Jia-Ming Chang

Jia-Ming Chang

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Jia-Ming Chang

Jia-Ming Chang

Publications by authors named "Jia-Ming Chang"

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MS2CNN: predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks.

BMC Genomics 2019 Dec 24;20(Suppl 9):906. Epub 2019 Dec 24.

Department of Computer Science, National Chengchi University, 11605, Taipei City, Taiwan.

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http://dx.doi.org/10.1186/s12864-019-6297-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6929458PMC
December 2019

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.

Authors:
Naihui Zhou Yuxiang Jiang Timothy R Bergquist Alexandra J Lee Balint Z Kacsoh Alex W Crocker Kimberley A Lewis George Georghiou Huy N Nguyen Md Nafiz Hamid Larry Davis Tunca Dogan Volkan Atalay Ahmet S Rifaioglu Alperen Dalkıran Rengul Cetin Atalay Chengxin Zhang Rebecca L Hurto Peter L Freddolino Yang Zhang Prajwal Bhat Fran Supek José M Fernández Branislava Gemovic Vladimir R Perovic Radoslav S Davidović Neven Sumonja Nevena Veljkovic Ehsaneddin Asgari Mohammad R K Mofrad Giuseppe Profiti Castrense Savojardo Pier Luigi Martelli Rita Casadio Florian Boecker Heiko Schoof Indika Kahanda Natalie Thurlby Alice C McHardy Alexandre Renaux Rabie Saidi Julian Gough Alex A Freitas Magdalena Antczak Fabio Fabris Mark N Wass Jie Hou Jianlin Cheng Zheng Wang Alfonso E Romero Alberto Paccanaro Haixuan Yang Tatyana Goldberg Chenguang Zhao Liisa Holm Petri Törönen Alan J Medlar Elaine Zosa Itamar Borukhov Ilya Novikov Angela Wilkins Olivier Lichtarge Po-Han Chi Wei-Cheng Tseng Michal Linial Peter W Rose Christophe Dessimoz Vedrana Vidulin Saso Dzeroski Ian Sillitoe Sayoni Das Jonathan Gill Lees David T Jones Cen Wan Domenico Cozzetto Rui Fa Mateo Torres Alex Warwick Vesztrocy Jose Manuel Rodriguez Michael L Tress Marco Frasca Marco Notaro Giuliano Grossi Alessandro Petrini Matteo Re Giorgio Valentini Marco Mesiti Daniel B Roche Jonas Reeb David W Ritchie Sabeur Aridhi Seyed Ziaeddin Alborzi Marie-Dominique Devignes Da Chen Emily Koo Richard Bonneau Vladimir Gligorijević Meet Barot Hai Fang Stefano Toppo Enrico Lavezzo Marco Falda Michele Berselli Silvio C E Tosatto Marco Carraro Damiano Piovesan Hafeez Ur Rehman Qizhong Mao Shanshan Zhang Slobodan Vucetic Gage S Black Dane Jo Erica Suh Jonathan B Dayton Dallas J Larsen Ashton R Omdahl Liam J McGuffin Danielle A Brackenridge Patricia C Babbitt Jeffrey M Yunes Paolo Fontana Feng Zhang Shanfeng Zhu Ronghui You Zihan Zhang Suyang Dai Shuwei Yao Weidong Tian Renzhi Cao Caleb Chandler Miguel Amezola Devon Johnson Jia-Ming Chang Wen-Hung Liao Yi-Wei Liu Stefano Pascarelli Yotam Frank Robert Hoehndorf Maxat Kulmanov Imane Boudellioua Gianfranco Politano Stefano Di Carlo Alfredo Benso Kai Hakala Filip Ginter Farrokh Mehryary Suwisa Kaewphan Jari Björne Hans Moen Martti E E Tolvanen Tapio Salakoski Daisuke Kihara Aashish Jain Tomislav Šmuc Adrian Altenhoff Asa Ben-Hur Burkhard Rost Steven E Brenner Christine A Orengo Constance J Jeffery Giovanni Bosco Deborah A Hogan Maria J Martin Claire O'Donovan Sean D Mooney Casey S Greene Predrag Radivojac Iddo Friedberg

Genome Biol 2019 11 19;20(1):244. Epub 2019 Nov 19.

Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, IA, USA.

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http://dx.doi.org/10.1186/s13059-019-1835-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6864930PMC
November 2019

The Alteration of CTNNBIP1 in Lung Cancer.

Int J Mol Sci 2019 Nov 13;20(22). Epub 2019 Nov 13.

Department of Molecular Biology and Human Genetics, Tzu Chi University, Hualien 97004, Taiwan.

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http://dx.doi.org/10.3390/ijms20225684DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6888110PMC
November 2019

Incorporating alignment uncertainty into Felsenstein's phylogenetic bootstrap to improve its reliability.

Bioinformatics 2019 Feb 6. Epub 2019 Feb 6.

Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.

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http://dx.doi.org/10.1093/bioinformatics/btz082DOI Listing
February 2019

Pharmacological inhibition of bacterial β-glucuronidase prevents irinotecan-induced diarrhea without impairing its antitumor efficacy in vivo.

Pharmacol Res 2019 01 1;139:41-49. Epub 2018 Nov 1.

Center for Biomarkers and Biotech Drugs, Kaohsiung Medical University, Kaohsiung 807, Taiwan; Graduate Institute of Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung 807, Taiwan; Department of Biomedical and Environmental Biology, Kaohsiung Medical University, Kaohsiung 807, Taiwan; Institute of Biomedical Sciences, National Sun Yat-sen University, Kaohsiung 804, Taiwan; Department of Medical Research, Kaohsiung Medical University Hospital, Kaohsiung 807, Taiwan. Electronic address:

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http://dx.doi.org/10.1016/j.phrs.2018.10.029DOI Listing
January 2019

Recurrent tertiary hyperparathyroidism due to supernumerary parathyroid glands in a patient receiving long-term hemodialysis: a case report.

BMC Endocr Disord 2019 Jan 28;19(1):16. Epub 2019 Jan 28.

Department of Pathology, Ditmanson Medical Foundation Chia-Yi Christian Hospital, 539 Chung Hsiao Rd, Chiayi, 600, Taiwan.

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http://dx.doi.org/10.1186/s12902-019-0346-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6350335PMC
January 2019

From one incision to one port: The surgical technique and the evolution of segmentectomy in patients with pulmonary tuberculosis.

PLoS One 2018 15;13(5):e0197283. Epub 2018 May 15.

Division of Thoracic Surgery, Department of Surgery, National Cheng Kung University Hospital, College of Medical College, National Cheng Kung University, Tainan, Taiwan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0197283PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5953493PMC
November 2018

Polycomb-Dependent Chromatin Looping Contributes to Gene Silencing during Drosophila Development.

Mol Cell 2018 07 28;71(1):73-88.e5. Epub 2018 Jun 28.

Institute of Human Genetics, UMR9002 CNRS and University of Montpellier, 141 Rue de la Cardonille, 34396 Montpellier Cedex 5, France. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10972765183040
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http://dx.doi.org/10.1016/j.molcel.2018.05.032DOI Listing
July 2018

Pull method percutaneous endoscopic gastrostomy using transnasal ultrathin endoscopy in head and neck cancer.

Endoscopy 2017 08 14;49(8):E188-E189. Epub 2017 Jun 14.

Division of Thoracic Surgery, Department of Surgery, Chia-Yi Christian Hospital, Chia-Yi, Taiwan.

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http://dx.doi.org/10.1055/s-0043-111709DOI Listing
August 2017

7-Dehydrocholesterol (7-DHC), But Not Cholesterol, Causes Suppression of Canonical TGF-β Signaling and Is Likely Involved in the Development of Atherosclerotic Cardiovascular Disease (ASCVD).

J Cell Biochem 2017 06 13;118(6):1387-1400. Epub 2016 Dec 13.

Department of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, Doisy Research Center, 1100 S. Grand Blvd., St. Louis, Missouri 63104.

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http://doi.wiley.com/10.1002/jcb.25797
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http://dx.doi.org/10.1002/jcb.25797DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6123222PMC
June 2017

Curcumin Inhibits LIN-28A through the Activation of miRNA-98 in the Lung Cancer Cell Line A549.

Molecules 2017 Jun 3;22(6). Epub 2017 Jun 3.

Department of Respiratory Therapy, College of Medicine, Kaohsiung Medical University, Kaohsiung 80756, Taiwan.

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http://dx.doi.org/10.3390/molecules22060929DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6152786PMC
June 2017

From biportal to uniportal video-assisted thoracoscopic anatomical lung resection: A single-institute experience.

Medicine (Baltimore) 2016 Oct;95(40):e5097

aDivision of Thoracic Surgery, Department of Surgery, Chia-Yi Christian Hospital, Chia-Yi, Taiwan bGraduate Institute of Clinical Medicine, National Cheng Kung University, Tainan, Taiwan cGraduate Institute of Medical Sciences, College of Health Science, Chang Jung Christian University, Tainan, Taiwan dDivision of Thoracic Surgery, Department of Surgery, National Cheng Kung University Hospital, Tainan, Taiwan eDivision of Pulmonary and Critical Care Medicine, Chia-Yi Christian Hospital, and Department of Respiratory Therapy, China Medical University fDivision of Thoracic Surgery, Department of Surgery, Tainan Municipal Hospital, Tainan, Taiwan gDepartment of Thoracic Surgery, Coruna University Hospital and Minimally Invasive Thoracic Surgery Unit, Coruna, Spain.

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http://dx.doi.org/10.1097/MD.0000000000005097DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5059092PMC
October 2016

Pleural tenting as an effective adjunct in patients with pneumothorax secondary to emphysema evaluated with computed tomography scan.

J Thorac Dis 2016 Oct;8(Suppl 9):S652-S658

Division of Thoracic Surgery, Department of Surgery, National Cheng Kung University Hospital, College of Medical College, National Cheng Kung University, Tainan, Taiwan.

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http://dx.doi.org/10.21037/jtd.2016.09.37DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5179346PMC
October 2016

The Role of Video-Assisted Thoracoscopic Therapeutic Resection for Medically Failed Pulmonary Tuberculosis.

Medicine (Baltimore) 2016 May;95(18):e3511

From the Department of Surgery, Division of Thoracic Surgery, National Cheng Kung University Hospital, College of Medical College, National Cheng Kung University, Tainan (Y-LT, Y-YC, Y-TY); Department of Surgery, Division of Thoracic Surgery, Chia-Yi Christian Hospital, Chia-Yi (J-MC); Graduate Institute of Medical Sciences, Collage of Health Science, Chang Jung Christian University, Tainan (J-MC); Department of Diagnostic Radiology, National Cheng Kung University Hospital, College of Medical College, National Cheng Kung University (Y-SL, LC); Department of Surgery, Division of Thoracic Surgery, Tainan Municipal Hospital (M-HW); Center for Infection Control, National Cheng Kung University Hospital (C-LL); and Institute of Clinical Medicine, College of Medical College (J-MC, Y-TY), National Cheng Kung University, Tainan, Taiwan.

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http://dx.doi.org/10.1097/MD.0000000000003511DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4863768PMC
May 2016

Behind and Beyond the Masaoka Staging: A 25-Year Follow-up Study of Tumor Recurrence in Completely Resected Thymic Epithelial Tumors in a Single Institution.

Medicine (Baltimore) 2015 Dec;94(52):e2278

From the Division of Thoracic Surgery (Y-LT, W-WL, Y-TY), Department of Surgery, National Cheng Kung University Hospital, College of Medical College, National Cheng Kung University, Tainan; Division of Thoracic Surgery (J-MC), Department of Surgery, Chia-Yi Christian Hospital, Chia-Yi; Department of Pathology (K-CC), National Cheng Kung University Hospital, College of Medical College, National Cheng Kung University; Biostatistics Consulting Center (S-CL), National Cheng Kung University Hospital, College of Medical College, National Cheng Kung University; and Institute of Clinical Medicine (S-HL, Y-TY), National Cheng Kung University, Tainan, Taiwan.

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http://dx.doi.org/10.1097/MD.0000000000002278DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5291605PMC
December 2015

Expression Divergence of Chemosensory Genes between Drosophila sechellia and Its Sibling Species and Its Implications for Host Shift.

Genome Biol Evol 2015 Oct 1;7(10):2843-58. Epub 2015 Oct 1.

Biodiversity Research Center, Academia Sinica, Taipei, Taiwan Department of Ecology and Evolution, University of Chicago

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https://academic.oup.com/gbe/article-lookup/doi/10.1093/gbe/
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http://dx.doi.org/10.1093/gbe/evv183DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4684695PMC
October 2015

Apex-to-Cupola Distance Following VATS Predicts Recurrence in Patients With Primary Spontaneous Pneumothorax.

Medicine (Baltimore) 2015 Sep;94(37):e1509

From the Department of Surgery, Division of Thoracic Surgery, Chia-Yi Christian Hospital, Chia-Yi; (JMC); Department of Surgery, Division of Thoracic Surgery, National Cheng Kung University Hospital, Tainan; (WWL, YTY, YLT, YYC); Department of Surgery, Division of Thoracic Surgery, Tainan Municipal Hospital, Tainan; (MHW); Division of Pulmonary and Critical Care Medicine, Chiayi Christian Hospital, and Department of Respiratory Therapy, China Medical University, Taiwan; (WC); and Division of Allergy, Pulmonary and Critical Care Medicine, Vanderbilt University Medical Center, Nashville, TN (RWL).

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http://dx.doi.org/10.1097/MD.0000000000001509DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4635810PMC
September 2015

TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction.

Nucleic Acids Res 2015 Jul 8;43(W1):W3-6. Epub 2015 Apr 8.

Comparative Bioinformatics, Bioinformatics and Genomics Program, Centre for Genomic Regulation (CRG), Dr Aiguader 88, 08003 Barcelona, Spain Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain

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http://dx.doi.org/10.1093/nar/gkv310DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489230PMC
July 2015

Prognostic CpG methylation biomarkers identified by methylation array in esophageal squamous cell carcinoma patients.

Int J Med Sci 2014 30;11(8):779-87. Epub 2014 May 30.

1. Institute of Basic Medical Sciences, National Cheng Kung University, Tainan, Taiwan; ; 2. Institute of Clinical Medicine, National Cheng Kung University, Tainan, Taiwan; ; 7. Department of Pharmacology, National Cheng Kung University, Tainan, Taiwan.

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http://dx.doi.org/10.7150/ijms.7405DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4057483PMC
February 2015

Deregulation of SLIT2-mediated Cdc42 activity is associated with esophageal cancer metastasis and poor prognosis.

J Thorac Oncol 2015 Jan;10(1):189-98

*Department of Molecular Biology and Human Genetics, College of Life Science, Tzu Chi University, Hualien, Taiwan; †Department of Surgery, Chia-Yi Christian Hospital, Chiayi, Taiwan; ‡Institute of Clinical Medicine, College of Medicine, National Cheng Kung University, Tainan, Taiwan; §Department of Pharmacology, College of Medicine, National Cheng Kung University, Tainan, Taiwan; ‖Department of Biomedical Engineering, School of Biomedical Science and Engineering, National Yang-Ming University, Taipei, Taiwan; ¶Institute of Basic Medical Sciences, College of Medicine, National Cheng Kung University, Tainan, Taiwan; #Department of Pathology, College of Medicine, National Cheng Kung University, Tainan, Taiwan; and **Department of Surgery, College of Medicine, National Cheng Kung University, Tainan, Taiwan.

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http://dx.doi.org/10.1097/JTO.0000000000000369DOI Listing
January 2015

Alignathon: a competitive assessment of whole-genome alignment methods.

Genome Res 2014 Dec 1;24(12):2077-89. Epub 2014 Oct 1.

Center for Biomolecular Science and Engineering, University of California Santa Cruz, Santa Cruz, California 95064, USA; Biomolecular Engineering Department, University of California Santa Cruz, Santa Cruz, California 95064, USA;

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http://dx.doi.org/10.1101/gr.174920.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4248324PMC
December 2014

Inhibition of Hec1 as a novel approach for treatment of primary liver cancer.

Cancer Chemother Pharmacol 2014 Sep 20;74(3):511-20. Epub 2014 Jul 20.

Taivex Therapeutics Corporation, 17th Floor, No. 3, Yuanqu Street, Nangang District, Taipei City, 115, Taiwan, ROC,

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http://dx.doi.org/10.1007/s00280-014-2540-7DOI Listing
September 2014

Low SOX17 expression is a prognostic factor and drives transcriptional dysregulation and esophageal cancer progression.

Int J Cancer 2014 Aug 10;135(3):563-73. Epub 2014 Jan 10.

Institute of Basic Medical Sciences College of Medicine, National Cheng Kung University, Tainan, Taiwan, Republic of China.

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http://dx.doi.org/10.1002/ijc.28695DOI Listing
August 2014

Efficient and interpretable prediction of protein functional classes by correspondence analysis and compact set relations.

PLoS One 2013 11;8(10):e75542. Epub 2013 Oct 11.

Comparative Bioinformatics, Bioinformatics and Genomics, Centre for Genomic Regulation (CRG), Barcelona, Spain ; Universitat Pompeu Fabra (UPF), Barcelona, Spain.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0075542PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3795737PMC
July 2014

Citral is renoprotective for focal segmental glomerulosclerosis by inhibiting oxidative stress and apoptosis and activating Nrf2 pathway in mice.

PLoS One 2013 17;8(9):e74871. Epub 2013 Sep 17.

Graduate Institute of Life Sciences, National Defense Medical Center, Taipei, Taiwan, R.O.C ; Department of Pathology, Tri-Service General Hospital, National Defense Medical Center, Taipei, Taiwan, R.O.C.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0074871PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3775727PMC
June 2014

TCS: a new multiple sequence alignment reliability measure to estimate alignment accuracy and improve phylogenetic tree reconstruction.

Mol Biol Evol 2014 Jun 1;31(6):1625-37. Epub 2014 Apr 1.

Comparative Bioinformatics, Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Dr. Aiguader 88, 08003 Barcelona, SpainUniversitat Pompeu Fabra (UPF), Barcelona, Spain

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http://dx.doi.org/10.1093/molbev/msu117DOI Listing
June 2014

Activity of a novel Hec1-targeted anticancer compound against breast cancer cell lines in vitro and in vivo.

Mol Cancer Ther 2014 Jun 2;13(6):1419-30. Epub 2014 Apr 2.

Authors' Affiliations: Taivex Therapeutics Corporation, Taipei; and Development Center for Biotechnology, New Taipei City, Taiwan.

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http://dx.doi.org/10.1158/1535-7163.MCT-13-0700DOI Listing
June 2014

T-Coffee: Tree-based consistency objective function for alignment evaluation.

Methods Mol Biol 2014 ;1079:117-29

Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Universitat Pompeu Fabra, Barcelona, Spain.

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http://dx.doi.org/10.1007/978-1-62703-646-7_7DOI Listing
May 2014

Characterization of the biological activity of a potent small molecule Hec1 inhibitor TAI-1.

J Exp Clin Cancer Res 2014 Jan 9;33. Epub 2014 Jan 9.

Taivex Therapeutics Corporation, 17th Floor, No, 3, Yuanqu Street, Nangang District, Taipei City 115, Taiwan.

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http://dx.doi.org/10.1186/1756-9966-33-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3895848PMC
January 2014

Antroquinonol mitigates an accelerated and progressive IgA nephropathy model in mice by activating the Nrf2 pathway and inhibiting T cells and NLRP3 inflammasome.

Free Radic Biol Med 2013 Aug 6;61:285-97. Epub 2013 Apr 6.

Graduate Institute of Life Sciences, National Defense Medical Center, Taipei, Taiwan, ROC; Department of Pathology, Tri-Service General Hospital, National Defense Medical Center, Taipei, Taiwan, ROC. Electronic address:

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http://dx.doi.org/10.1016/j.freeradbiomed.2013.03.024DOI Listing
August 2013

Pulmonary melioidosis complicated by pneumothorax.

Ann Thorac Surg 2013 Jun;95(6):e159

Division of Pulmonary and Critical Care Medicine, Chia-Yi Christian Hospital, Chia-Yi, Taiwan.

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http://dx.doi.org/10.1016/j.athoracsur.2012.12.064DOI Listing
June 2013

The role of video-assisted thoracoscopic surgery in therapeutic lung resection for pulmonary tuberculosis.

Ann Thorac Surg 2013 Jan 28;95(1):257-63. Epub 2012 Nov 28.

Division of Thoracic Surgery, Department of Surgery, National Cheng Kung University Hospital, College of Medical College, National Cheng Kung University, Tainan, Taiwan.

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http://dx.doi.org/10.1016/j.athoracsur.2012.09.034DOI Listing
January 2013

An Extract of Antrodia camphorata Mycelia Attenuates the Progression of Nephritis in Systemic Lupus Erythematosus-Prone NZB/W F1 Mice.

Evid Based Complement Alternat Med 2011 17;2011:465894. Epub 2011 Feb 17.

Division of Research and Development, Development Center for Biotechnology, Xizhi City, Taipei County, Taiwan 221, Taiwan.

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http://dx.doi.org/10.1093/ecam/nen057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3136357PMC
August 2012

Carthamus tinctorius Enhances the Antitumor Activity of Dendritic Cell Vaccines via Polarization toward Th1 Cytokines and Increase of Cytotoxic T Lymphocytes.

Evid Based Complement Alternat Med 2011 3;2011:274858. Epub 2011 Jan 3.

Division of Research and Development, Development Center for Biotechnology, Xizhi City, Taipei County, Taiwan 221, R.O.C., Taiwan.

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http://dx.doi.org/10.1093/ecam/nen068DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3096489PMC
August 2012

An unusual cause of hemoptysis in a young woman.

Ann Thorac Surg 2012 May;93(5):1734

Division of Thoracic Surgery, Chia-Yi Christian Hospital, and Department of Respiratory Therapy, China Medical University, Chiayi, Taiwan.

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http://dx.doi.org/10.1016/j.athoracsur.2011.10.002DOI Listing
May 2012

Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee.

BMC Bioinformatics 2012 Mar 28;13 Suppl 4:S1. Epub 2012 Mar 28.

Bioinformatics and Genomics program, Centre for Genomic Regulation (CRG) and UPF, Barcelona 08003, Spain.

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http://dx.doi.org/10.1186/1471-2105-13-S4-S1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3303701PMC
March 2012

Antroquinonol differentially modulates T cell activity and reduces interleukin-18 production, but enhances Nrf2 activation, in murine accelerated severe lupus nephritis.

Arthritis Rheum 2012 Jan;64(1):232-42

Department of Pathology, Tri-Service General Hospital, National Defense Medical Center, and Development Center for Biotechnology, Taipei, Taiwan, Republic of China.

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http://dx.doi.org/10.1002/art.33328DOI Listing
January 2012

Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures.

Nat Protoc 2011 Nov;6(11):1669-82

Comparative Bioinformatics Group, Bioinformatics and Genomics Program, Centre for Genomic Regulation (CRG), Universitat Pompeu Fabra, Barcelona, Spain.

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http://dx.doi.org/10.1038/nprot.2011.393DOI Listing
November 2011

Therapeutic potential of DCB-SLE1, an extract of a mixture of Chinese medicinal herbs, for severe lupus nephritis.

Am J Physiol Renal Physiol 2011 Oct 15;301(4):F751-64. Epub 2011 Jun 15.

Graduate Institute of Medical Sciences, Tri-Service General Hospital, Taipei, Taiwan, ROC.

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http://dx.doi.org/10.1152/ajprenal.00706.2010DOI Listing
October 2011

Epigallocatechin-3-gallate prevents lupus nephritis development in mice via enhancing the Nrf2 antioxidant pathway and inhibiting NLRP3 inflammasome activation.

Free Radic Biol Med 2011 Aug 23;51(3):744-54. Epub 2011 May 23.

Graduate Institute of Medical Sciences, National Defense Medical Center, Taipei, Taiwan, Republic of China.

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http://dx.doi.org/10.1016/j.freeradbiomed.2011.05.016DOI Listing
August 2011

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension.

Nucleic Acids Res 2011 Jul 9;39(Web Server issue):W13-7. Epub 2011 May 9.

Centre For Genomic Regulation (Pompeu Fabra University), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain.

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http://dx.doi.org/10.1093/nar/gkr245DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125728PMC
July 2011

Thymic neuroendocrine carcinoma and thymoma are both associated with increased risk of extrathymic malignancy: a 20-year review of a single institution.

Ann Thorac Surg 2011 Jan;91(1):219-25

Division of Thoracic Surgery, Department of Surgery, National Cheng Kung University Hospital, and Department of Emergency Medicine, National Cheng Kung University, Tainan, Taiwan.

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http://dx.doi.org/10.1016/j.athoracsur.2010.09.025DOI Listing
January 2011

The relationship between energy status and AMP-activated protein kinase in human H460 lung cancer cells.

Cell Biochem Funct 2010 Oct;28(7):549-54

Department of Physical Education, National Taiwan Normal University, Taipei City, ROC.

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http://doi.wiley.com/10.1002/cbf.1685
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http://dx.doi.org/10.1002/cbf.1685DOI Listing
October 2010

The Anti-hepatitis B Virus Activity of Boehmeria nivea Extract in HBV-viremia SCID Mice.

Evid Based Complement Alternat Med 2010 Jun 7;7(2):189-95. Epub 2008 Jan 7.

Division of Research and Development, Development Center for Biotechnology, Xizhi City, Taipei County, Taiwan 221, Department of Life Sciences and Institute of Biotechnology, National Tsing Hua University, Hsinchu, Taiwan 30013 and Department of Bioresources, Da-Yeh University, Changhua, Taiwan 515, R.O.C.

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http://www.hindawi.com/journals/ecam/2010/930105/
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http://dx.doi.org/10.1093/ecam/nem180DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2862930PMC
June 2010

Potential Use of Plectranthus amboinicus in the Treatment of Rheumatoid Arthritis.

Evid Based Complement Alternat Med 2010 Mar 23;7(1):115-20. Epub 2007 Nov 23.

Chinese Herbal Medicine Program, Division of Research and Development, Development Center for Biotechnology, Taipei, Taiwan, ROC.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2816374PMC
March 2010

Angiogenetic biomarkers in non-small cell lung cancer with malignant pleural effusion: correlations with patient survival and pleural effusion control.

Lung Cancer 2009 Sep 21;65(3):371-6. Epub 2009 Jan 21.

Department of Emergency, College of Medicine, National Cheng Kung University, Tainan, Taiwan.

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http://dx.doi.org/10.1016/j.lungcan.2008.12.007DOI Listing
September 2009

PSLDoc: Protein subcellular localization prediction based on gapped-dipeptides and probabilistic latent semantic analysis.

Proteins 2008 Aug;72(2):693-710

Bioinformatics Lab, Institute of Information Science, Academia Sinica, Taipei, Taiwan.

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http://dx.doi.org/10.1002/prot.21944DOI Listing
August 2008

Acid corrosive injury in patients with a history of partial gastrectomy: outcome analysis.

Dig Surg 2007 15;24(3):202-7. Epub 2007 May 15.

Division of Thoracic Surgery, Department of Surgery, Medical College, National Cheng Kung University, Tainan, Taiwan.

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http://dx.doi.org/10.1159/000102900DOI Listing
November 2007

Ileocolon graft pedicled on ileocolic artery: an alternative esophageal substitute for corrosive injury.

Ann Thorac Surg 2007 Jul;84(1):295-6

Surgical Department, National Cheng-Kung University Hospital, Tainan, Taiwan.

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http://dx.doi.org/10.1016/j.athoracsur.2007.02.065DOI Listing
July 2007

Cervical ectopic thymoma.

J Thorac Cardiovasc Surg 2007 Jun;133(6):1658-9

Department of Emergency, Division of Thoracic Surgery, National Cheng Kung University Hospital, Tainan, Taiwan.

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http://dx.doi.org/10.1016/j.jtcvs.2007.01.037DOI Listing
June 2007

Protection from oxidative damage using Bidens pilosa extracts in normal human erythrocytes.

Food Chem Toxicol 2006 Sep 25;44(9):1513-21. Epub 2006 Apr 25.

Institute of Nutrition, China Medical University, Taichung, Taiwan.

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September 2006

Inhibition of hepatitis B virus production by Boehmeria nivea root extract in HepG2 2.2.15 cells.

World J Gastroenterol 2006 Sep;12(35):5721-5

Division of Research and Development, Development Center for Biotechnology, Xizhi City, Taipei County, Taiwan 221, China.

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http://dx.doi.org/10.3748/wjg.v12.i35.5721DOI Listing
September 2006

RIBRA--an error-tolerant algorithm for the NMR backbone assignment problem.

J Comput Biol 2006 Mar;13(2):229-44

Institute of Information Science, Nankang, Taipei, Taiwan.

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March 2006

Myasthenia gravis developed 30 months after resection of recurrent thymoma.

Eur J Cardiothorac Surg 2006 Feb 11;29(2):268; author reply 268-9. Epub 2006 Jan 11.

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February 2006

HYPROSP II--a knowledge-based hybrid method for protein secondary structure prediction based on local prediction confidence.

Bioinformatics 2005 Aug 2;21(15):3227-33. Epub 2005 Jun 2.

Institute of Information Science, Academia Sinica, Taipei 115, Taiwan.

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August 2005

GANA--a genetic algorithm for NMR backbone resonance assignment.

Nucleic Acids Res 2005 10;33(14):4593-601. Epub 2005 Aug 10.

Institute of Information Science, Academia Sinica, Taipei, Taiwan.

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http://dx.doi.org/10.1093/nar/gki768DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1184223PMC
August 2005

Constrained multiple sequence alignment tool development and its application to RNase family alignment.

Proc IEEE Comput Soc Bioinform Conf 2002 ;1:127-37

Department of Computer Science, National Tsing Hua University, Hsinchu, Taiwan, R.O.C.

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May 2005

HYPROSP: a hybrid protein secondary structure prediction algorithm--a knowledge-based approach.

Nucleic Acids Res 2004 24;32(17):5059-65. Epub 2004 Sep 24.

Institute of Information Science, Academia Sinica, Taipei, Taiwan.

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http://dx.doi.org/10.1093/nar/gkh836DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC521652PMC
October 2004

Computed tomographic assessment of the surgical risks associated with fibrocavernous pulmonary tuberculosis.

Surg Today 2004 ;34(3):204-8

Department of Surgery, National Cheng Kung University Hospital, College of Medicine, National Cheng Kung University, 138 Sheng-li Road, Tainan, Taiwan.

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http://dx.doi.org/10.1007/s00595-003-2692-2DOI Listing
June 2004

Flow cytoenzymology of intracellular tartrate-resistant acid phosphatase.

J Histochem Cytochem 2003 Sep;51(9):1131-7

Special Hematology Laboratory, Veterans Affairs Medical Center, Louisville, Kentucky 40206, USA.

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http://dx.doi.org/10.1177/002215540305100903DOI Listing
September 2003

Constrained multiple sequence alignment tool development and its application to RNase family alignment.

J Bioinform Comput Biol 2003 Jul;1(2):267-87

Department of Computer Science, National Tsing Hua University, Hsinchu 300, Taiwan, ROC.

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http://dx.doi.org/10.1142/s0219720003000095DOI Listing
July 2003