Jia Qian Wu

Jia Qian Wu

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Jia Qian Wu

Jia Qian Wu

Publications by authors named "Jia Qian Wu"

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21Publications

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Brain Region-Specific Gene Signatures Revealed by Distinct Astrocyte Subpopulations Unveil Links to Glioma and Neurodegenerative Diseases.

eNeuro 2019 Mar-Apr;6(2). Epub 2019 Apr 2.

The Vivian L. Smith Department of Neurosurgery, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, Texas 77030.

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http://eneuro.org/lookup/doi/10.1523/ENEURO.0288-18.2019
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http://dx.doi.org/10.1523/ENEURO.0288-18.2019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6449165PMC
April 2019

An integrated global regulatory network of hematopoietic precursor cell self-renewal and differentiation.

Integr Biol (Camb) 2018 07;10(7):390-405

The Vivian L. Smith Department of Neurosurgery, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA.

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http://dx.doi.org/10.1039/c8ib00059jDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6047913PMC
July 2018

Identifying Transcription Factor Olig2 Genomic Binding Sites in Acutely Purified PDGFRα+ Cells by Low-cell Chromatin Immunoprecipitation Sequencing Analysis.

J Vis Exp 2018 04 16(134). Epub 2018 Apr 16.

The Vivian L. Smith Department of Neurosurgery, Center for Stem Cell and Regenerative Medicine, University of Texas Health Science Center;

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http://dx.doi.org/10.3791/57547DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5933511PMC
April 2018

Single-cell RNA-sequencing of the brain.

Clin Transl Med 2017 Dec 8;6(1):20. Epub 2017 Jun 8.

The Vivian L. Smith Department of Neurosurgery, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s40169-017-0150-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5465230PMC
December 2017

The systematic analysis of coding and long non-coding RNAs in the sub-chronic and chronic stages of spinal cord injury.

Sci Rep 2017 01 20;7:41008. Epub 2017 Jan 20.

The Vivian L. Smith Department of Neurosurgery, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA.

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http://dx.doi.org/10.1038/srep41008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5247719PMC
January 2017

Building an RNA Sequencing Transcriptome of the Central Nervous System.

Neuroscientist 2016 12 13;22(6):579-592. Epub 2015 Oct 13.

The Vivian L. Smith Department of Neurosurgery, University of Texas Medical School at Houston, Houston, TX, USA

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http://dx.doi.org/10.1177/1073858415610541DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4833695PMC
December 2016

Comprehensive Identification of Long Non-coding RNAs in Purified Cell Types from the Brain Reveals Functional LncRNA in OPC Fate Determination.

PLoS Genet 2015 Dec 18;11(12):e1005669. Epub 2015 Dec 18.

The Vivian L. Smith Department of Neurosurgery, The University of Texas Health Science Center at Houston Medical School, Houston, Texas, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1005669DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4980008PMC
December 2015

Systematic discovery of regulated and conserved alternative exons in the mammalian brain reveals NMD modulating chromatin regulators.

Proc Natl Acad Sci U S A 2015 Mar 3;112(11):3445-50. Epub 2015 Mar 3.

Department of Systems Biology, Department of Biochemistry and Molecular Biophysics, Center for Motor Neuron Biology and Disease, Columbia University, New York, NY 10032;

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http://dx.doi.org/10.1073/pnas.1502849112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4371929PMC
March 2015

Identification of key factors regulating self-renewal and differentiation in EML hematopoietic precursor cells by RNA-sequencing analysis.

J Vis Exp 2014 Nov 11(93):e52104. Epub 2014 Nov 11.

The Vivian L. Smith Department of Neurosurgery, Center for Stem Cell and Regenerative Medicine, University of Texas Health Science Center, The University of Texas Graduate School of Biomedical Sciences at Houston;

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http://dx.doi.org/10.3791/52104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4353975PMC
November 2014

RNA polymerase II stalling: loading at the start prepares genes for a sprint.

Genome Biol 2008 2;9(5):220. Epub 2008 May 2.

Molecular, Cellular and Developmental Biology Department, Yale University, PO Box 208103, New Haven, CT 06511, USA.

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http://dx.doi.org/10.1186/gb-2008-9-5-220DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2441479PMC
July 2008

Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome.

Genome Biol 2008 Jan 3;9(1):R3. Epub 2008 Jan 3.

Molecular, Cellular and Developmental Biology Department, KBT918, Yale University, New Haven, Connecticut 06511, USA.

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http://dx.doi.org/10.1186/gb-2008-9-1-r3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2395237PMC
January 2008

A tale of two templates: automatically resolving double traces has many applications, including efficient PCR-based elucidation of alternative splices.

Genome Res 2007 Feb 8;17(2):212-8. Epub 2007 Jan 8.

Laboratory for Computational Genomics and Department of Computer Science, Washington University, St. Louis, Missouri 63130, USA.

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http://www.genome.org/cgi/doi/10.1101/gr.5661407
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http://dx.doi.org/10.1101/gr.5661407DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1781353PMC
February 2007

Concatenation cDNA sequencing for transcriptome analysis.

C R Biol 2003 Oct-Nov;326(10-11):971-7

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.1016/j.crvi.2003.09.032DOI Listing
May 2004

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:
Richard A Gibbs George M Weinstock Michael L Metzker Donna M Muzny Erica J Sodergren Steven Scherer Graham Scott David Steffen Kim C Worley Paula E Burch Geoffrey Okwuonu Sandra Hines Lora Lewis Christine DeRamo Oliver Delgado Shannon Dugan-Rocha George Miner Margaret Morgan Alicia Hawes Rachel Gill Celera Robert A Holt Mark D Adams Peter G Amanatides Holly Baden-Tillson Mary Barnstead Soo Chin Cheryl A Evans Steve Ferriera Carl Fosler Anna Glodek Zhiping Gu Don Jennings Cheryl L Kraft Trixie Nguyen Cynthia M Pfannkoch Cynthia Sitter Granger G Sutton J Craig Venter Trevor Woodage Douglas Smith Hong-Mei Lee Erik Gustafson Patrick Cahill Arnold Kana Lynn Doucette-Stamm Keith Weinstock Kim Fechtel Robert B Weiss Diane M Dunn Eric D Green Robert W Blakesley Gerard G Bouffard Pieter J De Jong Kazutoyo Osoegawa Baoli Zhu Marco Marra Jacqueline Schein Ian Bosdet Chris Fjell Steven Jones Martin Krzywinski Carrie Mathewson Asim Siddiqui Natasja Wye John McPherson Shaying Zhao Claire M Fraser Jyoti Shetty Sofiya Shatsman Keita Geer Yixin Chen Sofyia Abramzon William C Nierman Paul H Havlak Rui Chen K James Durbin Amy Egan Yanru Ren Xing-Zhi Song Bingshan Li Yue Liu Xiang Qin Simon Cawley Kim C Worley A J Cooney Lisa M D'Souza Kirt Martin Jia Qian Wu Manuel L Gonzalez-Garay Andrew R Jackson Kenneth J Kalafus Michael P McLeod Aleksandar Milosavljevic Davinder Virk Andrei Volkov David A Wheeler Zhengdong Zhang Jeffrey A Bailey Evan E Eichler Eray Tuzun Ewan Birney Emmanuel Mongin Abel Ureta-Vidal Cara Woodwark Evgeny Zdobnov Peer Bork Mikita Suyama David Torrents Marina Alexandersson Barbara J Trask Janet M Young Hui Huang Huajun Wang Heming Xing Sue Daniels Darryl Gietzen Jeanette Schmidt Kristian Stevens Ursula Vitt Jim Wingrove Francisco Camara M Mar Albà Josep F Abril Roderic Guigo Arian Smit Inna Dubchak Edward M Rubin Olivier Couronne Alexander Poliakov Norbert Hübner Detlev Ganten Claudia Goesele Oliver Hummel Thomas Kreitler Young-Ae Lee Jan Monti Herbert Schulz Heike Zimdahl Heinz Himmelbauer Hans Lehrach Howard J Jacob Susan Bromberg Jo Gullings-Handley Michael I Jensen-Seaman Anne E Kwitek Jozef Lazar Dean Pasko Peter J Tonellato Simon Twigger Chris P Ponting Jose M Duarte Stephen Rice Leo Goodstadt Scott A Beatson Richard D Emes Eitan E Winter Caleb Webber Petra Brandt Gerald Nyakatura Margaret Adetobi Francesca Chiaromonte Laura Elnitski Pallavi Eswara Ross C Hardison Minmei Hou Diana Kolbe Kateryna Makova Webb Miller Anton Nekrutenko Cathy Riemer Scott Schwartz James Taylor Shan Yang Yi Zhang Klaus Lindpaintner T Dan Andrews Mario Caccamo Michele Clamp Laura Clarke Valerie Curwen Richard Durbin Eduardo Eyras Stephen M Searle Gregory M Cooper Serafim Batzoglou Michael Brudno Arend Sidow Eric A Stone J Craig Venter Bret A Payseur Guillaume Bourque Carlos López-Otín Xose S Puente Kushal Chakrabarti Sourav Chatterji Colin Dewey Lior Pachter Nicolas Bray Von Bing Yap Anat Caspi Glenn Tesler Pavel A Pevzner David Haussler Krishna M Roskin Robert Baertsch Hiram Clawson Terrence S Furey Angie S Hinrichs Donna Karolchik William J Kent Kate R Rosenbloom Heather Trumbower Matt Weirauch David N Cooper Peter D Stenson Bin Ma Michael Brent Manimozhiyan Arumugam David Shteynberg Richard R Copley Martin S Taylor Harold Riethman Uma Mudunuri Jane Peterson Mark Guyer Adam Felsenfeld Susan Old Stephen Mockrin Francis Collins

Nature 2004 Apr;428(6982):493-521

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, Texas 77030, USA. http://www.hgsc.bcm.tmc.edu

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http://dx.doi.org/10.1038/nature02426DOI Listing
April 2004

Accurate identification of novel human genes through simultaneous gene prediction in human, mouse, and rat.

Genome Res 2004 Apr;14(4):661-4

Department of Electrical Engineering, University of California-Berkeley, Berkeley, California 94720, USA.

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http://dx.doi.org/10.1101/gr.1939804DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC383310PMC
April 2004

Identification of rat genes by TWINSCAN gene prediction, RT-PCR, and direct sequencing.

Genome Res 2004 Apr;14(4):665-71

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1101/gr.1959604DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC383311PMC
April 2004

Large-scale RT-PCR recovery of full-length cDNA clones.

Biotechniques 2004 Apr;36(4):690-6, 698-700

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.2144/04364DD03DOI Listing
April 2004

Diversity of TITAN functions in Arabidopsis seed development.

Plant Physiol 2002 Jan;128(1):38-51

Department of Botany, Oklahoma State University, Stillwater, Oklahoma 74078, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC148942PMC
January 2002