Jihyun F Kim

Jihyun F Kim

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Jihyun F Kim

Publications by authors named "Jihyun F Kim"

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Makes caterpillars floppy-like effector-containing MARTX toxins require host ADP-ribosylation factor (ARF) proteins for systemic pathogenicity.

Proc Natl Acad Sci U S A 2019 09 19;116(36):18031-18040. Epub 2019 Aug 19.

Infection and Immunity Research Laboratory, Metabolic Regulation Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 34141, Korea;

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http://dx.doi.org/10.1073/pnas.1905095116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6731672PMC
September 2019

Rhizosphere microbiome structure alters to enable wilt resistance in tomato.

Nat Biotechnol 2018 Oct 8. Epub 2018 Oct 8.

Department of Systems Biology, Division of Life Sciences, and Institute for Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.

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http://www.nature.com/doifinder/10.1038/nbt.4232
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http://dx.doi.org/10.1038/nbt.4232DOI Listing
October 2018

Tunable Control of an Escherichia coli Expression System for the Overproduction of Membrane Proteins by Titrated Expression of a Mutant lac Repressor.

ACS Synth Biol 2017 09 31;6(9):1766-1773. Epub 2017 May 31.

Department of Bioscience and Biotechnology, Konkuk University , Seoul 05029, Republic of Korea.

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http://dx.doi.org/10.1021/acssynbio.7b00102DOI Listing
September 2017

Genome characteristics of the proteorhodopsin-containing marine flavobacterium Polaribacter dokdonensis DSW-5.

J Microbiol 2017 Jul 22;55(7):561-567. Epub 2017 Apr 22.

Department of Systems Biology, Division of Life Sciences, Yonsei University, Seoul, 03722, Republic of Korea.

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http://dx.doi.org/10.1007/s12275-017-6427-2DOI Listing
July 2017

Complete genome sequence of the sand-sediment actinobacterium FR1436.

Stand Genomic Sci 2017 25;12:44. Epub 2017 Jul 25.

Department of Systems Biology and Division of Life Sciences, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul 03722 Republic of Korea.

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http://dx.doi.org/10.1186/s40793-017-0257-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5526307PMC
July 2017

Gut-Specific Delivery of T-Helper 17 Cells Reduces Obesity and Insulin Resistance in Mice.

Gastroenterology 2017 06 27;152(8):1998-2010. Epub 2017 Feb 27.

Academy of Immunology and Microbiology, Institute for Basic Science, Pohang, Republic of Korea; World Premier International Immunology Frontier Research Center, Osaka University, Suita, Japan. Electronic address:

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http://dx.doi.org/10.1053/j.gastro.2017.02.016DOI Listing
June 2017

Genomic and transcriptomic landscape of Escherichia coli BL21(DE3).

Nucleic Acids Res 2017 May;45(9):5285-5293

Department of Bioscience and Biotechnology, Konkuk University, Seoul 05029, Republic of Korea.

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http://dx.doi.org/10.1093/nar/gkx228DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435950PMC
May 2017

Genome Information of DSW-8 and Comparative Analysis with Other Genomes.

J Microbiol Biotechnol 2017 Mar;27(3):591-597

Department of Systems Biology and Division of Life Sciences, Yonsei University, Seoul 03722, Republic of Korea.

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http://dx.doi.org/10.4014/jmb.1608.08044DOI Listing
March 2017

Evolutionary architecture of the infant-adapted group of Bifidobacterium species associated with the probiotic function.

Syst Appl Microbiol 2016 Oct 29;39(7):429-439. Epub 2016 Jul 29.

Department of Systems Biology and Division of Life Sciences, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul 03722, Republic of Korea; Strategic Initiative for Microbiomes in Agriculture and Food, Yonsei University, Seoul 03722, Republic of Korea. Electronic address:

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http://dx.doi.org/10.1016/j.syapm.2016.07.004DOI Listing
October 2016

Genome Sequence of Porphyrobacter dokdonensis DSW-74T, Isolated from Seawater off Dokdo in the East Sea (Sea of Korea).

Genome Announc 2016 Sep 1;4(5). Epub 2016 Sep 1.

Department of Systems Biology and Division of Life Sciences, Yonsei University, Seodaemun-gu, Seoul, Republic of Korea Strategic Initiative for Microbiomes in Agriculture and Food, Yonsei University, Seodaemun-gu, Seoul, Republic of Korea

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http://dx.doi.org/10.1128/genomeA.00903-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5009977PMC
September 2016

Complete Genome Sequence of the Proteorhodopsin-Containing Marine Flavobacterium Dokdonia donghaensis DSW-1T, Isolated from Seawater off Dokdo in the East Sea (Sea of Korea).

Genome Announc 2016 Aug 4;4(4). Epub 2016 Aug 4.

Department of Systems Biology and Division of Life Sciences, Yonsei University, Seodaemun-gu, Seoul, Republic of Korea Strategic Initiative for Microbiomes in Agriculture and Food, Yonsei University, Seodaemun-gu, Seoul, Republic of Korea

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http://dx.doi.org/10.1128/genomeA.00804-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4974333PMC
August 2016

Crystal structure and functional characterization of a light-driven chloride pump having an NTQ motif.

Nat Commun 2016 08 24;7:12677. Epub 2016 Aug 24.

Department of Systems Biology and Division of Life Sciences, Yonsei University, 50 Yonsei-ro, Seoul 03722, Republic of Korea.

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http://dx.doi.org/10.1038/ncomms12677DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4999514PMC
August 2016

Genome sequence of the marine flavobacterium Croceitalea dokdonensis DOKDO 023 that contains proton- and sodium-pumping rhodopsins.

Mar Genomics 2016 Apr 26;26:1-3. Epub 2015 Nov 26.

Department of Systems Biology and Division of Life Sciences, Yonsei University, Seoul 120-749, Republic of Korea. Electronic address:

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http://dx.doi.org/10.1016/j.margen.2015.11.011DOI Listing
April 2016

Complete genome sequence of Streptomyces venezuelae ATCC 15439, a promising cell factory for production of secondary metabolites.

J Biotechnol 2016 Feb 21;219:57-8. Epub 2015 Dec 21.

Department of Chemistry and Nanoscience, Ewha Womans University, 52 Ewhayeodae-gil, Seodaemun-gu, Seoul 03760, Republic of Korea. Electronic address:

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http://dx.doi.org/10.1016/j.jbiotec.2015.12.028DOI Listing
February 2016

Genome sequence of Escherichia coli NCCP15653, a group D strain isolated from a diarrhea patient.

Gut Pathog 2016 23;8. Epub 2016 Feb 23.

Department of Systems Biology and Division of Life Sciences, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 120-749 Republic of Korea.

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http://dx.doi.org/10.1186/s13099-016-0084-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4765171PMC
February 2016

Does the intestinal microbial community of Korean Crohn's disease patients differ from that of western patients?

BMC Gastroenterol 2016 Feb 29;16:28. Epub 2016 Feb 29.

Department of Systems Biology and Division of Life Science, Yonsei University, Seoul, Korea.

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http://dx.doi.org/10.1186/s12876-016-0437-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770608PMC
February 2016

Genome sequence of Lysobacter dokdonensis DS-58(T), a gliding bacterium isolated from soil in Dokdo, Korea.

Stand Genomic Sci 2015 9;10:123. Epub 2015 Dec 9.

Department of Systems Biology and Division of Life Sciences, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul 120-749 Republic of Korea.

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http://dx.doi.org/10.1186/s40793-015-0116-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4673725PMC
December 2015

Complete genome sequence of Bifidobacterium longum KCTC 12200BP, a probiotic strain promoting the intestinal health.

J Biotechnol 2015 Nov 8;214:169-70. Epub 2015 Oct 8.

Department of Systems Biology and Division of Life Sciences, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul 120-749, Republic of Korea. Electronic address:

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http://dx.doi.org/10.1016/j.jbiotec.2015.09.039DOI Listing
November 2015

Complete genome sequence of the probiotic bacterium Bifidobacterium breve KCTC 12201BP isolated from a healthy infant.

J Biotechnol 2015 Nov 8;214:156-7. Epub 2015 Oct 8.

Department of Systems Biology and Division of Life Sciences, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul 120-749, Republic of Korea. Electronic address:

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http://dx.doi.org/10.1016/j.jbiotec.2015.09.035DOI Listing
November 2015

Comparative genomics and experimental evolution of Escherichia coli BL21(DE3) strains reveal the landscape of toxicity escape from membrane protein overproduction.

Sci Rep 2015 Nov 4;5:16076. Epub 2015 Nov 4.

Department of Systems Biology and Division of Life Sciences, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul 120-749, Republic of Korea.

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http://dx.doi.org/10.1038/srep16076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4632034PMC
November 2015

Growth retardation of Escherichia coli by artificial increase of intracellular ATP.

J Ind Microbiol Biotechnol 2015 Jun 3;42(6):915-24. Epub 2015 Apr 3.

Department of Biotechnology, The Catholic University of Korea, Bucheon, 420-743, Gyeonggi, Korea.

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http://dx.doi.org/10.1007/s10295-015-1609-6DOI Listing
June 2015

Genome information of Methylobacterium oryzae, a plant-probiotic methylotroph in the phyllosphere.

PLoS One 2014 11;9(9):e106704. Epub 2014 Sep 11.

Department of Systems Biology, and Division of Life Sciences, Yonsei University, Seodaemun-gu, Seoul, Republic of Korea; Korea Research Institute of Bioscience and Biotechnology, Yuseong-gu, Daejeon, Republic of Korea.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0106704PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4161386PMC
May 2015

Genome sequences of the Shiga-like toxin-producing Escherichia coli NCCP15655 and NCCP15656.

Gut Pathog 2015 12;7:13. Epub 2015 May 12.

Department of Systems Biology and Division of Life Sciences, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 120-749, Republic of Korea.

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http://dx.doi.org/10.1186/s13099-015-0060-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4436796PMC
May 2015

PAIDB v2.0: exploration and analysis of pathogenicity and resistance islands.

Nucleic Acids Res 2015 Jan 21;43(Database issue):D624-30. Epub 2014 Oct 21.

Biosystems and Bioengineering Program, Korea University of Science and Technology, Daejeon 305-350, Republic of Korea.

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http://dx.doi.org/10.1093/nar/gku985DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4384037PMC
January 2015

Differences in gastric mucosal microbiota profiling in patients with chronic gastritis, intestinal metaplasia, and gastric cancer using pyrosequencing methods.

Helicobacter 2014 Dec 23;19(6):407-16. Epub 2014 Jul 23.

Department of Internal Medicine, Hanyang University Guri Hospital, Gyeonggi-Do, Korea.

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http://dx.doi.org/10.1111/hel.12145DOI Listing
December 2014

Sulfitobacter geojensis sp. nov., Sulfitobacter noctilucae sp. nov., and Sulfitobacter noctilucicola sp. nov., isolated from coastal seawater.

Int J Syst Evol Microbiol 2014 Nov 13;64(Pt 11):3760-7. Epub 2014 Aug 13.

Department of Systems Biology and Division of Life Sciences, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul 120-749, Republic of Korea

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http://dx.doi.org/10.1099/ijs.0.065961-0DOI Listing
November 2014

An expansin from the marine bacterium Hahella chejuensis acts synergistically with xylanase and enhances xylan hydrolysis.

Bioresour Technol 2013 Dec 29;149:516-9. Epub 2013 Sep 29.

College of Life Sciences and Biotechnology, Korea University, Seoul 136 713, Republic of Korea.

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http://dx.doi.org/10.1016/j.biortech.2013.09.086DOI Listing
December 2013

Isolation and characterization of a novel agar-degrading marine bacterium, Gayadomonas joobiniege gen, nov, sp. nov., from the Southern Sea, Korea.

J Microbiol Biotechnol 2013 Nov;23(11):1509-18

Division of Biological Science and Bioinformatics, Myongji University, Yongin 449-728, Republic of Korea.

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http://dx.doi.org/10.4014/jmb.1308.08007DOI Listing
November 2013

Genomic makeup of the marine flavobacterium Nonlabens (Donghaeana) dokdonensis and identification of a novel class of rhodopsins.

Genome Biol Evol 2013 ;5(1):187-99

Systems and Synthetic Biology Research Center, Division of Biosystems Research, Korea Research Institute of Bioscience and Biotechnology, Yuseong-gu, Daejeon, Korea.

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http://dx.doi.org/10.1093/gbe/evs134DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3595038PMC
June 2013

Charting microbial phenotypes in multiplex nanoliter batch bioreactors.

Anal Chem 2013 Jun 24;85(12):5892-9. Epub 2013 May 24.

Materials Research and Education Center, Department of Mechanical Engineering, Auburn University, Auburn, Alabama 36849, USA.

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http://dx.doi.org/10.1021/ac400648zDOI Listing
June 2013

Genome sequence of the thermotolerant yeast Kluyveromyces marxianus var. marxianus KCTC 17555.

Eukaryot Cell 2012 Dec;11(12):1584-5

Systems and Synthetic Biology Research Center, Korea Research Institute of Bioscience and Biotechnology, Yuseong-gu, Daejeon, Republic of Korea.

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http://dx.doi.org/10.1128/EC.00260-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3536290PMC
December 2012

Construction and manipulation of a new Kaposi's sarcoma-associated herpesvirus bacterial artificial chromosome clone.

J Virol 2012 Sep 27;86(18):9708-20. Epub 2012 Jun 27.

Department of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, Los Angeles, California, USA.

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http://dx.doi.org/10.1128/JVI.01019-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3446615PMC
September 2012

Complete genome sequence of the probiotic bacterium Bifidobacterium bifidum strain BGN4.

J Bacteriol 2012 Sep;194(17):4757-8

Systems and Synthetic Biology Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Republic of Korea.

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http://jb.asm.org/content/194/17/4757.full.pdf
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http://jb.asm.org/cgi/doi/10.1128/JB.00988-12
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http://dx.doi.org/10.1128/JB.00988-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3415514PMC
September 2012

Algorithm for predicting functionally equivalent proteins from BLAST and HMMER searches.

J Microbiol Biotechnol 2012 Aug;22(8):1054-8

Systems and Synthetic Biology Research Center, Korea Research Institute of Bioscience and Biotechnology, 125 Gwahak-ro, Yuseong-gu, Daejeon 305-806, Korea.

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http://dx.doi.org/10.4014/jmb.1203.03050DOI Listing
August 2012

Complete genome sequence of the endophytic bacterium Burkholderia sp. strain KJ006.

J Bacteriol 2012 Aug;194(16):4432-3

Systems and Synthetic Biology Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea.

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http://jb.asm.org/cgi/doi/10.1128/JB.00821-12
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http://dx.doi.org/10.1128/JB.00821-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3416244PMC
August 2012

Comparative multi-omics systems analysis of Escherichia coli strains B and K-12.

Genome Biol 2012 May 25;13(5):R37. Epub 2012 May 25.

Systems and Synthetic Biology Research Center, Korea Research Institute of Bioscience and Biotechnology, Yuseong, Daejeon 305-806, Korea.

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http://dx.doi.org/10.1186/gb-2012-13-5-r37DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3446290PMC
May 2012

Genome sequence of an ammonia-oxidizing soil archaeon, "Candidatus Nitrosoarchaeum koreensis" MY1.

J Bacteriol 2011 Oct;193(19):5539-40

Industrial Biotechnology and Bioenergy Research Center, Korea Research Institute of Bioscience and Biotechnology, KRIBB, 125 Gwahak-ro, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://jb.asm.org/content/193/19/5539.full.pdf
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http://jb.asm.org/cgi/doi/10.1128/JB.05717-11
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http://dx.doi.org/10.1128/JB.05717-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187385PMC
October 2011

Draft genome sequence of the Paenibacillus polymyxa type strain (ATCC 842T), a plant growth-promoting bacterium.

J Bacteriol 2011 Sep 8;193(18):5026-7. Epub 2011 Jul 8.

Industrial Biotechnology and Bioenergy Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://jb.asm.org/cgi/doi/10.1128/JB.05447-11
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http://dx.doi.org/10.1128/JB.05447-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3165700PMC
September 2011

Complete genome sequence of the polycyclic aromatic hydrocarbon-degrading bacterium Alteromonas sp. strain SN2.

J Bacteriol 2011 Aug 24;193(16):4292-3. Epub 2011 Jun 24.

School of Biological Sciences, Chung-Ang University, Seoul 156-756, Republic of Korea.

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http://dx.doi.org/10.1128/JB.05252-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3147666PMC
August 2011

Genome-wide identification of the subcellular localization of the Escherichia coli B proteome using experimental and computational methods.

Proteomics 2011 Apr 17;11(7):1213-27. Epub 2011 Feb 17.

Metabolic and Biomolecular Engineering National Research Laboratory, Department of Chemical and Biomolecular Engineering (BK21 Program), BioProcess Engineering Research Center, and Institute for the BioCentury, KAIST, Yuseong-gu, Daejeon, Republic of Korea.

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http://doi.wiley.com/10.1002/pmic.201000191
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http://dx.doi.org/10.1002/pmic.201000191DOI Listing
April 2011

The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli.

BMC Genomics 2011 Jan 6;12. Epub 2011 Jan 6.

Australian Institute for Bioengineering and Nanotechnology, Cnr Cooper and College Rds, The University of Queensland, St Lucia, Queensland 4072 Australia.

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http://dx.doi.org/10.1186/1471-2164-12-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3032704PMC
January 2011

Genome sequence of the polymyxin-producing plant-probiotic rhizobacterium Paenibacillus polymyxa E681.

J Bacteriol 2010 Nov 17;192(22):6103-4. Epub 2010 Sep 17.

Industrial Biotechnology and Bioenergy Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong-gu, Daejeon, South Korea.

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http://dx.doi.org/10.1128/JB.00983-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2976442PMC
November 2010

Genome-wide screening and identification of factors affecting the biosynthesis of prodigiosin by Hahella chejuensis, using Escherichia coli as a surrogate host.

Appl Environ Microbiol 2010 Mar 28;76(5):1661-8. Epub 2009 Dec 28.

Industrial Biotechnology and Bioenergy Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 111 Gwahangno, Yuseong-gu, Daejeon 305-806, South Korea.

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http://dx.doi.org/10.1128/AEM.01468-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2832371PMC
March 2010

Secretory production of recombinant proteins in Escherichia coli.

Recent Pat Biotechnol 2010 Jan;4(1):23-9

Industrial Biotechnology and Bioenergy Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Republic of Korea.

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January 2010

Tracing ancestors and relatives of Escherichia coli B, and the derivation of B strains REL606 and BL21(DE3).

J Mol Biol 2009 Dec 15;394(4):634-43. Epub 2009 Sep 15.

CNRS-UMR 8030, GENOSCOPE (CEA), 2 rue Gaston Crémieux, CP 5706, 91000 Evry Cedex, France.

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http://openwetware.org/images/2/2c/BvsKStrains_JMB09.pdf
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http://linkinghub.elsevier.com/retrieve/pii/S002228360901139
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http://dx.doi.org/10.1016/j.jmb.2009.09.022DOI Listing
December 2009

Understanding the differences between genome sequences of Escherichia coli B strains REL606 and BL21(DE3) and comparison of the E. coli B and K-12 genomes.

J Mol Biol 2009 Dec 15;394(4):653-80. Epub 2009 Sep 15.

Biology Department, Brookhaven National Laboratory, PO Box 5000, Upton, NY 11973-5000, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S002228360901138
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http://dx.doi.org/10.1016/j.jmb.2009.09.021DOI Listing
December 2009

Genome evolution and adaptation in a long-term experiment with Escherichia coli.

Nature 2009 Oct 18;461(7268):1243-7. Epub 2009 Oct 18.

Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan 48824, USA.

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http://dx.doi.org/10.1038/nature08480DOI Listing
October 2009

Identification of a polymyxin synthetase gene cluster of Paenibacillus polymyxa and heterologous expression of the gene in Bacillus subtilis.

J Bacteriol 2009 May 20;191(10):3350-8. Epub 2009 Mar 20.

Industrial Biotechnology & Bioenergy Research Center, Korea Research Institute of Bioscience and Biotechnology, 111 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1128/JB.01728-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2687177PMC
May 2009

Evolution of ribosomal DNA-derived satellite repeat in tomato genome.

BMC Plant Biol 2009 Apr 8;9:42. Epub 2009 Apr 8.

Department of Plant Science and Plant Genomics and Breeding Institute, Seoul National University, Seoul, Korea.

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http://dx.doi.org/10.1186/1471-2229-9-42DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2679016PMC
April 2009

Genome sequence of the probiotic bacterium Bifidobacterium animalis subsp. lactis AD011.

J Bacteriol 2009 Jan 14;191(2):678-9. Epub 2008 Nov 14.

Korea Research Institute of Bioscience and Biotechnology, 111 Gwahangno, Yuseong, Daejeon 305-806, Korea.

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http://dx.doi.org/10.1128/JB.01515-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2620821PMC
January 2009

Red to red - the marine bacterium Hahella chejuensis and its product prodigiosin for mitigation of harmful algal blooms.

J Microbiol Biotechnol 2008 Oct;18(10):1621-9

Polar BioCenter, Korea Polar Research Institute (KOPRI), KORDI, Incheon 406-840, Korea.

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http://www.jmb.or.kr/submission/Journal/018/JMB018-10-01.pdf
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October 2008

Recent progress of microbial genome projects in Korea.

Biotechnol J 2008 May;3(5):601-11

Systems Microbiology Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Korea.

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http://dx.doi.org/10.1002/biot.200800016DOI Listing
May 2008

Complete genome sequence of Leuconostoc citreum KM20.

J Bacteriol 2008 Apr 15;190(8):3093-4. Epub 2008 Feb 15.

Systems Microbiology Research Center, KRIBB, 111 Gwahangno, Yuseong-gu, Daejeon 305-806, South Korea.

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http://dx.doi.org/10.1128/JB.01862-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2293239PMC
April 2008

CFGP: a web-based, comparative fungal genomics platform.

Nucleic Acids Res 2008 Jan 18;36(Database issue):D562-71. Epub 2007 Oct 18.

Fungal Bioinformatics Laboratory, Department of Agricultural Biotechnology, Center for Fungal Genetic Resource, Seoul National University, San 56-1, Sillim-9-dong, Seoul 151-921, Korea.

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http://dx.doi.org/10.1093/nar/gkm758DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238957PMC
January 2008

Identification and functional analysis of the fusaricidin biosynthetic gene of Paenibacillus polymyxa E681.

Biochem Biophys Res Commun 2008 Jan 31;365(1):89-95. Epub 2007 Oct 31.

Systems Microbiology Research Center, KRIBB, 111 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1016/j.bbrc.2007.10.147DOI Listing
January 2008

Ensemble learning of genetic networks from time-series expression data.

Bioinformatics 2007 Dec 31;23(23):3225-31. Epub 2007 Oct 31.

Korea Research Institute of Bioscience and Biotechnology (KRIBB), PO Box 115, Yuseong, Daejeon 305-600, Republic of Korea.

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http://dx.doi.org/10.1093/bioinformatics/btm514DOI Listing
December 2007

Interference of quorum sensing and virulence of the rice pathogen Burkholderia glumae by an engineered endophytic bacterium.

FEMS Microbiol Ecol 2007 Apr 22;60(1):14-23. Epub 2007 Feb 22.

Laboratory of Microbial Genomics, Systems Microbiology Research Center, KRIBB, Daejeon 305-806, Korea.

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http://dx.doi.org/10.1111/j.1574-6941.2007.00280.xDOI Listing
April 2007

Towards pathogenomics: a web-based resource for pathogenicity islands.

Nucleic Acids Res 2007 Jan 7;35(Database issue):D395-400. Epub 2006 Nov 7.

Systems Microbiology Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 52 Oun-dong, Yuseong, Daejeon 305-806, Republic of Korea.

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http://nar.oxfordjournals.org/content/early/2006/11/07/nar.g
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http://nar.oxfordjournals.org/lookup/doi/10.1093/nar/gkl790
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http://dx.doi.org/10.1093/nar/gkl790DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669727PMC
January 2007

Two bacterial entophytes eliciting both plant growth promotion and plant defense on pepper (Capsicum annuum L.).

J Microbiol Biotechnol 2007 Jan;17(1):96-103

Laboratory of Microbial Genomics, Systems Microbiology Research Center KRIBB, Daejeon 305-806, Korea.

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January 2007

PR genes of apple: identification and expression in response to elicitors and inoculation with Erwinia amylovora.

BMC Plant Biol 2006 Oct 9;6:23. Epub 2006 Oct 9.

Department of Plant Pathology, Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1186/1471-2229-6-23DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1613244PMC
October 2006

MELDB: a database for microbial esterases and lipases.

FEBS Lett 2006 May 21;580(11):2736-40. Epub 2006 Apr 21.

Genome Research Center, Korea Research Institute of Bioscience and Biotechnology, KRIBB, P.O. Box 115, Yuseong, Daejeon 305-600, Republic of Korea.

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http://dx.doi.org/10.1016/j.febslet.2006.04.034DOI Listing
May 2006

Apple proteins that interact with DspA/E, a pathogenicity effector of Erwinia amylovora, the fire blight pathogen.

Mol Plant Microbe Interact 2006 Jan;19(1):53-61

Department of Plant Pathology, Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1094/MPMI-19-0053DOI Listing
January 2006

Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agent.

Nucleic Acids Res 2005 13;33(22):7066-73. Epub 2005 Dec 13.

Genome Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), PO Box 115, Yuseong, Daejeon 305-600, Republic of Korea.

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http://dx.doi.org/10.1093/nar/gki1016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1312362PMC
December 2005

A computational approach for identifying pathogenicity islands in prokaryotic genomes.

BMC Bioinformatics 2005 Jul 21;6:184. Epub 2005 Jul 21.

Genome Research Center, Korea Research Institute of Bioscience and Biotechnology, 52 Oun-dong, Yuseong, Daejeon 305-333, Korea.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-6-184DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1188055PMC
July 2005

The Hrp pathogenicity island of Erwinia amylovora and identification of three novel genes required for systemic infectiondouble dagger.

Mol Plant Pathol 2005 Mar;6(2):125-38

Department of Plant Pathology, Cornell University, Ithaca, NY 14853, USA.

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http://doi.wiley.com/10.1111/j.1364-3703.2005.00269.x
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http://dx.doi.org/10.1111/j.1364-3703.2005.00269.xDOI Listing
March 2005