Jingchun Zhu

University of California Santa Cruz Genomics Institute, Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, California, United States of America; Howard Hughes Medical Institute, Chevy Chase, Maryland, United States of America.

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July 2015

The UCSC Cancer Genomics Browser: update 2015.

Authors:

Mary Goldman Brian Craft Teresa Swatloski Melissa Cline Olena Morozova Mark Diekhans David Haussler Jingchun Zhu

Nucleic Acids Res 2015 Jan 11;43(Database issue):D812-7. Epub 2014 Nov 11.

Center for Biomolecular Science and Engineering, University of California at Santa Cruz, Santa Cruz, CA 95064, USA

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January 2015

Realizing the promise of reverse phase protein arrays for clinical, translational, and basic research: a workshop report: the RPPA (Reverse Phase Protein Array) society.

Authors:

Rehan Akbani Karl-Friedrich Becker Neil Carragher Ted Goldstein Leanne de Koning Ulrike Korf Lance Liotta Gordon B Mills Satoshi S Nishizuka Michael Pawlak Emanuel F Petricoin Harvey B Pollard Bryan Serrels Jingchun Zhu

Mol Cell Proteomics 2014 Jul 28;13(7):1625-43. Epub 2014 Apr 28.

¶Center for Biomolecular Science and Engineering, University of California, Santa Cruz, California;

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July 2014

Exploring TCGA Pan-Cancer data at the UCSC Cancer Genomics Browser.

Authors:

Melissa S Cline Brian Craft Teresa Swatloski Mary Goldman Singer Ma David Haussler Jingchun Zhu

Sci Rep 2013 Oct 2;3:2652. Epub 2013 Oct 2.

Center for Biomolecular Science and Engineering, University of California, Santa Cruz.

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October 2013

The UCSC Cancer Genomics Browser: update 2013.

Authors:

Mary Goldman Brian Craft Teresa Swatloski Kyle Ellrott Melissa Cline Mark Diekhans Singer Ma Chris Wilks Josh Stuart David Haussler Jingchun Zhu

Nucleic Acids Res 2013 Jan 29;41(Database issue):D949-54. Epub 2012 Oct 29.

Center for Biomolecular Science and Engineering, University of California at Santa Cruz, Santa Cruz, CA 95064, USA.

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January 2013

A DNA hypermethylation module for the stem/progenitor cell signature of cancer.

Authors:

Hariharan Easwaran Sarah E Johnstone Leander Van Neste Joyce Ohm Tim Mosbruger Qiuju Wang Martin J Aryee Patrick Joyce Nita Ahuja Dan Weisenberger Eric Collisson Jingchun Zhu Srinivasan Yegnasubramanian William Matsui Stephen B Baylin

Genome Res 2012 May 5;22(5):837-49. Epub 2012 Mar 5.

The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins and the Johns Hopkins Medical Institutions, Baltimore, MD 21117, USA.

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May 2012

The Human Epigenome Browser at Washington University.

Authors:

Xin Zhou Brett Maricque Mingchao Xie Daofeng Li Vasavi Sundaram Eric A Martin Brian C Koebbe Cydney Nielsen Martin Hirst Peggy Farnham Robert M Kuhn Jingchun Zhu Ivan Smirnov W James Kent David Haussler Pamela A F Madden Joseph F Costello Ting Wang

Nat Methods 2011 Nov 29;8(12):989-90. Epub 2011 Nov 29.

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November 2011

Human tRNA genes function as chromatin insulators.

Authors:

Jesse R Raab Jonathan Chiu Jingchun Zhu Sol Katzman Sreenivasulu Kurukuti Paul A Wade David Haussler Rohinton T Kamakaka

EMBO J 2012 Jan 15;31(2):330-50. Epub 2011 Nov 15.

Department of MCD Biology, University of California, Santa Cruz, CA, USA.

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January 2012

The UCSC Cancer Genomics Browser: update 2011.

Authors:

J Zachary Sanborn Stephen C Benz Brian Craft Christopher Szeto Kord M Kober Laurence Meyer Charles J Vaske Mary Goldman Kayla E Smith Robert M Kuhn Donna Karolchik W James Kent Joshua M Stuart David Haussler Jingchun Zhu

Nucleic Acids Res 2011 Jan 8;39(Database issue):D951-9. Epub 2010 Nov 8.

Department of Biomolecular Engineering, Center for Biomolecular Science and Engineering, University of California at Santa Cruz, Santa Cruz, CA 95064, USA.

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January 2011