Jin Billy Li

Jin Billy Li

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Jin Billy Li

Jin Billy Li

Publications by authors named "Jin Billy Li"

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ADAR1: A New Target for Immuno-oncology Therapy.

Mol Cell 2019 03;73(5):866-868

Stanford University Department of Genetics, Stanford, CA 94305, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2019.02.021DOI Listing
March 2019

Illuminating spatial A-to-I RNA editing signatures within the brain.

Proc Natl Acad Sci U S A 2019 02 18;116(6):2318-2327. Epub 2019 Jan 18.

The Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, 5290002 Ramat-Gan, Israel;

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http://dx.doi.org/10.1073/pnas.1811768116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6369821PMC
February 2019

Precise RNA editing by recruiting endogenous ADARs with antisense oligonucleotides.

Nat Biotechnol 2019 02 28;37(2):133-138. Epub 2019 Jan 28.

Interfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany.

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http://www.nature.com/articles/s41587-019-0013-6
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http://dx.doi.org/10.1038/s41587-019-0013-6DOI Listing
February 2019

The THO Complex Coordinates Transcripts for Synapse Development and Dopamine Neuron Survival.

Cell 2018 09 23;174(6):1436-1449.e20. Epub 2018 Aug 23.

Department of Biology, Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674183097
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http://dx.doi.org/10.1016/j.cell.2018.07.046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6542560PMC
September 2018

Efficient and precise editing of endogenous transcripts with SNAP-tagged ADARs.

Nat Methods 2018 07 2;15(7):535-538. Epub 2018 Jul 2.

Interfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany.

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http://dx.doi.org/10.1038/s41592-018-0017-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6322650PMC
July 2018

Updates to the RNA mapping database (RMDB), version 2.

Nucleic Acids Res 2018 01;46(D1):D375-D379

Department of Biochemistry, Stanford University School of Medicine, Stanford CA 94305, USA.

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http://dx.doi.org/10.1093/nar/gkx873DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753257PMC
January 2018

The evolution and adaptation of A-to-I RNA editing.

PLoS Genet 2017 Nov 28;13(11):e1007064. Epub 2017 Nov 28.

Stanford University, Department of Genetics, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1007064DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5705066PMC
November 2017

Rewriting the transcriptome: adenosine-to-inosine RNA editing by ADARs.

Genome Biol 2017 10 30;18(1):205. Epub 2017 Oct 30.

Department of Genetics, Stanford University, Stanford, CA, 94305, USA.

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http://genomebiology.biomedcentral.com/articles/10.1186/s130
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http://dx.doi.org/10.1186/s13059-017-1347-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5663115PMC
October 2017

DDX6 Represses Aberrant Activation of Interferon-Stimulated Genes.

Cell Rep 2017 07;20(4):819-831

Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2017.06.085DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5551412PMC
July 2017

XenMine: A genomic interaction tool for the Xenopus community.

Dev Biol 2017 06 4;426(2):155-164. Epub 2016 May 4.

Department of Genetics, Stanford University, Stanford CA 94305, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ydbio.2016.02.034DOI Listing
June 2017

Abnormalities in A-to-I RNA editing patterns in CNS injuries correlate with dynamic changes in cell type composition.

Sci Rep 2017 03 7;7:43421. Epub 2017 Mar 7.

Department of Developmental Biology and Cancer Research, Institute of Medical Research Israel-Canada (IMRIC), Faculty of Medicine, The Hebrew University, Jerusalem 91120, Israel.

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http://dx.doi.org/10.1038/srep43421DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5339895PMC
March 2017

Deficiency of microRNA expands cell fate potential in pluripotent stem cells.

Science 2017 02 12;355(6325). Epub 2017 Jan 12.

Division of Cellular and Developmental Biology, Department of Molecular and Cell Biology, University of California, Berkeley, CA 94705, USA.

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http://dx.doi.org/10.1126/science.aag1927DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6138252PMC
February 2017

Evolutionary analysis reveals regulatory and functional landscape of coding and non-coding RNA editing.

PLoS Genet 2017 02 6;13(2):e1006563. Epub 2017 Feb 6.

Department of Genetics, Stanford University, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1006563DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5319793PMC
February 2017

Adenosine-to-inosine RNA editing by ADAR1 is essential for normal murine erythropoiesis.

Exp Hematol 2016 10 1;44(10):947-63. Epub 2016 Jul 1.

St. Vincent's Institute of Medical Research, Fitzroy, Victoria, Australia; Department of Medicine, St. Vincent's Hospital, University of Melbourne, Fitzroy, Victoria, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.exphem.2016.06.250DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5035604PMC
October 2016

Identification of human RNA editing sites: A historical perspective.

Methods 2016 09 18;107:42-7. Epub 2016 May 18.

Department of Genetics, Stanford University, Stanford, CA 94305, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ymeth.2016.05.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5014717PMC
September 2016

Editing of Cellular Self-RNAs by Adenosine Deaminase ADAR1 Suppresses Innate Immune Stress Responses.

J Biol Chem 2016 Mar 27;291(12):6158-68. Epub 2016 Jan 27.

From the Department of Molecular, Cellular and Developmental Biology and the Biomolecular Sciences and Engineering Program, University of California, Santa Barbara, California 93106 and

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http://www.jbc.org/lookup/doi/10.1074/jbc.M115.709014
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http://dx.doi.org/10.1074/jbc.M115.709014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4813567PMC
March 2016

The Genomic Landscape and Clinical Relevance of A-to-I RNA Editing in Human Cancers.

Cancer Cell 2015 Oct 1;28(4):515-528. Epub 2015 Oct 1.

Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA; Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S15356108150030
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http://dx.doi.org/10.1016/j.ccell.2015.08.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4605878PMC
October 2015

RNA editing by ADAR1 prevents MDA5 sensing of endogenous dsRNA as nonself.

Science 2015 Sep 23;349(6252):1115-20. Epub 2015 Jul 23.

St. Vincent's Institute of Medical Research, Fitzroy, Victoria 3065, Australia. Department of Medicine, St. Vincent's Hospital, University of Melbourne, Fitzroy, Victoria 3065, Australia.

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http://dx.doi.org/10.1126/science.aac7049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5444807PMC
September 2015

Genetic mapping uncovers cis-regulatory landscape of RNA editing.

Nat Commun 2015 Sep 16;6:8194. Epub 2015 Sep 16.

Department of Genetics, Stanford University, Stanford, California 94305, USA.

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http://dx.doi.org/10.1038/ncomms9194DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4573499PMC
September 2015

Cis regulatory effects on A-to-I RNA editing in related Drosophila species.

Cell Rep 2015 May 23;11(5):697-703. Epub 2015 Apr 23.

Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2015.04.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4418222PMC
May 2015

Allelic expression of deleterious protein-coding variants across human tissues.

PLoS Genet 2014 May 1;10(5):e1004304. Epub 2014 May 1.

Department of Pathology, Stanford University School of Medicine, Stanford, California, United States of America; Department of Genetics, Stanford University School of Medicine, Stanford, California, United States of America; Department of Computer Science, Stanford University School of Medicine, Stanford, California, United States of America.

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http://dx.plos.org/10.1371/journal.pgen.1004304
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http://dx.doi.org/10.1371/journal.pgen.1004304DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4006732PMC
May 2014

RADAR: a rigorously annotated database of A-to-I RNA editing.

Nucleic Acids Res 2014 Jan 25;42(Database issue):D109-13. Epub 2013 Oct 25.

Department of Genetics, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1093/nar/gkt996DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965033PMC
January 2014

Quantifying RNA allelic ratios by microfluidic multiplex PCR and sequencing.

Nat Methods 2014 Jan 24;11(1):51-4. Epub 2013 Nov 24.

Department of Genetics, Stanford University, Stanford, California, USA.

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http://dx.doi.org/10.1038/nmeth.2736DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3877737PMC
January 2014

Deciphering the functions and regulation of brain-enriched A-to-I RNA editing.

Nat Neurosci 2013 Nov 28;16(11):1518-22. Epub 2013 Oct 28.

Department of Genetics, Stanford University, Stanford, California, USA.

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http://dx.doi.org/10.1038/nn.3539DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4015515PMC
November 2013

Reliable identification of genomic variants from RNA-seq data.

Am J Hum Genet 2013 Oct 26;93(4):641-51. Epub 2013 Sep 26.

Department of Genetics, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1016/j.ajhg.2013.08.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3791257PMC
October 2013

Lack of evidence for existence of noncanonical RNA editing.

Nat Biotechnol 2013 Jan;31(1):19-20

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http://dx.doi.org/10.1038/nbt.2472DOI Listing
January 2013

Activity-dependent A-to-I RNA editing in rat cortical neurons.

Genetics 2012 Sep 19;192(1):281-7. Epub 2012 Jun 19.

Broad Institute, Cambridge, Massachusetts 02142, USA.

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http://dx.doi.org/10.1534/genetics.112.141200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3430542PMC
September 2012

Accurate identification of human Alu and non-Alu RNA editing sites.

Nat Methods 2012 Jun 4;9(6):579-81. Epub 2012 Apr 4.

Department of Genetics, Stanford University, California, USA.

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http://dx.doi.org/10.1038/nmeth.1982DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3662811PMC
June 2012

Comment on "Widespread RNA and DNA sequence differences in the human transcriptome".

Science 2012 Mar;335(6074):1302; author reply 1302

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.

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http://dx.doi.org/10.1126/science.1210624DOI Listing
March 2012

Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips.

Nat Biotechnol 2010 Dec 28;28(12):1295-9. Epub 2010 Nov 28.

Wyss Institute for Biologically Inspired Engineering, Boston, Massachusetts, USA.

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http://www.nature.com/articles/nbt.1716
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http://dx.doi.org/10.1038/nbt.1716DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3139991PMC
December 2010

Sequence based identification of RNA editing sites.

RNA Biol 2010 Mar-Apr;7(2):248-52. Epub 2010 Mar 17.

Raymond and Beverly Sackler School of Physics and Astronomy, Tel-Aviv University, Tel Aviv, Israel.

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http://dx.doi.org/10.4161/rna.7.2.11565DOI Listing
September 2010

A robust approach to identifying tissue-specific gene expression regulatory variants using personalized human induced pluripotent stem cells.

PLoS Genet 2009 Nov 13;5(11):e1000718. Epub 2009 Nov 13.

Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1000718DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2766639PMC
November 2009

Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human.

Nat Methods 2009 Aug 20;6(8):613-8. Epub 2009 Jul 20.

Department of Bioengineering, University of California at San Diego, La Jolla, California, USA.

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http://dx.doi.org/10.1038/nmeth.1357DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2742772PMC
August 2009

Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing.

Science 2009 May;324(5931):1210-3

Department of Genetics, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, MA 02115, USA.

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http://dx.doi.org/10.1126/science.1170995DOI Listing
May 2009

Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells.

Nat Biotechnol 2009 Apr 29;27(4):361-8. Epub 2009 Mar 29.

Department of Genetics, Harvard Medical School, Cambridge, MA, USA.

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http://dx.doi.org/10.1038/nbt.1533DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3566772PMC
April 2009

Procom: a web-based tool to compare multiple eukaryotic proteomes.

Bioinformatics 2005 Apr 25;21(8):1693-4. Epub 2004 Nov 25.

Department of Genetics, Washington University School of Medicine, St. Louis, MO 63110, USA.

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http://dx.doi.org/10.1093/bioinformatics/bti161DOI Listing
April 2005

Analysis of Chlamydomonas reinhardtii genome structure using large-scale sequencing of regions on linkage groups I and III.

J Eukaryot Microbiol 2003 May-Jun;50(3):145-55

Department of Genetics, Washington University School of Medicine, St Louis, Missouri 63110, USA.

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http://dx.doi.org/10.1111/j.1550-7408.2003.tb00109.xDOI Listing
August 2003