Jianming Xie

Jianming Xie

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Jianming Xie

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Downregulation of TNF-/TNF-R1 Signals by AT-Lipoxin A4 May Be a Significant Mechanism of Attenuation in SAP-Associated Lung Injury.

Mediators Inflamm 2019 11;2019:9019404. Epub 2019 Apr 11.

Department of Surgery, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China.

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https://www.hindawi.com/journals/mi/2019/9019404/
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http://dx.doi.org/10.1155/2019/9019404DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6487108PMC
December 2019

DNMHMM: An approach to identify the differential nucleosome regions in multiple cell types based on a Hidden Markov Model.

Biosystems 2019 Nov 18;185:104033. Epub 2019 Sep 18.

State Key Laboratory of Bioelectronics, School of Biological Science & Medical Engineering, Southeast University, Nanjing 210096, China. Electronic address:

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http://dx.doi.org/10.1016/j.biosystems.2019.104033DOI Listing
November 2019

Quantitative Trait Module-Based Genetic Analysis of Alzheimer's Disease.

Int J Mol Sci 2019 Nov 25;20(23). Epub 2019 Nov 25.

State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China.

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http://dx.doi.org/10.3390/ijms20235912DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6928939PMC
November 2019

Proteomic Investigation of -Nitrosylated Proteins During NO-Induced Adventitious Rooting of Cucumber.

Int J Mol Sci 2019 Oct 28;20(21). Epub 2019 Oct 28.

College of Horticulture, Gansu Agricultural University, Lanzhou 730070, China.

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http://dx.doi.org/10.3390/ijms20215363DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6862188PMC
October 2019

CAR T cells targeting BAFF-R can overcome CD19 antigen loss in B cell malignancies.

Sci Transl Med 2019 Sep;11(511)

Toni Stephenson Lymphoma Center, Department of Hematology and Hematopoietic Cell Transplantation, Beckman Research Institute of City of Hope, Duarte, CA 91010, USA.

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http://dx.doi.org/10.1126/scitranslmed.aaw9414DOI Listing
September 2019

Identification and expression profiling analysis of NBS-LRR genes involved in f.sp. resistance in cabbage.

3 Biotech 2019 May 4;9(5):202. Epub 2019 May 4.

2Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture, Beijing, 100097 People's Republic of China.

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http://dx.doi.org/10.1007/s13205-019-1714-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6500516PMC
May 2019

The Involvement of Ethylene in Calcium-Induced Adventitious Root Formation in Cucumber under Salt Stress.

Int J Mol Sci 2019 Feb 28;20(5). Epub 2019 Feb 28.

College of Horticulture, Gansu Agricultural University, Lanzhou 730070, China.

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http://dx.doi.org/10.3390/ijms20051047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6429442PMC
February 2019

[Expression of transcription factor SOX12 in lung adenocarcinoma and its clinical significance].

Nan Fang Yi Ke Da Xue Xue Bao 2019 02;39(2):186-191

Department of Oncology, Nanfang Hospital, Southern Medical University, Guangzhou 510515, China.

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http://dx.doi.org/10.12122/j.issn.1673-4254.2019.09.10DOI Listing
February 2019

Reversed-Phase High-Performance Liquid Chromatography for the Quantification and Optimization for Extracting 10 Kinds of Carotenoids in Pepper (Capsicum annuum L.) Leaves.

J Agric Food Chem 2017 Sep 8;65(38):8475-8488. Epub 2017 Sep 8.

College of Horticulture, Gansu Agricultural University , Yingmen Village, Anning District, Lanzhou, Gansu 730070, People's Republic of China.

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http://pubs.acs.org/doi/abs/10.1021/acs.jafc.7b02440
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http://dx.doi.org/10.1021/acs.jafc.7b02440DOI Listing
September 2017

MACC1 mediates chemotherapy sensitivity of 5-FU and cisplatin via regulating MCT1 expression in gastric cancer.

Biochem Biophys Res Commun 2017 04 21;485(3):665-671. Epub 2017 Feb 21.

Department of Oncology, Nanfang Hospital, Southern Medical University, Guangzhou, China. Electronic address:

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http://dx.doi.org/10.1016/j.bbrc.2017.02.096DOI Listing
April 2017

An approach of identifying differential nucleosome regions in multiple samples.

BMC Genomics 2017 02 7;18(1):135. Epub 2017 Feb 7.

State Key Laboratory of Bioelectronics, School of Biological Science & Medical Engineering, Southeast University, Nanjing, 210096, China.

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http://dx.doi.org/10.1186/s12864-017-3541-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5297132PMC
February 2017

Transcriptome Analysis of Pepper (Capsicum annuum) Revealed a Role of 24-Epibrassinolide in Response to Chilling.

Front Plant Sci 2016 29;7:1281. Epub 2016 Aug 29.

Department of Facility Horticulture Science, College of Horticulture, Gansu Agricultural University Lanzhou, China.

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http://dx.doi.org/10.3389/fpls.2016.01281DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5002408PMC
September 2016

Regional arterial infusion with lipoxin A4 attenuates experimental severe acute pancreatitis.

PLoS One 2014 29;9(9):e108525. Epub 2014 Sep 29.

Department of Surgery, The First Affiliated Hospital, Wenzhou Medical University, Wenzhou, Zhejiang Province, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0108525PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4180750PMC
November 2015

Distinct Roles of Cytoskeletal Components in Immunological Synapse Formation and Directed Secretion.

J Immunol 2015 Nov 21;195(9):4117-25. Epub 2015 Sep 21.

Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA 94305; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305; and

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http://dx.doi.org/10.4049/jimmunol.1402175DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4610857PMC
November 2015

Solanine induces mitochondria-mediated apoptosis in human pancreatic cancer cells.

Biomed Res Int 2014 11;2014:805926. Epub 2014 May 11.

Department of Surgery, First Affiliated Hospital of Wenzhou Medical University, Wenzhou 325000, China ; Wenzhou Key Laboratory of Surgery, Department of Surgery, First Affiliated Hospital of Wenzhou Medical University, Wenzhou 325000, China.

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http://dx.doi.org/10.1155/2014/805926DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4037623PMC
February 2015

Lipoxin A4 attenuation of endothelial inflammation response mimicking pancreatitis-induced lung injury.

Exp Biol Med (Maywood) 2013 Dec 2;238(12):1388-95. Epub 2013 Sep 2.

Department of Surgery, The First Affiliated Hospital, Wenzhou Medical College, Wenzhou 325000, Zhejiang Province, China.

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http://dx.doi.org/10.1177/1535370213502611DOI Listing
December 2013

Quantitative analysis reveals increased histone modifications and a broad nucleosome-free region bound by histone acetylases in highly expressed genes in human CD4+ T cells.

Genomics 2013 Feb 27;101(2):113-9. Epub 2012 Nov 27.

State Key Laboratory of Bioelectronics, Southeast University, Nanjing 210096, China.

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http://dx.doi.org/10.1016/j.ygeno.2012.11.007DOI Listing
February 2013

How the immune system talks to itself: the varied role of synapses.

Immunol Rev 2013 Jan;251(1):65-79

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305-5323, USA.

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http://dx.doi.org/10.1111/imr.12017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3645447PMC
January 2013

Prediction of autism susceptibility genes based on association rules.

J Neurosci Res 2012 Jun 16;90(6):1119-25. Epub 2012 Feb 16.

State Key Laboratory of Bioelectronics, Department of Biological Science and Medical Engineering, Southeast University, Nanjing, People's Republic of China.

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http://dx.doi.org/10.1002/jnr.23015DOI Listing
June 2012

Photocrosslinkable pMHC monomers stain T cells specifically and cause ligand-bound TCRs to be 'preferentially' transported to the cSMAC.

Nat Immunol 2012 Jun 3;13(7):674-80. Epub 2012 Jun 3.

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, USA.

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http://dx.doi.org/10.1038/ni.2344DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3645478PMC
June 2012

Prediction of RNA-binding residues in proteins from primary sequence using an enriched random forest model with a novel hybrid feature.

Proteins 2011 Apr 25;79(4):1230-9. Epub 2011 Jan 25.

State Key Laboratory of Bioelectronics, Southeast University, Nanjing 210096, People's Republic of China.

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http://dx.doi.org/10.1002/prot.22958DOI Listing
April 2011

MicroRNA genes derived from repetitive elements and expanded by segmental duplication events in mammalian genomes.

PLoS One 2011 Mar 16;6(3):e17666. Epub 2011 Mar 16.

State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0017666PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3059204PMC
March 2011

Origin and evolution of a placental-specific microRNA family in the human genome.

BMC Evol Biol 2010 Nov 10;10:346. Epub 2010 Nov 10.

State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, China.

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http://dx.doi.org/10.1186/1471-2148-10-346DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2996404PMC
November 2010

Gene mutations in epidermal growth factor receptor signaling network and their association with survival in Chinese patients with metastatic colorectal cancers.

Anat Rec (Hoboken) 2010 Sep;293(9):1506-11

Department of Oncology, Nanfang Hospital, Southern Medical University, Guangzhou, China.

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http://dx.doi.org/10.1002/ar.21202DOI Listing
September 2010

An endogenous positively selecting peptide enhances mature T cell responses and becomes an autoantigen in the absence of microRNA miR-181a.

Nat Immunol 2009 Nov 4;10(11):1162-9. Epub 2009 Oct 4.

The Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, California, USA.

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http://dx.doi.org/10.1038/ni.1797DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3762483PMC
November 2009

Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia.

BMC Bioinformatics 2009 Sep 17;10 Suppl 9:S6. Epub 2009 Sep 17.

Center for Biomedical Informatics and Section of Genetic Medicine, Department of Medicine, The University of Chicago, Chicago, IL 60637, USA.

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http://dx.doi.org/10.1186/1471-2105-10-S9-S6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2745693PMC
September 2009

Characteristics of nucleosome core DNA and their applications in predicting nucleosome positions.

Biophys J 2008 Jun 7;94(12):4597-604. Epub 2008 Mar 7.

State Key Laboratory of Bioelectronics, Southeast University, Nanjing 210096, China.

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http://dx.doi.org/10.1529/biophysj.107.117028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2397361PMC
June 2008

A genetically encoded bidentate, metal-binding amino acid.

Angew Chem Int Ed Engl 2007 ;46(48):9239-42

Department of Chemistry and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 N. Torrey Pines Rd, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1002/anie.200703397DOI Listing
February 2008

Site-specific insertion of 3-aminotyrosine into subunit alpha2 of E. coli ribonucleotide reductase: direct evidence for involvement of Y730 and Y731 in radical propagation.

J Am Chem Soc 2007 Dec 9;129(48):15060-71. Epub 2007 Nov 9.

Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139-4307, USA.

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http://pubs.acs.org/doi/abs/10.1021/ja076043y
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http://dx.doi.org/10.1021/ja076043yDOI Listing
December 2007

A genetically encoded metabolically stable analogue of phosphotyrosine in Escherichia coli.

ACS Chem Biol 2007 Jul 9;2(7):474-8. Epub 2007 Jul 9.

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http://dx.doi.org/10.1021/cb700083wDOI Listing
July 2007

[Construction and application of learning science related phenotype ontology].

Sheng Wu Yi Xue Gong Cheng Xue Za Zhi 2007 Feb;24(1):145-8

Key Laboratory of Molecular and Biomalecular Electronics of Ministry of Education, Southeast University, Nanjing 210096, China.

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February 2007

A genetically encoded infrared probe.

J Am Chem Soc 2006 Nov;128(43):13984-5

Department of Chemistry and the Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1021/ja0636690DOI Listing
November 2006

A chemical toolkit for proteins--an expanded genetic code.

Nat Rev Mol Cell Biol 2006 10 23;7(10):775-82. Epub 2006 Aug 23.

Department of Chemistry and Skaggs Institute for Chemical Biology, the Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, USA.

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http://dx.doi.org/10.1038/nrm2005DOI Listing
October 2006

Genetic introduction of a diketone-containing amino acid into proteins.

Bioorg Med Chem Lett 2006 Oct 24;16(20):5356-9. Epub 2006 Aug 24.

Department of Chemistry and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1016/j.bmcl.2006.07.094DOI Listing
October 2006

Expanding the genetic code.

Annu Rev Biophys Biomol Struct 2006 ;35:225-49

The Jack H. Skirball Center for Chemical Biology & Proteomics, The Salk Institute for Biological Studies, La Jolla, California 92037, USA.

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http://dx.doi.org/10.1146/annurev.biophys.35.101105.121507DOI Listing
July 2006

A genetically encoded fluorescent amino acid.

J Am Chem Soc 2006 Jul;128(27):8738-9

Department of Chemistry and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, USA.

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http://dx.doi.org/10.1021/ja062666kDOI Listing
July 2006

A genetically encoded photocaged tyrosine.

Angew Chem Int Ed Engl 2006 Apr;45(17):2728-31

Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, USA.

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http://dx.doi.org/10.1002/anie.200600264DOI Listing
April 2006

The incorporation of a photoisomerizable amino acid into proteins in E. coli.

J Am Chem Soc 2006 Jan;128(2):388-9

Department of Chemistry, The Scripps Research Institute, La Jolla, California 92037, USA.

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http://dx.doi.org/10.1021/ja055467uDOI Listing
January 2006

Adding amino acids to the genetic repertoire.

Curr Opin Chem Biol 2005 Dec 2;9(6):548-54. Epub 2005 Nov 2.

Department of Chemistry and Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1016/j.cbpa.2005.10.011DOI Listing
December 2005

[Evaluation on survival in locally advanced non-small cell lung cancer (NSCLC) for multimodality treatment with or without operation].

Zhongguo Fei Ai Za Zhi 2005 Dec;8(6):535-7

Department of Oncology, Nanfang Hospital, Nanfang Medical University, Guangzhou, Guangdong 510515, P.R.China.

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http://www.lungca.org/index.php?journal=01&page=article&
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http://dx.doi.org/10.3779/j.issn.1009-3419.2005.06.11DOI Listing
December 2005

An expanding genetic code.

Methods 2005 Jul;36(3):227-38

Department of Chemistry and Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1016/j.ymeth.2005.04.010DOI Listing
July 2005

Atomic force microscopy studies on DNA structural changes induced by vincristine sulfate and aspirin.

Microsc Microanal 2004 Apr;10(2):286-90

Laboratory of Molecular and Biomolecular Electronics, Southeast University, Nanjing 210096, P.R. China.

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http://dx.doi.org/10.1017/S1431927604040127DOI Listing
April 2004

Unnatural amino acid mutagenesis of green fluorescent protein.

J Org Chem 2003 Jan;68(1):174-6

Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, USA.

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http://pubs.acs.org/doi/abs/10.1021/jo026570u
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http://dx.doi.org/10.1021/jo026570uDOI Listing
January 2003