), Erasmus MC University Medical Centre, Rotterdam; Leiden Academic Centre in Drug Research, Faculty Science (C.M.v.D.), Leiden University; and Centre for Molecular and Biomolecular Informatics (P.A.C.'tH.), Radboud University Medical Centre Nijmegen, Radboud Institute for Molecular Life Sciences, Nijmegen, the Netherlands.

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http://dx.doi.org/10.1212/WNL.0000000000007313DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6550500PMC
April 2019

Anti-inflammatory Gut Microbial Pathways Are Decreased During Crohn's Disease Exacerbations.

J Crohns Colitis 2019 Apr 10. Epub 2019 Apr 10.

University Medical Center Groningen, Department of Gastroenterology and Hepatology, Groningen, The Netherlands.

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http://dx.doi.org/10.1093/ecco-jcc/jjz077DOI Listing
April 2019

Shared gut, but distinct oral microbiota composition in primary Sjögren's syndrome and systemic lupus erythematosus.

J Autoimmun 2019 Feb 9;97:77-87. Epub 2018 Nov 9.

Department of Rheumatology & Clinical Immunology, University of Groningen, University Medical Center Groningen, PO Box 30.001, 9700 RB, Groningen, The Netherlands.

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http://dx.doi.org/10.1016/j.jaut.2018.10.009DOI Listing
February 2019

Lactate Degradation Pattern Shifts in Rumen Acidosis Models.

Front Microbiol 2019 7;10:162. Epub 2019 Feb 7.

Laboratory of Metabolic Manipulation of Herbivorous Animal Nutrition, College of Animal Science and Technology, Yangzhou University, Yangzhou, China.

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http://dx.doi.org/10.3389/fmicb.2019.00162DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6374331PMC
February 2019

Dysbiosis of the buccal mucosa microbiome in primary Sjögren's syndrome patients.

Rheumatology (Oxford) 2018 12;57(12):2225-2234

Department of Oral and Maxillofacial Surgery, University Medical Center Groningen, Groningen, The Netherlands.

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http://dx.doi.org/10.1093/rheumatology/key215DOI Listing
December 2018

A system biology perspective on environment-host-microbe interactions.

Hum Mol Genet 2018 08;27(R2):R187-R194

Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, RB, The Netherlands.

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http://dx.doi.org/10.1093/hmg/ddy137DOI Listing
August 2018

Pharmacomicrobiomics: a novel route towards personalized medicine?

Protein Cell 2018 05 28;9(5):432-445. Epub 2018 Apr 28.

Departments of Genetics, University Medical Center Groningen, PO Box 30001, 9700 RB, Groningen, The Netherlands.

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http://dx.doi.org/10.1007/s13238-018-0547-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5960471PMC
May 2018

Host Genetics and Gut Microbiome: Challenges and Perspectives.

Trends Immunol 2017 09 29;38(9):633-647. Epub 2017 Jun 29.

University of Groningen, University Medical Center Groningen, Department of Genetics, P.O. Box 30001, 9700 RB Groningen, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.it.2017.06.003DOI Listing
September 2017

The influence of proton pump inhibitors and other commonly used medication on the gut microbiota.

Gut Microbes 2017 07 24;8(4):351-358. Epub 2017 Jan 24.

a University of Groningen and University Medical Center Groningen , Department of Gastroenterology and Hepatology , Groningen , the Netherlands.

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http://dx.doi.org/10.1080/19490976.2017.1284732DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5570416PMC
July 2017

Inter-Tissue Gene Co-Expression Networks between Metabolically Healthy and Unhealthy Obese Individuals.

PLoS One 2016 1;11(12):e0167519. Epub 2016 Dec 1.

Department of Large Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0167519PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5132173PMC
June 2017

Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity.

Cell 2016 11;167(4):1125-1136.e8

The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Center for Computational and Integrative Biology, Massachusetts General Hospital, Boston, MA 02114, USA; Gastrointestinal Unit and Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital, Boston, MA 02114, USA; Center for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2016.10.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5131922PMC
November 2016

Gut microbiome and lipid metabolism: from associations to mechanisms.

Curr Opin Lipidol 2016 06;27(3):216-24

aDepartment of Geriatrics and Gastroenterology, Shanghai Key Laboratory of Clinical Geriatric Medicine, Huadong Hospital, Shanghai Medical College, Fudan University, Shanghai, P.R. China bDepartment of Paediatrics, Molecular Genetics cDepartment of Genetics, University of Groningen, University Medical Centre Groningen, Groningen, The Netherlands *Zheng Wang and Debby Koonen contributed equally to the writing of this article.

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http://dx.doi.org/10.1097/MOL.0000000000000308DOI Listing
June 2016

Population-level analysis of gut microbiome variation.

Science 2016 Apr 28;352(6285):560-4. Epub 2016 Apr 28.

KU Leuven-University of Leuven, Department of Microbiology and Immunology, Leuven, Belgium. VIB, Center for the Biology of Disease, Leuven, Belgium. Vrije Universiteit Brussel, Faculty of Sciences and Bioengineering Sciences, Microbiology Unit, Brussels, Belgium.

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http://dx.doi.org/10.1126/science.aad3503DOI Listing
April 2016

GWAS as a Driver of Gene Discovery in Cardiometabolic Diseases.

Trends Endocrinol Metab 2015 Dec 18;26(12):722-732. Epub 2015 Nov 18.

Molecular Genetics Section, Department of Pediatrics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.tem.2015.10.004DOI Listing
December 2015

The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids.

Circ Res 2015 Oct 10;117(9):817-24. Epub 2015 Sep 10.

From the Department of Pediatrics (J.F., E.B., M.H.H.), Department of Genetics (J.F., M.J.B., M.C.C., E.F.T., A.M., J.A.M.D., J.M., L.F., C.W., A.Z.), and Department of Gastroenterology and Hepatology (F.I., R.K.W.), University of Groningen, University Medical Center Groningen, Groningen, The Netherlands; Top Institute Food and Nutrition, Wageningen, The Netherlands (E.F.T., J.A.M.D., A.Z.); Department of Immunology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Krakow, Poland (J.M.); Broad Institute of MIT and Harvard, Cambridge, MA (T.W.P., R.J.X., D.G.); and Gastrointestinal Unit and Center for the Study of Inflammatory Bowel Disease (R.J.X.) and Center for Computational and Integrative Biology (R.J.X.), Massachusetts General Hospital and Harvard Medical School, Boston.

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http://dx.doi.org/10.1161/CIRCRESAHA.115.306807DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4596485PMC
October 2015

The immunity-diet-microbiota axis in the development of metabolic syndrome.

Curr Opin Lipidol 2015 Apr;26(2):73-81

aDepartment of Pediatrics, Molecular Genetics, University of Groningen, University Medical Center Groningen, Groningen bDepartment of Molecular Genetics, Maastricht University, Maastricht cDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.

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http://dx.doi.org/10.1097/MOL.0000000000000154DOI Listing
April 2015

Apple or pear: size and shape matter.

Cell Metab 2015 Apr;21(4):507-8

Department of Genetics, University of Groningen, University Medical Center Groningen, 9712 CP Groningen, The Netherlands.

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http://dx.doi.org/10.1016/j.cmet.2015.03.016DOI Listing
April 2015

Systems genetics: From GWAS to disease pathways.

Biochim Biophys Acta 2014 Oct 2;1842(10):1903-1909. Epub 2014 May 2.

University of Groningen, University Medical Centre Groningen, Department of Genetics, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.bbadis.2014.04.025DOI Listing
October 2014

The genome revolution and its role in understanding complex diseases.

Biochim Biophys Acta 2014 Oct 13;1842(10):1889-1895. Epub 2014 May 13.

University of Groningen, University Medical Center Groningen, Department of Genetics, Groningen, The Netherlands.

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http://dx.doi.org/10.1016/j.bbadis.2014.05.002DOI Listing
October 2014

Pleiotropic effects of lipid genes on plasma glucose, HbA1c, and HOMA-IR levels.

Diabetes 2014 Sep 10;63(9):3149-58. Epub 2014 Apr 10.

Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands

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http://diabetes.diabetesjournals.org/cgi/doi/10.2337/db13-18
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http://dx.doi.org/10.2337/db13-1800DOI Listing
September 2014

Extraintestinal manifestations and complications in inflammatory bowel disease: from shared genetics to shared biological pathways.

Inflamm Bowel Dis 2014 Jun;20(6):987-94

Departments of *Genetics, and †Gastroenterology and Hepatology, University Medical Centre Groningen, University of Groningen, Groningen, the Netherlands.

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http://dx.doi.org/10.1097/MIB.0000000000000032DOI Listing
June 2014

Correlation of genetic risk and messenger RNA expression in a Th17/IL23 pathway analysis in inflammatory bowel disease.

Inflamm Bowel Dis 2014 May;20(5):777-82

Departments of *Genetics, and †Gastroenterology and Hepatology, University Medical Centre Groningen, University of Groningen, Groningen, the Netherlands.

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http://dx.doi.org/10.1097/MIB.0000000000000013DOI Listing
May 2014

Are hypertriglyceridemia and low HDL causal factors in the development of insulin resistance?

Atherosclerosis 2014 Mar 7;233(1):130-8. Epub 2014 Jan 7.

University of Groningen, University Medical Center Groningen, Department of Molecular Genetics, Groningen, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.atherosclerosis.2013.12.013DOI Listing
March 2014

Genetics of coronary artery disease: genome-wide association studies and beyond.

Atherosclerosis 2012 Nov 23;225(1):1-10. Epub 2012 May 23.

Unit of Genetic Epidemiology and Bioinformatics, Department of Epidemiology, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands.

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http://dx.doi.org/10.1016/j.atherosclerosis.2012.05.015DOI Listing
November 2012

Multi-ethnic studies in complex traits.

Hum Mol Genet 2011 Oct 2;20(R2):R206-13. Epub 2011 Sep 2.

Department of Genetics, University Medical Centre and University of Groningen, Groningen, The Netherlands.

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http://dx.doi.org/10.1093/hmg/ddr386DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3179384PMC
October 2011

Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.

Authors:
Louise V Wain Germaine C Verwoert Paul F O'Reilly Gang Shi Toby Johnson Andrew D Johnson Murielle Bochud Kenneth M Rice Peter Henneman Albert V Smith Georg B Ehret Najaf Amin Martin G Larson Vincent Mooser David Hadley Marcus Dörr Joshua C Bis Thor Aspelund Tõnu Esko A Cecile J W Janssens Jing Hua Zhao Simon Heath Maris Laan Jingyuan Fu Giorgio Pistis Jian'an Luan Pankaj Arora Gavin Lucas Nicola Pirastu Irene Pichler Anne U Jackson Rebecca J Webster Feng Zhang John F Peden Helena Schmidt Toshiko Tanaka Harry Campbell Wilmar Igl Yuri Milaneschi Jouke-Jan Hottenga Veronique Vitart Daniel I Chasman Stella Trompet Jennifer L Bragg-Gresham Behrooz Z Alizadeh John C Chambers Xiuqing Guo Terho Lehtimäki Brigitte Kühnel Lorna M Lopez Ozren Polašek Mladen Boban Christopher P Nelson Alanna C Morrison Vasyl Pihur Santhi K Ganesh Albert Hofman Suman Kundu Francesco U S Mattace-Raso Fernando Rivadeneira Eric J G Sijbrands Andre G Uitterlinden Shih-Jen Hwang Ramachandran S Vasan Thomas J Wang Sven Bergmann Peter Vollenweider Gérard Waeber Jaana Laitinen Anneli Pouta Paavo Zitting Wendy L McArdle Heyo K Kroemer Uwe Völker Henry Völzke Nicole L Glazer Kent D Taylor Tamara B Harris Helene Alavere Toomas Haller Aime Keis Mari-Liis Tammesoo Yurii Aulchenko Inês Barroso Kay-Tee Khaw Pilar Galan Serge Hercberg Mark Lathrop Susana Eyheramendy Elin Org Siim Sõber Xiaowen Lu Ilja M Nolte Brenda W Penninx Tanguy Corre Corrado Masciullo Cinzia Sala Leif Groop Benjamin F Voight Olle Melander Christopher J O'Donnell Veikko Salomaa Adamo Pio d'Adamo Antonella Fabretto Flavio Faletra Sheila Ulivi Fabiola M Del Greco Maurizio Facheris Francis S Collins Richard N Bergman John P Beilby Joseph Hung A William Musk Massimo Mangino So-Youn Shin Nicole Soranzo Hugh Watkins Anuj Goel Anders Hamsten Pierre Gider Marisa Loitfelder Marion Zeginigg Dena Hernandez Samer S Najjar Pau Navarro Sarah H Wild Anna Maria Corsi Andrew Singleton Eco J C de Geus Gonneke Willemsen Alex N Parker Lynda M Rose Brendan Buckley David Stott Marco Orru Manuela Uda Melanie M van der Klauw Weihua Zhang Xinzhong Li James Scott Yii-Der Ida Chen Gregory L Burke Mika Kähönen Jorma Viikari Angela Döring Thomas Meitinger Gail Davies John M Starr Valur Emilsson Andrew Plump Jan H Lindeman Peter A C 't Hoen Inke R König Janine F Felix Robert Clarke Jemma C Hopewell Halit Ongen Monique Breteler Stéphanie Debette Anita L Destefano Myriam Fornage Gary F Mitchell Nicholas L Smith Hilma Holm Kari Stefansson Gudmar Thorleifsson Unnur Thorsteinsdottir Nilesh J Samani Michael Preuss Igor Rudan Caroline Hayward Ian J Deary H-Erich Wichmann Olli T Raitakari Walter Palmas Jaspal S Kooner Ronald P Stolk J Wouter Jukema Alan F Wright Dorret I Boomsma Stefania Bandinelli Ulf B Gyllensten James F Wilson Luigi Ferrucci Reinhold Schmidt Martin Farrall Tim D Spector Lyle J Palmer Jaakko Tuomilehto Arne Pfeufer Paolo Gasparini David Siscovick David Altshuler Ruth J F Loos Daniela Toniolo Harold Snieder Christian Gieger Pierre Meneton Nicholas J Wareham Ben A Oostra Andres Metspalu Lenore Launer Rainer Rettig David P Strachan Jacques S Beckmann Jacqueline C M Witteman Jeanette Erdmann Ko Willems van Dijk Eric Boerwinkle Michael Boehnke Paul M Ridker Marjo-Riitta Jarvelin Aravinda Chakravarti Goncalo R Abecasis Vilmundur Gudnason Christopher Newton-Cheh Daniel Levy Patricia B Munroe Bruce M Psaty Mark J Caulfield Dabeeru C Rao Martin D Tobin Paul Elliott Cornelia M van Duijn

Nat Genet 2011 Sep 11;43(10):1005-11. Epub 2011 Sep 11.

Department of Health Sciences, University of Leicester, Leicester, UK.

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http://dx.doi.org/10.1038/ng.922DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3445021PMC
September 2011

Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.

Authors:
Nona Sotoodehnia Aaron Isaacs Paul I W de Bakker Marcus Dörr Christopher Newton-Cheh Ilja M Nolte Pim van der Harst Martina Müller Mark Eijgelsheim Alvaro Alonso Andrew A Hicks Sandosh Padmanabhan Caroline Hayward Albert Vernon Smith Ozren Polasek Steven Giovannone Jingyuan Fu Jared W Magnani Kristin D Marciante Arne Pfeufer Sina A Gharib Alexander Teumer Man Li Joshua C Bis Fernando Rivadeneira Thor Aspelund Anna Köttgen Toby Johnson Kenneth Rice Mark P S Sie Ying A Wang Norman Klopp Christian Fuchsberger Sarah H Wild Irene Mateo Leach Karol Estrada Uwe Völker Alan F Wright Folkert W Asselbergs Jiaxiang Qu Aravinda Chakravarti Moritz F Sinner Jan A Kors Astrid Petersmann Tamara B Harris Elsayed Z Soliman Patricia B Munroe Bruce M Psaty Ben A Oostra L Adrienne Cupples Siegfried Perz Rudolf A de Boer André G Uitterlinden Henry Völzke Timothy D Spector Fang-Yu Liu Eric Boerwinkle Anna F Dominiczak Jerome I Rotter Gé van Herpen Daniel Levy H-Erich Wichmann Wiek H van Gilst Jacqueline C M Witteman Heyo K Kroemer W H Linda Kao Susan R Heckbert Thomas Meitinger Albert Hofman Harry Campbell Aaron R Folsom Dirk J van Veldhuisen Christine Schwienbacher Christopher J O'Donnell Claudia Beu Volpato Mark J Caulfield John M Connell Lenore Launer Xiaowen Lu Lude Franke Rudolf S N Fehrmann Gerard te Meerman Harry J M Groen Rinse K Weersma Leonard H van den Berg Cisca Wijmenga Roel A Ophoff Gerjan Navis Igor Rudan Harold Snieder James F Wilson Peter P Pramstaller David S Siscovick Thomas J Wang Vilmundur Gudnason Cornelia M van Duijn Stephan B Felix Glenn I Fishman Yalda Jamshidi Bruno H Ch Stricker Nilesh J Samani Stefan Kääb Dan E Arking

Nat Genet 2010 Dec 14;42(12):1068-76. Epub 2010 Nov 14.

Division of Cardiology, Department of Medicine, University of Washington, Seattle, Washington, USA.

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http://dx.doi.org/10.1038/ng.716DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338195PMC
December 2010

Analysis of HLA and non-HLA alleles can identify individuals at high risk for celiac disease.

Gastroenterology 2009 Sep 18;137(3):834-40, 840.e1-3. Epub 2009 May 18.

Department of Genetics, University Medical Centre of Groningen, University of Groningen, Groningen, The Netherlands.

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http://dx.doi.org/10.1053/j.gastro.2009.05.040DOI Listing
September 2009

designGG: an R-package and web tool for the optimal design of genetical genomics experiments.

BMC Bioinformatics 2009 Jun 18;10:188. Epub 2009 Jun 18.

Groningen Bioinformatics Center, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Haren, The Netherlands.

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http://dx.doi.org/10.1186/1471-2105-10-188DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2706229PMC
June 2009

Defining gene and QTL networks.

Curr Opin Plant Biol 2009 Apr 3;12(2):241-6. Epub 2009 Feb 3.

Groningen Bioinformatics Centre, University of Groningen, The Netherlands.

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http://dx.doi.org/10.1016/j.pbi.2009.01.003DOI Listing
April 2009

Optimal design of genetic studies of gene expression with two-color microarrays in outbred crosses.

Genetics 2008 Nov 14;180(3):1691-8. Epub 2008 Sep 14.

Roslin Institute (Edinburgh), University of Edinburgh, Roslin Biocentre, Roslin, Midlothian, United Kingdom.

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http://dx.doi.org/10.1534/genetics.108.090308DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2581968PMC
November 2008

Genetical genomics: spotlight on QTL hotspots.

PLoS Genet 2008 Oct 24;4(10):e1000232. Epub 2008 Oct 24.

Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Kerklaan 30, Haren, The Netherlands.

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http://dx.doi.org/10.1371/journal.pgen.1000232DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2563687PMC
October 2008

MetaNetwork: a computational protocol for the genetic study of metabolic networks.

Nat Protoc 2007 ;2(3):685-94

Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Kerklaan 30, NL-9751 NN Haren, The Netherlands.

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http://dx.doi.org/10.1038/nprot.2007.96DOI Listing
June 2007

Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci.

Proc Natl Acad Sci U S A 2007 Jan 19;104(5):1708-13. Epub 2007 Jan 19.

Laboratory of Genetics, Wageningen University, Arboretumlaan 4, NL-6703 BD Wageningen, The Netherlands.

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http://dx.doi.org/10.1073/pnas.0610429104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1785256PMC
January 2007

Mapping determinants of gene expression plasticity by genetical genomics in C. elegans.

PLoS Genet 2006 Dec 13;2(12):e222. Epub 2006 Nov 13.

Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Haren, The Netherlands.

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http://dx.plos.org/10.1371/journal.pgen.0020222
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http://dx.doi.org/10.1371/journal.pgen.0020222DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1756913PMC
December 2006

The genetics of plant metabolism.

Nat Genet 2006 Jul 4;38(7):842-9. Epub 2006 Jun 4.

Laboratory of Genetics, Wageningen University, Arboretumlaan 4, NL-6703 BD Wageningen, The Netherlands.

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http://dx.doi.org/10.1038/ng1815DOI Listing
July 2006

Optimal design and analysis of genetic studies on gene expression.

Genetics 2006 Mar 15;172(3):1993-9. Epub 2005 Dec 15.

Groningen Bioinformatics Center, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9751NN Haren, The Netherlands.

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http://dx.doi.org/10.1534/genetics.105.047001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1456314PMC
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Combining microarrays and genetic analysis.

Brief Bioinform 2005 Jun;6(2):135-45

Groningen Bioinformatics Centre, University of Groningen, Kerklaan 30, 9751 NN, Haren, the Netherlands.

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June 2005

Signal transduction of bone morphogenetic proteins in osteoblast differentiation.

J Bone Joint Surg Am 2003 ;85-A Suppl 3:34-8

The Netherlands Cancer Institute, Amsterdam.

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October 2003