Jian-Bing Fan

Jian-Bing Fan

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Jian-Bing Fan

Publications by authors named "Jian-Bing Fan"

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100Publications

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Non-invasive diagnosis of early-stage lung cancer using high-throughput targeted DNA methylation sequencing of circulating tumor DNA (ctDNA).

Theranostics 2019 6;9(7):2056-2070. Epub 2019 Apr 6.

First Affiliated Hospital of Guangzhou Department of Thoracic Surgery/Oncology, the First Affiliated Hospital of Guangzhou Medical University; Guangzhou Institute of Respiratory Disease & Health; China State Key Laboratory and National Clinical Research Center for Respiratory Disease, Guangzhou, China.

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http://dx.doi.org/10.7150/thno.28119DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6485294PMC
April 2019

DNA methylation profiles in African American prostate cancer patients in relation to disease progression.

Genomics 2019 01 21;111(1):10-16. Epub 2016 Feb 21.

Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, United States; Department of Epidemiology, School of Public Health, University of Washington, Seattle, WA, United States.

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http://dx.doi.org/10.1016/j.ygeno.2016.02.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4992660PMC
January 2019

Single-Cell Digital Lysates Generated by Phase-Switch Microfluidic Device Reveal Transcriptome Perturbation of Cell Cycle.

ACS Nano 2018 05 18;12(5):4687-4694. Epub 2018 Apr 18.

Division of Periodontology, Diagnostic Sciences and Dental Hygiene, and Division of Biomedical Sciences, Herman Ostrow School of Dentistry , University of Southern California , Los Angeles , California 90089 , United States.

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http://dx.doi.org/10.1021/acsnano.8b01272DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5997256PMC
May 2018

loss is associated with prostate cancer recurrence and alterations in tumor DNA methylation profiles.

Oncotarget 2017 Oct 15;8(48):84338-84348. Epub 2017 Sep 15.

Division of Public Health Sciences, Fred Hutchison Cancer Research Center, Seattle, Washington, USA.

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http://dx.doi.org/10.18632/oncotarget.20940DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5663600PMC
October 2017

Epigenetic signature of Gleason score and prostate cancer recurrence after radical prostatectomy.

Clin Epigenetics 2016;8:97. Epub 2016 Sep 15.

Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, WA 98109-1024 USA ; Department of Epidemiology, University of Washington School of Public Health, Seattle, WA USA.

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http://dx.doi.org/10.1186/s13148-016-0260-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5024414PMC
April 2017

Novel Gene Expression Signature Predictive of Clinical Recurrence After Radical Prostatectomy in Early Stage Prostate Cancer Patients.

Prostate 2016 10 8;76(14):1239-56. Epub 2016 Jun 8.

Department of Preventive Medicine, Keck School of Medicine of USC, Norris Comprehensive Cancer Center, Los Angeles, California.

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http://dx.doi.org/10.1002/pros.23211DOI Listing
October 2016

Targeted methylation sequencing reveals dysregulated Wnt signaling in Parkinson disease.

J Genet Genomics 2016 10 13;43(10):587-592. Epub 2016 May 13.

Institute of Precision Medicine, The Xiangya Hospital, State Key Laboratory of Medical Genetics, Xiangya Medical School, Central South University, Changsha 410078, China. Electronic address:

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http://dx.doi.org/10.1016/j.jgg.2016.05.002DOI Listing
October 2016

RIPK1 mediates axonal degeneration by promoting inflammation and necroptosis in ALS.

Science 2016 Aug;353(6299):603-8

Department of Cell Biology, Harvard Medical School, 240 Longwood Avenue, Boston, MA 02115, USA. Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 26 QiuYue Road, PuDong District, Shanghai, 201210, China.

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http://www.sciencemag.org/lookup/doi/10.1126/science.aaf6803
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http://dx.doi.org/10.1126/science.aaf6803DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5444917PMC
August 2016

Translational Initiation at a Non-AUG Start Codon for Human and Mouse Negative Elongation Factor-B.

PLoS One 2015 26;10(5):e0127422. Epub 2015 May 26.

Department of Molecular Medicine, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0127422PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4444357PMC
April 2016

Identification of mutation in GTPBP2 in patients of a family with neurodegeneration accompanied by iron deposition in the brain.

Neurobiol Aging 2016 Feb 6;38:216.e11-216.e18. Epub 2015 Nov 6.

School of Biology, College of Sciences, University of Tehran, Tehran, Iran; Department of Biotechnology, College of Sciences, University of Tehran, Tehran, Iran. Electronic address:

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http://dx.doi.org/10.1016/j.neurobiolaging.2015.10.034DOI Listing
February 2016

Epigenomic profiling of DNA methylation in paired prostate cancer versus adjacent benign tissue.

Prostate 2015 Dec 18;75(16):1941-50. Epub 2015 Sep 18.

Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington.

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http://dx.doi.org/10.1002/pros.23093DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4928710PMC
December 2015

Epigenomic profiling of prostate cancer identifies differentially methylated genes in TMPRSS2:ERG fusion-positive versus fusion-negative tumors.

Clin Epigenetics 2015 12;7:128. Epub 2015 Dec 12.

Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA USA ; Department of Epidemiology, School of Public Health, University of Washington, Seattle, WA USA.

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http://dx.doi.org/10.1186/s13148-015-0161-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676897PMC
December 2015

Accessing Genetic Information with Liquid Biopsies.

Trends Genet 2015 Oct;31(10):564-575

Oncology, Illumina, Inc., 5200 Illumina Way, San Diego, CA 92122, USA. Electronic address:

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http://dx.doi.org/10.1016/j.tig.2015.06.001DOI Listing
October 2015

Genomic analysis reveals that immune function genes are strongly linked to clinical outcome in the North Central Cancer Treatment Group n9831 Adjuvant Trastuzumab Trial.

J Clin Oncol 2015 Mar 20;33(7):701-8. Epub 2015 Jan 20.

Edith A. Perez, E. Aubrey Thompson, Yan W. Asmann, and Xochiquetzal J. Geiger, Mayo Clinic, Jacksonville, FL; Karla V. Ballman, S. Keith Anderson, Krishna R. Kalari, Jeanette E. Eckel-Passow, Kathleen S. Tenner, Jin Jen, Beiyun Chen, Robert B. Jenkins, and Monica M. Reinholz, Mayo Clinic, Rochester, MN; Amylou C. Dueck, and Ann E. McCullough, Mayo Clinic, Scottsdale, AZ; Jian-Bing Fan, Illumina, San Diego, CA; George W. Sledge, Stanford School of Medicine, Palo Alto, CA; Eric P. Winer, Harvard Medical School, Boston, MA; and Julie R. Gralow, Seattle Cancer Care Alliance, Seattle, WA.

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http://dx.doi.org/10.1200/JCO.2014.57.6298DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4334774PMC
March 2015

CDK6 levels regulate quiescence exit in human hematopoietic stem cells.

Cell Stem Cell 2015 Mar 19;16(3):302-13. Epub 2015 Feb 19.

Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada; Department of Molecular Genetics, University of Toronto, Toronto, ON M5S 1A8, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2015.01.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4359055PMC
March 2015

HMSN-P caused by p.Pro285Leu mutation in TFG is not confined to patients with Far East ancestry.

Neurobiol Aging 2015 Mar 16;36(3):1606.e1-7. Epub 2014 Dec 16.

School of Biology, College of Science, University of Tehran, Tehran, Iran; Department of Biotechnology, College of Science, University of Tehran, Tehran, Iran. Electronic address:

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http://dx.doi.org/10.1016/j.neurobiolaging.2014.11.021DOI Listing
March 2015

Challenges and opportunities for next-generation sequencing in companion diagnostics.

Expert Rev Mol Diagn 2015 Feb 24;15(2):193-209. Epub 2014 Sep 24.

Illumina, Inc. 5200 Illumina Way, San Diego, CA 92122, USA.

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http://www.tandfonline.com/doi/full/10.1586/14737159.2015.96
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http://dx.doi.org/10.1586/14737159.2015.961916DOI Listing
February 2015

Transcriptome profiling of archived sectioned formalin-fixed paraffin-embedded (AS-FFPE) tissue for disease classification.

PLoS One 2014 30;9(1):e86961. Epub 2014 Jan 30.

Liver Cancer Program, Tisch Cancer Institute, Division of Liver Diseases, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0086961PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3907407PMC
December 2014

Diagnosis of cystathionine beta-synthase deficiency by genetic analysis.

J Neurol Sci 2014 Dec 22;347(1-2):305-9. Epub 2014 Oct 22.

School of Biology, College of Science, University of Tehran, Tehran, Iran; Department of Biotechnology, College of Science, University of Tehran, Tehran, Iran. Electronic address:

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http://dx.doi.org/10.1016/j.jns.2014.10.031DOI Listing
December 2014

Targeted and genome-wide sequencing reveal single nucleotide variations impacting specificity of Cas9 in human stem cells.

Nat Commun 2014 Nov 26;5:5507. Epub 2014 Nov 26.

1] Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1038/ncomms6507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4352754PMC
November 2014

Identification of p.Gln858* in ATP13A2 in two EOPD patients and presentation of their clinical features.

Neurosci Lett 2014 Aug 17;577:106-11. Epub 2014 Jun 17.

Department of Biotechnology, College of Science, University of Tehran, Tehran, Iran; School of Biology, College of Science, University of Tehran, Tehran, Iran. Electronic address:

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http://dx.doi.org/10.1016/j.neulet.2014.06.023DOI Listing
August 2014

Validation study of genes with hypermethylated promoter regions associated with prostate cancer recurrence.

Cancer Epidemiol Biomarkers Prev 2014 Jul 9;23(7):1331-9. Epub 2014 Apr 9.

Authors' Affiliations: Division of Public Health Sciences, Fred Hutchinson Cancer Research Center; Epidemiology, University of Washington, Seattle, Washington;

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http://cebp.aacrjournals.org/cgi/doi/10.1158/1055-9965.EPI-1
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http://dx.doi.org/10.1158/1055-9965.EPI-13-1000DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4082437PMC
July 2014

Tumor hypomethylation at 6p21.3 associates with longer time to recurrence of high-grade serous epithelial ovarian cancer.

Cancer Res 2014 Jun 11;74(11):3084-91. Epub 2014 Apr 11.

Authors' Affiliations: Departments of Health Sciences Research, Medical Oncology, Obstetrics and Gynecology, and Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota; Department of Medicine, David Geffen School of Medicine, University of California, Los Angeles; Department of Research, Illumina, San Diego, California; Departments of Cancer Biology and Biostatistics, University of Kansas Medical Center, Kansas City, Kansas; and Vaccine and Gene Therapy Institute of Florida, Port St. Lucie, Florida

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http://dx.doi.org/10.1158/0008-5472.CAN-13-3198DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4054691PMC
June 2014

Negative elongation factor controls energy homeostasis in cardiomyocytes.

Cell Rep 2014 Apr 20;7(1):79-85. Epub 2014 Mar 20.

Department of Molecular Medicine, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2014.02.028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4277258PMC
April 2014

Reduced lymphoid lineage priming promotes human hematopoietic stem cell expansion.

Cell Stem Cell 2014 Jan;14(1):94-106

Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada; Department of Molecular Genetics, University of Toronto, Toronto, ON M5G 1L7, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2013.11.021DOI Listing
January 2014

Mutation in ST6GALNAC5 identified in family with coronary artery disease.

Sci Rep 2014 Jan 8;4:3595. Epub 2014 Jan 8.

1] School of Biology, College of Science, University of Tehran, Tehran, Iran [2] Dept. of Biotechnology, College of Science, University of Tehran, Tehran, Iran.

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http://dx.doi.org/10.1038/srep03595DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3884232PMC
January 2014

A panel of CpG methylation sites distinguishes human embryonic stem cells and induced pluripotent stem cells.

Stem Cell Reports 2014 Jan 26;2(1):36-43. Epub 2013 Dec 26.

Department of Human Genetics, Broad Stem Cell Research Center, David Geffen School of Medicine, University of California, Los Angeles, 695 Charles Young Drive, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1016/j.stemcr.2013.11.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3916755PMC
January 2014

Regulation of adipose oestrogen output by mechanical stress.

Nat Commun 2013 ;4:1821

Department of Molecular Medicine/Institute of Biotechnology, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.

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http://dx.doi.org/10.1038/ncomms2794DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3921626PMC
December 2013

Mutation in CYP27A1 identified in family with coronary artery disease.

Eur J Med Genet 2013 Dec 28;56(12):655-60. Epub 2013 Sep 28.

School of Biology, College of Science, University of Tehran, Tehran, Iran; Genome Analysis, Leibniz Institute for Age Research - Fritz Lipmann Institute, Jena, Germany.

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http://dx.doi.org/10.1016/j.ejmg.2013.09.008DOI Listing
December 2013

APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma.

Cancer Res 2013 Dec 23;73(24):7222-31. Epub 2013 Oct 23.

Authors' Affiliations: Biochemistry, Molecular Biology and Biophysics Department; Masonic Cancer Center, University of Minnesota, Minneapolis; Division of Biomedical Statistics and Informatics, Department of Health Sciences Research; Medical Genome Facility and Department of Laboratory Medicine and Pathology; Department of Laboratory Medicine and Pathology; Division of Medical Oncology, Department of Oncology; Division of Epidemiology, Department of Health Sciences Research; Division of Oncology Research, Department of Oncology; Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic; Women's Cancer Program, Mayo Clinic Cancer Center, Rochester, Minnesota; Department of Cancer Biology, University of Kansas, Kansas City, Kansas; Department of Obstetrics & Gynecology, University of Washington School of Medicine, Seattle, Washington; and Illumina Cambridge Ltd, Chesterford Research Park, Little Chesterford, Cambridge, United Kingdom.

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http://dx.doi.org/10.1158/0008-5472.CAN-13-1753DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3867573PMC
December 2013

Accelerating genomic data publishing and sharing.

Genom Data 2013 Dec 28;1. Epub 2013 May 28.

Elsevier Publishing, Boston, MA, USA.

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http://dx.doi.org/10.1016/j.gdata.2013.05.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4608866PMC
December 2013

Translational utility of next-generation sequencing.

Genomics 2013 Sep 28;102(3):137-9. Epub 2013 Apr 28.

Illumina, Inc., San Diego, CA 92122, USA.

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http://dx.doi.org/10.1016/j.ygeno.2013.04.012DOI Listing
September 2013

The transcriptional architecture of early human hematopoiesis identifies multilevel control of lymphoid commitment.

Nat Immunol 2013 Jul 26;14(7):756-63. Epub 2013 May 26.

Campbell Family Institute for Cancer Research, Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.

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http://dx.doi.org/10.1038/ni.2615DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4961471PMC
July 2013

Genetic analysis and SOD1 mutation screening in Iranian amyotrophic lateral sclerosis patients.

Neurobiol Aging 2013 May 9;34(5):1516.e1-8. Epub 2012 Oct 9.

School of Biology, College of Science, University of Tehran, Tehran, Iran.

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http://dx.doi.org/10.1016/j.neurobiolaging.2012.09.006DOI Listing
May 2013

Integrative molecular analysis of intrahepatic cholangiocarcinoma reveals 2 classes that have different outcomes.

Gastroenterology 2013 Apr 4;144(4):829-40. Epub 2013 Jan 4.

Barcelona-Clínic Liver Cancer Group (HCC Translational Research Laboratory, Liver Unit, Pathology Department), Institut d'Investigacions Biomèdiques August Pi I Sunyer, Liver Unit, Hospital Clínic, Universitat de Barcelona, Barcelona, Catalonia, Spain.

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http://dx.doi.org/10.1053/j.gastro.2013.01.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3624083PMC
April 2013

Genome-wide methylation profiles reveal quantitative views of human aging rates.

Mol Cell 2013 Jan 21;49(2):359-367. Epub 2012 Nov 21.

Molecular Medicine Research Center and Department of Ophthalmology, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China.

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http://dx.doi.org/10.1016/j.molcel.2012.10.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3780611PMC
January 2013

Identification of disease-associated DNA methylation in B cells from Crohn's disease and ulcerative colitis patients.

Dig Dis Sci 2012 Dec 21;57(12):3145-53. Epub 2012 Jul 21.

Department of Surgery, College of Medicine, The Pennsylvania State University, 500 University Drive, MC H 137, Hershey, PA 17033, USA.

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http://dx.doi.org/10.1007/s10620-012-2288-zDOI Listing
December 2012

Preprocessing and Quality Control Strategies for Illumina DASL Assay-Based Brain Gene Expression Studies with Semi-Degraded Samples.

Front Genet 2012 24;3:11. Epub 2012 Feb 24.

Department of Neuroscience, UC San Diego Autism Center of Excellence, School of Medicine, National Institutes of Health, University of California San Diego La Jolla, CA, USA.

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http://dx.doi.org/10.3389/fgene.2012.00011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3286152PMC
October 2012

Age-dependent brain gene expression and copy number anomalies in autism suggest distinct pathological processes at young versus mature ages.

PLoS Genet 2012 22;8(3):e1002592. Epub 2012 Mar 22.

Department of Neuroscience, NIH-UCSD Autism Center of Excellence, School of Medicine, University of California San Diego, La Jolla, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1002592DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3310790PMC
September 2012

miRNA expression profiling using Illumina Universal BeadChips.

Methods Mol Biol 2012 ;822:103-16

Illumina, Inc., San Diego, CA, USA.

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http://link.springer.com/10.1007/978-1-61779-427-8_7
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http://dx.doi.org/10.1007/978-1-61779-427-8_7DOI Listing
April 2012

Highly multiplexed and strand-specific single-cell RNA 5' end sequencing.

Nat Protoc 2012 Apr 5;7(5):813-28. Epub 2012 Apr 5.

Laboratory for Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden.

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http://dx.doi.org/10.1038/nprot.2012.022DOI Listing
April 2012

miR-1289 and "Zipcode"-like Sequence Enrich mRNAs in Microvesicles.

Mol Ther Nucleic Acids 2012 Feb 7;1:e10. Epub 2012 Feb 7.

Department of Neurology and Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1038/mtna.2011.2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3381601PMC
February 2012

Gene-expression signature of vascular invasion in hepatocellular carcinoma.

J Hepatol 2011 Dec 13;55(6):1325-31. Epub 2011 Apr 13.

Mount Sinai Liver Cancer Program, (Division of Liver Diseases, Department of Medicine, Surgical Oncology, Department of Surgery, Department of Pathology, Department of Preventive Medicine), Mount Sinai School of Medicine, New York, NY 10029, USA.

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http://dx.doi.org/10.1016/j.jhep.2011.02.034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3624094PMC
December 2011

Gene expression profiling in formalin-fixed, paraffin-embedded tissues using the whole-genome DASL assay.

Methods Mol Biol 2011 ;784:77-98

Illumina, Inc., San Diego, CA, USA.

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http://dx.doi.org/10.1007/978-1-61779-289-2_6DOI Listing
December 2011

Genetic and genomic analyses of RNA polymerase II-pausing factor in regulation of mammalian transcription and cell growth.

J Biol Chem 2011 Oct 24;286(42):36248-57. Epub 2011 Aug 24.

Department of Molecular Medicine/Institute of Biotechnology, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78245, USA.

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http://dx.doi.org/10.1074/jbc.M111.269167DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3196092PMC
October 2011

Effect of PITX2 knockdown on transcriptome of primary human trabecular meshwork cell cultures.

Mol Vis 2011 5;17:1209-21. Epub 2011 May 5.

Department of Genetics, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3102028PMC
September 2011

Genome-wide expression assay comparison across frozen and fixed postmortem brain tissue samples.

BMC Genomics 2011 Sep 10;12:449. Epub 2011 Sep 10.

Department of Neuroscience, NIH-UCSD Autism Center of Excellence, School of Medicine, University of California San Diego, 8110 La Jolla Shores Dr Ste 201, La Jolla, CA 92093, USA.

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http://dx.doi.org/10.1186/1471-2164-12-449DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3179967PMC
September 2011

Gene expression profiling of human whole blood samples with the Illumina WG-DASL assay.

BMC Genomics 2011 Aug 15;12:412. Epub 2011 Aug 15.

Scripps Genomic Medicine and Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-12-412DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3175478PMC
August 2011

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq.

Genome Res 2011 Jul 4;21(7):1160-7. Epub 2011 May 4.

Laboratory for Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden.

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http://dx.doi.org/10.1101/gr.110882.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3129258PMC
July 2011

Combining clinical, pathology, and gene expression data to predict recurrence of hepatocellular carcinoma.

Gastroenterology 2011 May 12;140(5):1501-12.e2. Epub 2011 Feb 12.

HCC Translational Research Laboratory, Barcelona-Clinic Liver Cancer Group, Institut d'Investigacions Biomèdiques August Pi i Sunyer, Liver Unit, Hospital Clinic, Barcelona, Spain.

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http://dx.doi.org/10.1053/j.gastro.2011.02.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3081971PMC
May 2011

Genome-wide DNA methylation profiling.

Wiley Interdiscip Rev Syst Biol Med 2010 Mar-Apr;2(2):210-223

Illumina, Inc., 9885 Towne Centre Drive, San Diego, CA 92121, USA.

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https://www.dkfz.de/en/tox/download/gerh/pdf-files/Gerhauser
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http://doi.wiley.com/10.1002/wsbm.35
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http://dx.doi.org/10.1002/wsbm.35DOI Listing
February 2011

Analysis of gene expression in stage I serous tumors identifies critical pathways altered in ovarian cancer.

Gynecol Oncol 2009 Jul 1;114(1):3-11. Epub 2009 May 1.

Division of Experimental Pathology, Mayo Clinic College of Medicine, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1016/j.ygyno.2009.04.002DOI Listing
July 2009

GoldenGate assay for DNA methylation profiling.

Methods Mol Biol 2009 ;507:149-63

Illumina Inc., San Diego, CA, USA.

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http://dx.doi.org/10.1007/978-1-59745-522-0_12DOI Listing
March 2009

Microarray-based DNA methylation analysis of imprinted loci in a patient with transient neonatal diabetes mellitus.

Am J Med Genet A 2008 Dec;146A(24):3227-9

Institute of Human Genetics, University Hospital Schleswig-Holstein, Campus Kiel, Christian-Albrechts University, Kiel, Germany.

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http://dx.doi.org/10.1002/ajmg.a.32577DOI Listing
December 2008

BeadArray-based solutions for enabling the promise of pharmacogenomics.

Biotechniques 2005 Oct;39(10 Suppl):S583-8

Illumina, San Diego, CA 92121 , USA.

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http://dx.doi.org/10.2144/000112047DOI Listing
October 2005