Jingchun Zhu

Jingchun Zhu

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Jingchun Zhu

Jingchun Zhu

Publications by authors named "Jingchun Zhu"

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Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma.

Authors:
W Marston Linehan Paul T Spellman Christopher J Ricketts Chad J Creighton Suzanne S Fei Caleb Davis David A Wheeler Bradley A Murray Laura Schmidt Cathy D Vocke Myron Peto Abu Amar M Al Mamun Eve Shinbrot Anurag Sethi Samira Brooks W Kimryn Rathmell Angela N Brooks Katherine A Hoadley A Gordon Robertson Denise Brooks Reanne Bowlby Sara Sadeghi Hui Shen Daniel J Weisenberger Moiz Bootwalla Stephen B Baylin Peter W Laird Andrew D Cherniack Gordon Saksena Scott Haake Jun Li Han Liang Yiling Lu Gordon B Mills Rehan Akbani Mark D M Leiserson Benjamin J Raphael Pavana Anur Donald Bottaro Laurence Albiges Nandita Barnabas Toni K Choueiri Bogdan Czerniak Andrew K Godwin A Ari Hakimi Thai H Ho James Hsieh Michael Ittmann William Y Kim Bhavani Krishnan Maria J Merino Kenna R Mills Shaw Victor E Reuter Ed Reznik Carl S Shelley Brian Shuch Sabina Signoretti Ramaprasad Srinivasan Pheroze Tamboli George Thomas Satish Tickoo Kenneth Burnett Daniel Crain Johanna Gardner Kevin Lau David Mallery Scott Morris Joseph D Paulauskis Robert J Penny Candace Shelton W Troy Shelton Mark Sherman Eric Thompson Peggy Yena Melissa T Avedon Jay Bowen Julie M Gastier-Foster Mark Gerken Kristen M Leraas Tara M Lichtenberg Nilsa C Ramirez Tracie Santos Lisa Wise Erik Zmuda John A Demchok Ina Felau Carolyn M Hutter Margi Sheth Heidi J Sofia Roy Tarnuzzer Zhining Wang Liming Yang Jean C Zenklusen Jiashan Zhang Brenda Ayala Julien Baboud Sudha Chudamani Jia Liu Laxmi Lolla Rashi Naresh Todd Pihl Qiang Sun Yunhu Wan Ye Wu Adrian Ally Miruna Balasundaram Saianand Balu Rameen Beroukhim Tom Bodenheimer Christian Buhay Yaron S N Butterfield Rebecca Carlsen Scott L Carter Hsu Chao Eric Chuah Amanda Clarke Kyle R Covington Mahmoud Dahdouli Ninad Dewal Noreen Dhalla Harsha V Doddapaneni Jennifer A Drummond Stacey B Gabriel Richard A Gibbs Ranabir Guin Walker Hale Alicia Hawes D Neil Hayes Robert A Holt Alan P Hoyle Stuart R Jefferys Steven J M Jones Corbin D Jones Divya Kalra Christie Kovar Lora Lewis Jie Li Yussanne Ma Marco A Marra Michael Mayo Shaowu Meng Matthew Meyerson Piotr A Mieczkowski Richard A Moore Donna Morton Lisle E Mose Andrew J Mungall Donna Muzny Joel S Parker Charles M Perou Jeffrey Roach Jacqueline E Schein Steven E Schumacher Yan Shi Janae V Simons Payal Sipahimalani Tara Skelly Matthew G Soloway Carrie Sougnez Angela Tam Donghui Tan Nina Thiessen Umadevi Veluvolu Min Wang Matthew D Wilkerson Tina Wong Junyuan Wu Liu Xi Jane Zhou Jason Bedford Fengju Chen Yao Fu Mark Gerstein David Haussler Katayoon Kasaian Phillip Lai Shiyun Ling Amie Radenbaugh David Van Den Berg John N Weinstein Jingchun Zhu Monique Albert Iakovina Alexopoulou Jeremiah J Andersen J Todd Auman John Bartlett Sheldon Bastacky Julie Bergsten Michael L Blute Lori Boice Roni J Bollag Jeff Boyd Erik Castle Ying-Bei Chen John C Cheville Erin Curley Benjamin Davies April DeVolk Rajiv Dhir Laura Dike John Eckman Jay Engel Jodi Harr Ronald Hrebinko Mei Huang Lori Huelsenbeck-Dill Mary Iacocca Bruce Jacobs Michael Lobis Jodi K Maranchie Scott McMeekin Jerome Myers Joel Nelson Jeremy Parfitt Anil Parwani Nicholas Petrelli Brenda Rabeno Somak Roy Andrew L Salner Joel Slaton Melissa Stanton R Houston Thompson Leigh Thorne Kelinda Tucker Paul M Weinberger Cynthia Winemiller Leigh Anne Zach Rosemary Zuna

RADIA: RNA and DNA integrated analysis for somatic mutation detection.

PLoS One 2014 18;9(11):e111516. Epub 2014 Nov 18.

University of California Santa Cruz Genomics Institute, Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, California, United States of America; Howard Hughes Medical Institute, Chevy Chase, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0111516PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4236012PMC
July 2015

The UCSC Cancer Genomics Browser: update 2015.

Nucleic Acids Res 2015 Jan 11;43(Database issue):D812-7. Epub 2014 Nov 11.

Center for Biomolecular Science and Engineering, University of California at Santa Cruz, Santa Cruz, CA 95064, USA

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http://dx.doi.org/10.1093/nar/gku1073DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383911PMC
January 2015

Exploring TCGA Pan-Cancer data at the UCSC Cancer Genomics Browser.

Sci Rep 2013 Oct 2;3:2652. Epub 2013 Oct 2.

Center for Biomolecular Science and Engineering, University of California, Santa Cruz.

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http://dx.doi.org/10.1038/srep02652DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3788369PMC
October 2013

The UCSC Cancer Genomics Browser: update 2013.

Nucleic Acids Res 2013 Jan 29;41(Database issue):D949-54. Epub 2012 Oct 29.

Center for Biomolecular Science and Engineering, University of California at Santa Cruz, Santa Cruz, CA 95064, USA.

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http://dx.doi.org/10.1093/nar/gks1008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531186PMC
January 2013

Human tRNA genes function as chromatin insulators.

EMBO J 2012 Jan 15;31(2):330-50. Epub 2011 Nov 15.

Department of MCD Biology, University of California, Santa Cruz, CA, USA.

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http://dx.doi.org/10.1038/emboj.2011.406DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3261562PMC
January 2012

The UCSC Cancer Genomics Browser: update 2011.

Nucleic Acids Res 2011 Jan 8;39(Database issue):D951-9. Epub 2010 Nov 8.

Department of Biomolecular Engineering, Center for Biomolecular Science and Engineering, University of California at Santa Cruz, Santa Cruz, CA 95064, USA.

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http://dx.doi.org/10.1093/nar/gkq1113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013705PMC
January 2011

Comparative genomics search for losses of long-established genes on the human lineage.

PLoS Comput Biol 2007 Dec;3(12):e247

Center for Biomolecular Science and Engineering, University of California Santa Cruz, Santa Cruz, California, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.0030247DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2134963PMC
December 2007

A Bayesian network driven approach to model the transcriptional response to nitric oxide in Saccharomyces cerevisiae.

PLoS One 2006 Dec 20;1:e94. Epub 2006 Dec 20.

Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000094PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1762306PMC
December 2006

The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum.

PLoS Biol 2003 Oct 18;1(1):E5. Epub 2003 Aug 18.

Department of Biochemistry and Biophysics, University of California, San Francisco, USA.

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http://dx.plos.org/10.1371/journal.pbio.0000005
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http://dx.doi.org/10.1371/journal.pbio.0000005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC176545PMC
October 2003

Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray.

Genome Biol 2003 31;4(2):R9. Epub 2003 Jan 31.

Department of Biochemistry and Biophysics, University of California San Francisco, 513 Parnassus Ave, San Francisco, CA 94143-0448, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151308PMC
http://dx.doi.org/10.1186/gb-2003-4-2-r9DOI Listing
March 2003