Jim Leebens-Mack

Jim Leebens-Mack

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Jim Leebens-Mack

Jim Leebens-Mack

Publications by authors named "Jim Leebens-Mack"

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57Publications

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Distributed phenomics with the unPAK project reveals the effects of mutations.

Plant J 2019 Oct 9;100(1):199-211. Epub 2019 Jul 9.

Department of Biology, College of Charleston, 66 George Street, Charleston, SC, 29424, USA.

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http://dx.doi.org/10.1111/tpj.14427DOI Listing
October 2019

Shared expression of Crassulacean acid metabolism (CAM) genes predates the origin of CAM in the genus Yucca.

J Exp Bot 2019 Mar 14. Epub 2019 Mar 14.

Department of Plant Biology, University of Georgia, Athens, Georgia, USA.

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http://dx.doi.org/10.1093/jxb/erz105DOI Listing
March 2019

The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants.

Genome Biol 2017 05 1;18(1):65. Epub 2017 May 1.

Department of Genetics, University of Georgia, Athens, GA, 30602, USA.

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http://dx.doi.org/10.1186/s13059-017-1195-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5410703PMC
May 2017

A Century of Sex Determination in Flowering Plants.

J Hered 2017 01 14;108(1):69-77. Epub 2016 Nov 14.

From the Department of Plant Biology, University of Georgia, Athens, GA 30602 (Harkess and Leebens-Mack), Alex Harkess is now at the Donald Danforth Plant Science Center, St. Louis MO 63132.

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http://dx.doi.org/10.1093/jhered/esw060DOI Listing
January 2017

Timing of rapid diversification and convergent origins of active pollination within Agavoideae (Asparagaceae).

Am J Bot 2016 Oct 20;103(10):1717-1729. Epub 2016 Oct 20.

Department of Plant Biology, University of Georgia, 120 Carlton Street, Athens, Georgia 30602 USA.

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http://dx.doi.org/10.3732/ajb.1600198DOI Listing
October 2016

Gas exchange and leaf anatomy of a C3-CAM hybrid, Yucca gloriosa (Asparagaceae).

J Exp Bot 2016 Mar 29;67(5):1369-79. Epub 2015 Dec 29.

2502 Miller Plant Sciences, Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1093/jxb/erv536DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4762382PMC
March 2016

Plant Comparative and Functional Genomics.

Int J Genomics 2015 31;2015:924369. Epub 2015 Dec 31.

Department of Biological Sciences, Northern Illinois University, DeKalb, IL 60115, USA.

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http://dx.doi.org/10.1155/2015/924369DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4736190PMC
February 2016

Evolution of Asparagus L. (Asparagaceae): Out-of-South-Africa and multiple origins of sexual dimorphism.

Mol Phylogenet Evol 2015 Nov 14;92:25-44. Epub 2015 Jun 14.

Natural History Museum of Denmark, Sølvgade 83, Opg. S, K-1307 Copenhagen K, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.ympev.2015.06.002DOI Listing
November 2015

Sex-biased gene expression in dioecious garden asparagus (Asparagus officinalis).

New Phytol 2015 Aug 27;207(3):883-92. Epub 2015 Mar 27.

Department of Plant Biology, University of Georgia, Athens, GA, 30602, USA.

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http://dx.doi.org/10.1111/nph.13389DOI Listing
August 2015

Yucca aloifolia (Asparagaceae) opts out of an obligate pollination mutualism.

Am J Bot 2014 Dec 26;101(12):2062-7. Epub 2014 Nov 26.

Department of Plant Biology, University of Georgia, Athens, Georgia 30602 USA.

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http://dx.doi.org/10.3732/ajb.1400351DOI Listing
December 2014

Resolving ancient radiations: can complete plastid gene sets elucidate deep relationships among the tropical gingers (Zingiberales)?

Ann Bot 2014 Jan 25;113(1):119-33. Epub 2013 Nov 25.

Department of Biological Sciences, California State University, Los Angeles, 5151 State University Drive, Los Angeles, CA 90032, USA.

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https://academic.oup.com/aob/article-lookup/doi/10.1093/aob/
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http://dx.doi.org/10.1093/aob/mct264DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3864734PMC
January 2014

Phylogenetics and diversification of morning glories (tribe Ipomoeeae, Convolvulaceae) based on whole plastome sequences.

Am J Bot 2014 Jan 26;101(1):92-103. Epub 2013 Dec 26.

Plant Biology Department, University of Georgia, Athens, Georgia 30602 USA.

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http://doi.wiley.com/10.3732/ajb.1300207
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http://dx.doi.org/10.3732/ajb.1300207DOI Listing
January 2014

Single nucleotide polymorphism isolated from a novel EST dataset in garden asparagus (Asparagus officinalis L.).

Plant Sci 2013 Apr 16;203-204:115-23. Epub 2013 Jan 16.

Dipartimento di AGRARIA, Università Mediterranea di Reggio Calabria, Salita Melissari, 89124 Reggio Calabria (RC), Italy.

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http://dx.doi.org/10.1016/j.plantsci.2013.01.002DOI Listing
April 2013

Characterization of the basal angiosperm Aristolochia fimbriata: a potential experimental system for genetic studies.

BMC Plant Biol 2013 Jan 24;13:13. Epub 2013 Jan 24.

Department of Biology, Institute of Molecular Evolutionary Genetics, and the Huck Institutes of the Life Sciences, 201 Life Sciences Building, Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1186/1471-2229-13-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3621149PMC
January 2013

Homoploid hybrid origin of Yucca gloriosa: intersectional hybrid speciation in Yucca (Agavoideae, Asparagaceae).

Ecol Evol 2012 Sep 1;2(9):2213-22. Epub 2012 Aug 1.

Department of Plant Biology, University of Georgia Athens, Georgia, 30602.

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http://doi.wiley.com/10.1002/ece3.328
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http://dx.doi.org/10.1002/ece3.328DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3488672PMC
September 2012

The impact of multiple protein sequence alignment on phylogenetic estimation.

IEEE/ACM Trans Comput Biol Bioinform 2011 Jul-Aug;8(4):1108-19

Department of Pathology and Laboratory Medicine and Penn Center for Bioinformatics, 1424 Blockley Hall, 423 Guardian Drive, University of Pennsylvania, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1109/TCBB.2009.68DOI Listing
September 2011

Ancestral polyploidy in seed plants and angiosperms.

Nature 2011 May 10;473(7345):97-100. Epub 2011 Apr 10.

Intercollege Graduate Degree Program in Plant Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.

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http://dx.doi.org/10.1038/nature09916DOI Listing
May 2011

Plant reproductive genomics at the Plant and Animal Genome Conference.

Comp Funct Genomics 2005 ;6(3):159-69

Department of Biology and Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, PA 16802, USA.

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http://www.hindawi.com/journals/ijg/2005/592439/abs/
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http://dx.doi.org/10.1002/cfg.469DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447523PMC
June 2010

Evolution of plant MADS box transcription factors: evidence for shifts in selection associated with early angiosperm diversification and concerted gene duplications.

Mol Biol Evol 2009 Oct 3;26(10):2229-44. Epub 2009 Jul 3.

State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, the Chinese Academy of Sciences, Xiangshan, Beijing, People's Republic of China.

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https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
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http://dx.doi.org/10.1093/molbev/msp129DOI Listing
October 2009

Towards improved reconstruction of ancestral gene order in angiosperm phylogeny.

J Comput Biol 2009 Oct;16(10):1353-67

Department of Mathematics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario, Canada.

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http://dx.doi.org/10.1089/cmb.2009.0103DOI Listing
October 2009

The effect of massive gene loss following whole genome duplication on the algorithmic reconstruction of the ancestral populus diploid.

Comput Syst Bioinformatics Conf 2008 ;7:261-71

Department of Biology, University of Ottawa, Ottawa, Ontario KIN 6N5, Canada.

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August 2009

Comparison of next generation sequencing technologies for transcriptome characterization.

BMC Genomics 2009 Aug 1;10:347. Epub 2009 Aug 1.

Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1186/1471-2164-10-347DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2907694PMC
August 2009

Transcriptional signatures of ancient floral developmental genetics in avocado (Persea americana; Lauraceae).

Proc Natl Acad Sci U S A 2009 Jun 18;106(22):8929-34. Epub 2009 May 18.

Department of Biology and Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0811476106
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http://dx.doi.org/10.1073/pnas.0811476106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2683881PMC
June 2009

Parallel loss of plastid introns and their maturase in the genus Cuscuta.

PLoS One 2009 Jun 19;4(6):e5982. Epub 2009 Jun 19.

Department of Plant Biology, University of Georgia, Athens, Georgia, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0005982PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2694360PMC
June 2009

Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome.

Genome Res 2009 Feb 24;19(2):243-54. Epub 2008 Nov 24.

Department of Genetics, University of Georgia, Athens, Georgia 30602-7223, USA.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.083360.108
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http://dx.doi.org/10.1101/gr.083360.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2652206PMC
February 2009

PlantTribes: a gene and gene family resource for comparative genomics in plants.

Nucleic Acids Res 2008 Jan 10;36(Database issue):D970-6. Epub 2007 Dec 10.

Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1093/nar/gkm972DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238917PMC
January 2008

Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants.

Plant J 2007 Sep 17;51(6):991-1003. Epub 2007 Jul 17.

Department of Biology, Institute of Molecular Evolutionary Genetics, 403 Life Sciences Building, The Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1111/j.1365-313X.2007.03197.xDOI Listing
September 2007

The floral genome: an evolutionary history of gene duplication and shifting patterns of gene expression.

Trends Plant Sci 2007 Aug 19;12(8):358-67. Epub 2007 Jul 19.

Department of Botany and the Genetics Institute, University of Florida, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.1016/j.tplants.2007.06.012DOI Listing
August 2007

Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth.

Plant J 2007 Jun 23;50(5):873-85. Epub 2007 Apr 23.

State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, The Chinese Academy of Sciences, Beijing 100093, China.

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http://doi.wiley.com/10.1111/j.1365-313X.2007.03097.x
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http://dx.doi.org/10.1111/j.1365-313X.2007.03097.xDOI Listing
June 2007

Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.

Mol Biol Evol 2006 Feb 9;23(2):469-78. Epub 2005 Nov 9.

Department of Biology, Institute of Molecular Evolutionary Genetics, and Huck Institutes of the Life Sciences, The Pennsylvania State University, USA.

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http://dx.doi.org/10.1093/molbev/msj051DOI Listing
February 2006

Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach.

BMC Evol Biol 2006 Feb 9;6:13. Epub 2006 Feb 9.

Department of Biology, Institute of Molecular Evolutionary Genetics, Huck Institutes of Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA.

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http://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2148-6-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1421436PMC
February 2006

ChloroplastDB: the Chloroplast Genome Database.

Nucleic Acids Res 2006 Jan;34(Database issue):D692-6

Department of Biology and Institute of Molecular Evolutionary Genetics, The Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1093/nar/gkj055DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347418PMC
January 2006

Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone.

Mol Biol Evol 2005 Oct 8;22(10):1948-63. Epub 2005 Jun 8.

Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of Life Sciences, The Pennsylvania State University, PA, USA.

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http://dx.doi.org/10.1093/molbev/msi191DOI Listing
October 2005

Highly heterogeneous rates of evolution in the SKP1 gene family in plants and animals: functional and evolutionary implications.

Mol Biol Evol 2004 Jan 31;21(1):117-28. Epub 2003 Oct 31.

Laboratory of Systematic and Evolutionary Botany, Institute of Botany, The Chinese Academy of Sciences, Beijing, China.

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https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
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http://dx.doi.org/10.1093/molbev/msh001DOI Listing
January 2004

Power analysis of tests for loss of selective constraint in cave crayfish and nonphotosynthetic plant lineages.

Mol Biol Evol 2002 Aug;19(8):1292-302

Department of Biology, Colgate University, New York , USA.

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http://academic.oup.com/mbe/article/19/8/1292/997604
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http://dx.doi.org/10.1093/oxfordjournals.molbev.a004190DOI Listing
August 2002

HOST SPECIFICITY AND THE GENETIC STRUCTURE OF TWO YUCCA MOTH SPECIES IN A YUCCA HYBRID ZONE.

Evolution 1998 Oct;52(5):1376-1382

Department of Biology, Vanderbilt University, Box 1812-B, Nashville, Tennessee, 37235.

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http://doi.wiley.com/10.1111/j.1558-5646.1998.tb02019.x
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http://dx.doi.org/10.1111/j.1558-5646.1998.tb02019.xDOI Listing
October 1998