Jieming Chen

Jieming Chen

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Jieming Chen

Jieming Chen

Publications by authors named "Jieming Chen"

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High throughput screening of small immune peptides and antimicrobial peptides from the Fish-T1K database.

Genomics 2019 05 23;111(3):215-221. Epub 2018 Nov 23.

BGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China; Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI Academy of Marine Sciences, BGI Marine, BGI, Shenzhen 518083, China; Laboratory of Aquatic Genomics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060, China. Electronic address:

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http://dx.doi.org/10.1016/j.ygeno.2018.11.023DOI Listing
May 2019

Transcriptomic evidence of adaptive tolerance to high environmental ammonia in mudskippers.

Genomics 2018 11 24;110(6):404-413. Epub 2018 Sep 24.

Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI Academy of Marine Sciences, BGI Marine, BGI, Shenzhen, China; BGI Zhenjiang Institute of Hydrobiology, Zhenjiang, China; Laboratory of Aquatic Genomics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China. Electronic address:

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http://dx.doi.org/10.1016/j.ygeno.2018.09.001DOI Listing
November 2018

Differential diagnostic roles of the serum CA19-9, total bilirubin (TBIL) and the ratio of CA19-9 to TBIL for benign and malignant.

J Cancer 2018 19;9(10):1804-1812. Epub 2018 Apr 19.

Department of General Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College,100730.

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http://dx.doi.org/10.7150/jca.25093DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5968769PMC
April 2018

Mudskippers and Their Genetic Adaptations to an Amphibious Lifestyle.

Animals (Basel) 2018 Feb 7;8(2). Epub 2018 Feb 7.

Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI Academy of Marine Sciences, BGI Marine, BGI, Shenzhen 518083, China.

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http://dx.doi.org/10.3390/ani8020024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5836032PMC
February 2018

Corrigendum: Novel Non-Histocompatibility Antigen Mismatched Variants Improve the Ability to Predict Antibody-Mediated Rejection Risk in Kidney Transplant.

Front Immunol 2018 31;9:107. Epub 2018 Jan 31.

Division of Transplant Surgery, Department of Surgery, University of California, San Francisco (UCSF), San Francisco, CA, United States.

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http://dx.doi.org/10.3389/fimmu.2018.00107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5797733PMC
January 2018

Novel Non-Histocompatibility Antigen Mismatched Variants Improve the Ability to Predict Antibody-Mediated Rejection Risk in Kidney Transplant.

Front Immunol 2017 5;8:1687. Epub 2017 Dec 5.

Division of Transplant Surgery, Department of Surgery, University of California, San Francisco (UCSF), San Francisco, CA, United States.

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http://dx.doi.org/10.3389/fimmu.2017.01687DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5723302PMC
December 2017

Draft genome of the lined seahorse, Hippocampus erectus.

Gigascience 2017 06;6(6):1-6

Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI Academy of Marine Sciences, BGI Fisheries, BGI, Shenzhen, Guangdong 518083, China.

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https://academic.oup.com/gigascience/article/doi/10.1093/gig
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http://dx.doi.org/10.1093/gigascience/gix030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5459928PMC
June 2017

Intensification: A Resource for Amplifying Population-Genetic Signals with Protein Repeats.

J Mol Biol 2017 02 7;429(3):435-445. Epub 2016 Dec 7.

Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA; Integrated Graduate Program in Physical and Engineering Biology, Yale University, New Haven, CT 06520, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA; Department of Computer Science, Yale University, New Haven, CT 06520, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jmb.2016.12.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5420328PMC
February 2017

High-throughput identification of novel conotoxins from the Chinese tubular cone snail (Conus betulinus) by multi-transcriptome sequencing.

Gigascience 2016 14;5:17. Epub 2016 Apr 14.

BGI-Shenzhen, Shenzhen, 518083 China ; Shenzhen Key Laboratory of Marine Genomics, Guangdong Provincial Key Laboratory of Molecular Breeding in Marine Economic Animals, State Key Laboratory of Agricultural Genomics, Shenzhen, 518083 China ; BGI-Zhenjiang Institute of Hydrobiology, Zhenjiang, 212000 China.

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http://dx.doi.org/10.1186/s13742-016-0122-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4832519PMC
October 2016

Identifying Allosteric Hotspots with Dynamics: Application to Inter- and Intra-species Conservation.

Structure 2016 05 7;24(5):826-837. Epub 2016 Apr 7.

Program in Computational Biology and Bioinformatics, Yale University, 260/266 Whitney Avenue, PO Box 208114, New Haven, CT 06520, USA; Department of Molecular Biophysics and Biochemistry, Yale University, 260/266 Whitney Avenue, PO Box 208114, New Haven, CT 06520, USA; Department of Computer Science, Yale University, 260/266 Whitney Avenue, PO Box 208114, New Haven, CT 06520, USA. Electronic address:

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http://www.cell.com/structure/pdf/S0969-2126(16)00086-1.pdf
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http://dx.doi.org/10.1016/j.str.2016.03.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4883016PMC
May 2016

A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals.

Nat Commun 2016 Apr 18;7:11101. Epub 2016 Apr 18.

Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06520, USA.

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http://dx.doi.org/10.1038/ncomms11101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4837449PMC
April 2016

Reads meet rotamers: structural biology in the age of deep sequencing.

Curr Opin Struct Biol 2015 Dec 1;35:125-34. Epub 2015 Dec 1.

Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, United States; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, United States. Electronic address:

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http://dx.doi.org/10.1016/j.sbi.2015.11.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4751031PMC
December 2015

An integrated map of structural variation in 2,504 human genomes.

Nature 2015 Oct;526(7571):75-81

European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Meyerhofstr. 1, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1038/nature15394DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617611PMC
October 2015

Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes.

Nat Commun 2014 Dec 2;5:5594. Epub 2014 Dec 2.

1] Shenzhen Key Lab of Marine Genomics, State Key Laboratory of Agricultural Genomics, Shenzhen 518083, China [2] BGI-Shenzhen, Shenzhen 518083, China [3] Shenzhen BGI Fisheries Sci &Tech Co. Ltd, Shenzhen 518083, China [4] Center for Fish Genomics, BGI-Wuhan, Wuhan 430075, China.

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http://dx.doi.org/10.1038/ncomms6594DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4268706PMC
December 2014

Interpretation of genomic variants using a unified biological network approach.

PLoS Comput Biol 2013 7;9(3):e1002886. Epub 2013 Mar 7.

Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1002886DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3591262PMC
November 2013

All repeats are not equal: a module-based approach to guide repeat protein design.

J Mol Biol 2013 May 19;425(10):1826-1838. Epub 2013 Feb 19.

Integrated Graduate Program in Physical and Engineering Biology, Yale University, 266 Whitney Avenue, New Haven, CT 06511, USA.

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http://dx.doi.org/10.1016/j.jmb.2013.02.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928981PMC
May 2013

Protein-protein interactions: general trends in the relationship between binding affinity and interfacial buried surface area.

Protein Sci 2013 Apr 26;22(4):510-5. Epub 2013 Feb 26.

Integrated Graduate Program in Physical and Engineering Biology, Yale University, New Haven, Connecticut 06520, USA.

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http://dx.doi.org/10.1002/pro.2230DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3610057PMC
April 2013

On sports and genes.

Recent Pat DNA Gene Seq 2012 Dec;6(3):180-8

Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA.

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December 2012

Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage.

Authors:
Katherine Amps Peter W Andrews George Anyfantis Lyle Armstrong Stuart Avery Hossein Baharvand Julie Baker Duncan Baker Maria B Munoz Stephen Beil Nissim Benvenisty Dalit Ben-Yosef Juan-Carlos Biancotti Alexis Bosman Romulo Martin Brena Daniel Brison Gunilla Caisander María V Camarasa Jieming Chen Eric Chiao Young Min Choi Andre B H Choo Daniel Collins Alan Colman Jeremy M Crook George Q Daley Anne Dalton Paul A De Sousa Chris Denning Janet Downie Petr Dvorak Karen D Montgomery Anis Feki Angela Ford Victoria Fox Ana M Fraga Tzvia Frumkin Lin Ge Paul J Gokhale Tamar Golan-Lev Hamid Gourabi Michal Gropp Guangxiu Lu Ales Hampl Katie Harron Lyn Healy Wishva Herath Frida Holm Outi Hovatta Johan Hyllner Maneesha S Inamdar Astrid Kresentia Irwanto Tetsuya Ishii Marisa Jaconi Ying Jin Susan Kimber Sergey Kiselev Barbara B Knowles Oded Kopper Valeri Kukharenko Anver Kuliev Maria A Lagarkova Peter W Laird Majlinda Lako Andrew L Laslett Neta Lavon Dong Ryul Lee Jeoung Eun Lee Chunliang Li Linda S Lim Tenneille E Ludwig Yu Ma Edna Maltby Ileana Mateizel Yoav Mayshar Maria Mileikovsky Stephen L Minger Takamichi Miyazaki Shin Yong Moon Harry Moore Christine Mummery Andras Nagy Norio Nakatsuji Kavita Narwani Steve K W Oh Sun Kyung Oh Cia Olson Timo Otonkoski Fei Pan In-Hyun Park Steve Pells Martin F Pera Lygia V Pereira Ouyang Qi Grace Selva Raj Benjamin Reubinoff Alan Robins Paul Robson Janet Rossant Ghasem H Salekdeh Thomas C Schulz Karen Sermon Jameelah Sheik Mohamed Hui Shen Eric Sherrer Kuldip Sidhu Shirani Sivarajah Heli Skottman Claudia Spits Glyn N Stacey Raimund Strehl Nick Strelchenko Hirofumi Suemori Bowen Sun Riitta Suuronen Kazutoshi Takahashi Timo Tuuri Parvathy Venu Yuri Verlinsky Dorien Ward-van Oostwaard Daniel J Weisenberger Yue Wu Shinya Yamanaka Lorraine Young Qi Zhou

Nat Biotechnol 2011 Nov 27;29(12):1132-44. Epub 2011 Nov 27.

Centre for Stem Cell Biology, Department of Biomedical Science, The University of Sheffield, Sheffield, UK.

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http://www.nature.com/articles/nbt.2051
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http://dx.doi.org/10.1038/nbt.2051DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3454460PMC
November 2011

Systems biology: new institute and applications.

Authors:
Jieming Chen

Yale J Biol Med 2011 Mar;84(1):59-61

Graduate School of Arts & Sciences, Yale University, New Haven, Connecticut, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3064249PMC
March 2011

Mapping human genetic diversity in Asia.

Science 2009 Dec;326(5959):1541-5

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http://dx.doi.org/10.1126/science.1177074DOI Listing
December 2009

Singapore Genome Variation Project: a haplotype map of three Southeast Asian populations.

Genome Res 2009 Nov 21;19(11):2154-62. Epub 2009 Aug 21.

Centre for Molecular Epidemiology, National University of Singapore, Singapore 117597.

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http://dx.doi.org/10.1101/gr.095000.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2775604PMC
November 2009