Jin-Dong Kim

Jin-Dong Kim

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Jin-Dong Kim

Jin-Dong Kim

Publications by authors named "Jin-Dong Kim"

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Open Agile text mining for bioinformatics: the PubAnnotation ecosystem.

Bioinformatics 2019 Nov;35(21):4372-4380

Computational Bioscience Program, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, USA.

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http://dx.doi.org/10.1093/bioinformatics/btz227DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6821251PMC
November 2019

Introduction to BLAH5 special issue: recent progress on interoperability of biomedical text mining.

Genomics Inform 2019 Jun 27;17(2):e12. Epub 2019 Jun 27.

Institute of Computational Linguistics, University of Zurich, Zurich CH-8050, Switzerland.

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http://dx.doi.org/10.5808/GI.2019.17.2.e12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6808629PMC
June 2019

Towards cross-platform interoperability for machine-assisted text annotation.

Genomics Inform 2019 Jun 26;17(2):e19. Epub 2019 Jun 26.

Vassar College, Poughkeepsie, NY 12604-0520, USA.

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http://dx.doi.org/10.5808/GI.2019.17.2.e19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6808624PMC
June 2019

GOF/LOF knowledge inference with tensor decomposition in support of high order link discovery for gene, mutation and disease.

Math Biosci Eng 2019 02;16(3):1376-1391

College of Informatics, Huazhong Agricultural University, 430070, Wuhan, China.

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http://dx.doi.org/10.3934/mbe.2019067DOI Listing
February 2019

PubCaseFinder: A Case-Report-Based, Phenotype-Driven Differential-Diagnosis System for Rare Diseases.

Am J Hum Genet 2018 09 30;103(3):389-399. Epub 2018 Aug 30.

Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo-to, 113-0032, Japan.

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http://dx.doi.org/10.1016/j.ajhg.2018.08.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6128307PMC
September 2018

Exploring biomedical ontology mappings with graph theory methods.

PeerJ 2017 2;5:e2990. Epub 2017 Mar 2.

Database Center for Life Science, Research Organization of Information and Systems , Tokyo , Japan.

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http://dx.doi.org/10.7717/peerj.2990DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5337086PMC
March 2017

Diagnostic performance of gadoxetic acid (Primovist)-enhanced MR imaging versus CT during hepatic arteriography and portography for small hypervascular hepatocellular carcinoma.

Medicine (Baltimore) 2016 Sep;95(39):e4903

aDivision of Gastroenterology and Hepatology, Department of Internal Medicine Sungbuk-ku bDepartment of Radiology cDivision of Gastroenterology and Hepatology, Department of Internal Medicine, Cheju Halla General Hospital, Jeju-do dDepartment of Surgery eDepartment of Biostatistics, Korea University College of Medicine, Seoul, Republic of Korea.

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http://dx.doi.org/10.1097/MD.0000000000004903DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5265917PMC
September 2016

Total Colonic Decompression After Colonoscopy Decreases Postcolonoscopy Abdominal Pain: A Randomized Double-Blind Controlled Trial.

J Clin Gastroenterol 2016 Jan;50(1):59-65

*Department of Internal Medicine, Institute of Gastroenterology, Hallym University College of Medicine, Hallym University Dongtan Sacred Heart Hospital, Gyeonggi-do †Department of Internal Medicine, Digestive Disease Center, Cheju Halla General Hospital, Jeju, Korea.

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http://dx.doi.org/10.1097/MCG.0000000000000329DOI Listing
January 2016

Outcome of transarterial chemoembolization-based multi-modal treatment in patients with unresectable hepatocellular carcinoma.

World J Gastroenterol 2015 Feb;21(8):2395-404

Do Seon Song, Soon Woo Nam, Si Hyun Bae, Jeong Won Jang, Myeong Jun Song, Sung Won Lee, Hee Yeon Kim, Jong Young Choi, Seung Kew Yoon, Department of Internal Medicine, College of Medicine, The Catholic University of Korea, Seoul 137-701, South Korea.

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http://dx.doi.org/10.3748/wjg.v21.i8.2395DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4342916PMC
February 2015

Clinical significance of hepatitis B virus precore and core promoter variants in Korean patients with chronic hepatitis B.

J Clin Gastroenterol 2015 Jan;49(1):61-8

*Department of Internal Medicine, Division of Gastroenterology and Hepatology, Korea University College of Medicine, Seoul †Department of Internal Medicine, Division of Gastroenterology and Hepatology, Cheju Halla General Hospital, Cheju, Korea.

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http://dx.doi.org/10.1097/MCG.0000000000000052DOI Listing
January 2015

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

J Biomed Semantics 2014 Feb 5;5(1). Epub 2014 Feb 5.

Database Center for Life Science, Research Organization of Information and Systems, 2-11-16, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

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http://dx.doi.org/10.1186/2041-1480-5-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3978116PMC
February 2014

Percutaneous cholecystostomy is appropriate as definitive treatment for acute cholecystitis in critically ill patients: a single center, cross-sectional study.

Korean J Gastroenterol 2014 Jan;63(1):32-8

Digestive Disease Center, Department of Internal Medicine, Cheju Halla General Hospital, Doreongno 65, Jeju 690-766, Korea.

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http://dx.doi.org/10.4166/kjg.2014.63.1.32DOI Listing
January 2014

Introducing glycomics data into the Semantic Web.

J Biomed Semantics 2013 Nov 26;4(1):39. Epub 2013 Nov 26.

Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba Central-2, Umezono 1-1-1, Tsukuba 305-8568, Japan.

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http://dx.doi.org/10.1186/2041-1480-4-39DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4177142PMC
November 2013

Literature mining solutions for life science research.

Adv Bioinformatics 2013 8;2013:320436. Epub 2013 Jan 8.

Disease Translational Informatics, F. Hoffmann-La Roche Inc., Nutley, NJ 07110, USA.

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http://dx.doi.org/10.1155/2013/320436DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3556398PMC
February 2013

Improving protein coreference resolution by simple semantic classification.

BMC Bioinformatics 2012 Nov 17;13:304. Epub 2012 Nov 17.

National Institute of Informatics, Hitotsubashi 2-1-2, Chiyoda-ku, Tokyo, Japan.

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http://dx.doi.org/10.1186/1471-2105-13-304DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3582588PMC
November 2012

Spinal cord injury after conducting transcatheter arterial chemoembolization for costal metastasis of hepatocellular carcinoma.

Clin Mol Hepatol 2012 Sep 25;18(3):316-20. Epub 2012 Sep 25.

Division of Gastroenterology and Hepatology, Department of Internal Medicine, Korea University College of Medicine, Seoul, Korea.

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http://dx.doi.org/10.3350/cmh.2012.18.3.316DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3467436PMC
September 2012

Family history influences the early onset of hepatocellular carcinoma.

World J Gastroenterol 2012 Jun;18(21):2661-7

Department of Internal Medicine, The Catholic University of Korea, Seoul 137-701, South Korea.

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http://dx.doi.org/10.3748/wjg.v18.i21.2661DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3370003PMC
June 2012

The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011.

BMC Bioinformatics 2012 Jun 26;13 Suppl 11:S1. Epub 2012 Jun 26.

Database Center for Life Science, Research Organization of Information and Science, 2-11-16 Yayoi, Bunkyo-ku, Tokyo, Japan.

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http://dx.doi.org/10.1186/1471-2105-13-S11-S1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3384256PMC
June 2012

Risk of HBV reactivation according to viral status and treatment intensity in patients with hepatocellular carcinoma.

Antivir Ther 2011 ;16(7):969-77

Department of Internal Medicine, College of Medicine, The Catholic University of Korea, Seoul, Korea.

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http://dx.doi.org/10.3851/IMP1840DOI Listing
April 2012

AGRA: analysis of gene ranking algorithms.

Bioinformatics 2011 Apr 23;27(8):1185-6. Epub 2011 Feb 23.

Faculty of Health Sciences, University of Maribor, Maribor, Slovenia.

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http://dx.doi.org/10.1093/bioinformatics/btr097DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3072556PMC
April 2011

[Durability of sustained virologic response in chronic hepatitis C: analysis of factors related to relapse after sustained virologic response with peginterferon plus ribavirin combination therapy].

Korean J Gastroenterol 2011 Mar;57(3):173-9

Department of Internal Medicine, WHO Collaborating Center on Viral Hepatitis, The Catholic University of Korea College of Medicine, Korea.

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http://dx.doi.org/10.4166/2011.57.3.173DOI Listing
March 2011

Improving the inter-corpora compatibility for protein annotations.

J Bioinform Comput Biol 2010 Oct;8(5):901-16

Department of Computer Science, University of Tokyo, 7-3-1 Hongo, Bunkyo-Ku, Tokyo, 113-0033, Japan.

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http://dx.doi.org/10.1142/s0219720010004999DOI Listing
October 2010

A re-evaluation of biomedical named entity-term relations.

J Bioinform Comput Biol 2010 Oct;8(5):917-28

Department of Computer Science, University of Tokyo, Tokyo, Japan.

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http://dx.doi.org/10.1142/s0219720010005014DOI Listing
October 2010

Ischemic colitis and portal venous gas.

Gastrointest Endosc 2010 Jun;71(7):1302-3

Department of Internal Medicine, College of Medicine, The Catholic University of Korea, Suwon, Gyeonggi-do, Korea.

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http://dx.doi.org/10.1016/j.gie.2010.01.014DOI Listing
June 2010

Beneficial effect of metronomic chemotherapy on tumor suppression and survival in a rat model of hepatocellular carcinoma with liver cirrhosis.

Cancer Chemother Pharmacol 2010 May 23;65(6):1029-37. Epub 2009 Aug 23.

Department of Internal Medicine and WHO Collaborating for Reference and Research on Viral Hepatitis, The Catholic University of Korea, Seoul, Korea.

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http://dx.doi.org/10.1007/s00280-009-1108-4DOI Listing
May 2010

[A case of ulcerative colitis found in a patient whose parent has Crohn's disease].

Korean J Gastroenterol 2010 May;55(5):336-9

Department of Internal Medicine, College of Medicine, The Catholic University of Korea, Suwon, Korea.

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http://dx.doi.org/10.4166/kjg.2010.55.5.336DOI Listing
May 2010

Acute thermal injury of the esophagus from solid food: clinical course and endoscopic findings.

J Korean Med Sci 2010 Mar 17;25(3):489-91. Epub 2010 Feb 17.

Department of Internal Medicine, College of Medicine, The Catholic University of Korea, Seoul, Korea.

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http://dx.doi.org/10.3346/jkms.2010.25.3.489DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2826729PMC
March 2010

Event extraction with complex event classification using rich features.

J Bioinform Comput Biol 2010 Feb;8(1):131-46

Department of Computer Science, University of Tokyo, Hongo 7-3-1, Bunkyo-ku, Tokyo, Japan.

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http://dx.doi.org/10.1142/s0219720010004586DOI Listing
February 2010

Hepatitis B virus load in serum does not reflect histologic activity in patients with decompensated cirrhosis.

Clin Gastroenterol Hepatol 2010 Jan 2;8(1):60-5. Epub 2009 Oct 2.

Department of Internal Medicine, College of Medicine, The Catholic University of Korea, Seoul, Korea.

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http://linkinghub.elsevier.com/retrieve/pii/S154235650900994
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http://dx.doi.org/10.1016/j.cgh.2009.09.026DOI Listing
January 2010

Investigating heterogeneous protein annotations toward cross-corpora utilization.

BMC Bioinformatics 2009 Dec 9;10:403. Epub 2009 Dec 9.

Department of Computer Science, School of Information Science and Technology, University of Tokyo, Tokyo, Japan.

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http://dx.doi.org/10.1186/1471-2105-10-403DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2804683PMC
December 2009

High expression of Snail mRNA in blood from hepatocellular carcinoma patients with extra-hepatic metastasis.

Clin Exp Metastasis 2009 16;26(7):759-67. Epub 2009 Jun 16.

Department of Internal Medicine, College of Medicine, The Catholic University of Korea, Seoul, Korea.

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http://dx.doi.org/10.1007/s10585-009-9275-6DOI Listing
November 2009

Risk factors for cholecystectomy in patients with gallbladder stones after endoscopic clearance of common bile duct stones.

Surg Endosc 2009 Aug 1;23(8):1713-9. Epub 2009 Jan 1.

Department of Internal Medicine, College of Medicine, The Catholic University of Korea, St. Vincent's Hospital, Ji-dong, Paldal-gu, Suwon-si, Gyeonggi-do, 442-723, South Korea.

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http://dx.doi.org/10.1007/s00464-008-0269-2DOI Listing
August 2009

[Inter-departmental differences in the eradication therapy for Helicobacter pylori infection: a single center study].

Korean J Gastroenterol 2009 Apr;53(4):221-7

Department of Internal Medicine, College of Medicine, The Catholic University of Korea, Seoul, Korea.

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April 2009

Acute abdomen: superior mesenteric artery occlusion.

Gastrointest Endosc 2008 Nov 14;68(5):1001-2; discussion 1002. Epub 2008 Jul 14.

Department of Internal Medicine, The Catholic University of Korea College of Medicine, Suwon, Korea.

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http://dx.doi.org/10.1016/j.gie.2008.04.036DOI Listing
November 2008

[A case of carcinosarcoma in a patient with corrosive esophagitis].

Korean J Gastroenterol 2008 Jul;52(1):42-7

Departments of Internal Medicine, College of Medicine, The Catholic University of Korea, St. Vincent's Hospital, Suwon, Korea.

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July 2008

Clinical challenges and images in GI. Diffuse hepatic hemangiomatosis involving the entire liver.

Gastroenterology 2008 Jun 16;134(7):1830, 2197. Epub 2008 May 16.

Department of Internal Medicine, St. Vincent's Hospital, The Catholic University of Korea, Suwon, Korea.

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http://dx.doi.org/10.1053/j.gastro.2008.05.006DOI Listing
June 2008

Ischemic colitis associated with intestinal vasculitis: histological proof in systemic lupus erythematosus.

World J Gastroenterol 2008 Jun;14(22):3591-3

Department of Internal Medicine, College of Medicine, The Catholic University of Korea, St. Vincent's Hospital Ji-dong, Suwon Si, Paldal-gu, Gyeonggi-Do 442-723, South Korea.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2716627PMC
http://dx.doi.org/10.3748/wjg.14.3591DOI Listing
June 2008

New challenges for text mining: mapping between text and manually curated pathways.

BMC Bioinformatics 2008 Apr 11;9 Suppl 3:S5. Epub 2008 Apr 11.

Department of Computer Science, Graduate School of Information Science and Technology, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, Japan.

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http://dx.doi.org/10.1186/1471-2105-9-S3-S5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2352872PMC
April 2008

Corpus annotation for mining biomedical events from literature.

BMC Bioinformatics 2008 Jan 8;9:10. Epub 2008 Jan 8.

Department of Computer Science, School of Information Science and Technology, University of Tokyo, Tokyo, Japan.

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http://dx.doi.org/10.1186/1471-2105-9-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2267702PMC
January 2008

A case of combined hepatocellular-cholangiocarcinoma with underlying schistosomiasis.

Korean J Intern Med 2007 Dec;22(4):283-6

Department of Internal Medicine, The Catholic University of Korea College of Medicine, Seoul, Korea.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2687661PMC
http://dx.doi.org/10.3904/kjim.2007.22.4.283DOI Listing
December 2007

Extraction of gene-disease relations from Medline using domain dictionaries and machine learning.

Pac Symp Biocomput 2006 :4-15

Tsujii Laboratory, Room 615, 7th Building of Science, University of Tokyo, Hongo 7-3-1, Bunkyo-ku, Tokyo, 113-0033, Japan.

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January 2007

Acute pancreatitis and cholangitis caused by hemobilia from biliary papillomatosis.

Gastrointest Endosc 2007 Jan;65(1):177-80

Division of Gastroenterology, Department of Internal Medicine, College of Medicine, The Catholic University of Korea, Seoul, (Republic of) Korea.

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http://dx.doi.org/10.1016/j.gie.2006.07.040DOI Listing
January 2007

Automatic recognition of topic-classified relations between prostate cancer and genes using MEDLINE abstracts.

BMC Bioinformatics 2006 Nov 24;7 Suppl 3:S4. Epub 2006 Nov 24.

Department of Computer Science, Graduate School of Information Science and Technology, The University of Tokyo, Tokyo, Japan.

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http://dx.doi.org/10.1186/1471-2105-7-S3-S4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1764448PMC
November 2006

Trousseau's syndrome in association with cholangiocarcinoma: positive tests for coagulation factors and anticardiolipin antibody.

J Korean Med Sci 2006 Feb;21(1):155-9

Department of Internal Medicine, College of Medicine, WHO Collaborating Center on Viral Hepatitis, The Catholic University of Korea, Seoul, Korea.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2733966PMC
http://dx.doi.org/10.3346/jkms.2006.21.1.155DOI Listing
February 2006

[A case of acute hepatitis E with the travel history to an endemic area].

Korean J Gastroenterol 2004 Dec;44(6):342-5

Department of Internal Medicine and WHO Collaborating Center on Viral Hepatitis, The Catholic University of Korea College of Medicine, Seoul 137-040, Korea.

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December 2004