Jiajie Peng

Jiajie Peng

UNVERIFIED PROFILE

Are you Jiajie Peng?   Register this Author

Register author
Jiajie Peng

Jiajie Peng

Publications by authors named "Jiajie Peng"

Are you Jiajie Peng?   Register this Author

25Publications

327Reads

-Profile Views

Predicting disease-related phenotypes using an integrated phenotype similarity measurement based on HPO.

BMC Syst Biol 2019 Apr 5;13(Suppl 2):34. Epub 2019 Apr 5.

School of Computer Science, Northwestern Polytechnical University, Xi'an, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12918-019-0697-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6449884PMC
April 2019

A learning-based framework for miRNA-disease association identification using neural networks.

Bioinformatics 2019 Apr 12. Epub 2019 Apr 12.

School of Data Science, Fudan University, Shanghai, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btz254DOI Listing
April 2019

Predicting Parkinson's Disease Genes Based on Node2vec and Autoencoder.

Front Genet 2019 2;10:226. Epub 2019 Apr 2.

School of Computer Science, Northwestern Polytechnical University, Xi'an, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fgene.2019.00226DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6454041PMC
April 2019

Mining Relationships among Multiple Entities in Biological Networks.

IEEE/ACM Trans Comput Biol Bioinform 2019 Mar 13. Epub 2019 Mar 13.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1109/TCBB.2019.2904965DOI Listing
March 2019

An online tool for measuring and visualizing phenotype similarities using HPO.

BMC Genomics 2018 Aug 13;19(Suppl 6):571. Epub 2018 Aug 13.

Department of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, 518055, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12864-018-4927-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6101067PMC
August 2018

Measuring phenotype-phenotype similarity through the interactome.

BMC Bioinformatics 2018 04 11;19(Suppl 5):114. Epub 2018 Apr 11.

School of Computer Science, Northwestern Polytechnical University, Xi'an, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12859-018-2102-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5907215PMC
April 2018

Improving the measurement of semantic similarity by combining gene ontology and co-functional network: a random walk based approach.

BMC Syst Biol 2018 03 19;12(Suppl 2):18. Epub 2018 Mar 19.

School of Computer Science, Northwestern Polytechnical University, Xi'an, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12918-018-0539-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5861498PMC
March 2018

InfAcrOnt: calculating cross-ontology term similarities using information flow by a random walk.

BMC Genomics 2018 01 19;19(Suppl 1):919. Epub 2018 Jan 19.

School of Life Science and Technology, Harbin Institute of Technology, Harbin, 150088, People's Republic of China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12864-017-4338-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5780854PMC
January 2018

Identifying consistent disease subnetworks using DNet.

Methods 2017 12 12;131:104-110. Epub 2017 Aug 12.

Institute for Biomedical Informatics, University of Kentucky, Lexington, USA; Department of Internal Medicine, University of Kentucky, Lexington, USA; Department of Computer Science, University of Kentucky, Lexington, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ymeth.2017.07.024DOI Listing
December 2017

Identifying term relations cross different gene ontology categories.

BMC Bioinformatics 2017 12 28;18(Suppl 16):573. Epub 2017 Dec 28.

School of Computer Science, Northwestern Polytechnical University, Xi'an, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12859-017-1959-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5751813PMC
December 2017

Investigations on factors influencing HPO-based semantic similarity calculation.

J Biomed Semantics 2017 09 20;8(Suppl 1):34. Epub 2017 Sep 20.

Northwestern Polytechnical University, 127 West Youyi Road, Xi'an, 710072, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13326-017-0144-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5763495PMC
September 2017

Erratum to: InteGO2: a web tool for measuring and visualizing gene semantic similarities using Gene Ontology.

BMC Genomics 2017 03 28;18(1):262. Epub 2017 Mar 28.

Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12864-017-3651-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5368946PMC
March 2017

Predicting disease-related genes using integrated biomedical networks.

BMC Genomics 2017 01 25;18(Suppl 1):1043. Epub 2017 Jan 25.

Institue of Biomedical Informatics, College of Medicine, University of Kentucky, Lexington, 40536, KY, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12864-016-3263-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5310285PMC
January 2017

InteGO2: a web tool for measuring and visualizing gene semantic similarities using Gene Ontology.

BMC Genomics 2016 08 31;17 Suppl 5:530. Epub 2016 Aug 31.

Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, 48824, MI, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12864-016-2828-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5009821PMC
August 2016

Extending gene ontology with gene association networks.

Bioinformatics 2016 04 7;32(8):1185-94. Epub 2015 Dec 7.

Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA, Department of Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btv712DOI Listing
April 2016

Joint detection of copy number variations in parent-offspring trios.

Bioinformatics 2016 04 7;32(8):1130-7. Epub 2015 Dec 7.

School of Computer Science and Technology, Harbin Institute of Technology, Harbin 150001, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btv707DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4907378PMC
April 2016

SemFunSim: a new method for measuring disease similarity by integrating semantic and gene functional association.

PLoS One 2014 16;9(6):e99415. Epub 2014 Jun 16.

Center for Bioinformatics, School of Computer Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0099415PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4059643PMC
October 2015

Measuring semantic similarities by combining gene ontology annotations and gene co-function networks.

BMC Bioinformatics 2015 Feb 14;16:44. Epub 2015 Feb 14.

Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12859-015-0474-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4339680PMC
February 2015

A generalized topological entropy for analyzing the complexity of DNA sequences.

PLoS One 2014 12;9(2):e88519. Epub 2014 Feb 12.

School of Computer Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0088519PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3922877PMC
January 2015

LncRNA2Target: a database for differentially expressed genes after lncRNA knockdown or overexpression.

Nucleic Acids Res 2015 Jan 15;43(Database issue):D193-6. Epub 2014 Nov 15.

School of Computer Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gku1173DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383967PMC
January 2015

Identifying cross-category relations in gene ontology and constructing genome-specific term association networks.

BMC Bioinformatics 2013 21;14 Suppl 2:S15. Epub 2013 Jan 21.

School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-14-S2-S15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3549802PMC
September 2013

A study of effective diffusivity in porous scaffold by Brownian dynamics simulation.

J Colloid Interface Sci 2010 Feb 4;342(2):620-8. Epub 2009 Nov 4.

Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jcis.2009.10.079DOI Listing
February 2010