Jesper B Bramsen

Jesper B Bramsen

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Jesper B Bramsen

Jesper B Bramsen

Publications by authors named "Jesper B Bramsen"

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25Publications

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An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes.

Cell Syst 2017 06 7;4(6):587-599.e4. Epub 2017 Jun 7.

Proteomics Program, Faculty of Health and Medical Sciences, Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2017.05.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5493283PMC
June 2017

Putative cis-regulatory drivers in colorectal cancer.

Nature 2014 Aug 23;512(7512):87-90. Epub 2014 Jul 23.

1] Department of Genetic Medicine and Development, University of Geneva Medical School, 1211 Geneva, Switzerland [2] Institute for Genetics and Genomics in Geneva (iGE3), University of Geneva, 1211 Geneva, Switzerland [3] Swiss Institute of Bioinformatics, 1211 Geneva, Switzerland.

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http://dx.doi.org/10.1038/nature13602DOI Listing
August 2014

Biological activity and biotechnological aspects of locked nucleic acids.

Adv Genet 2013 ;82:47-107

Clinical Research Center, Department of Laboratory Medicine, Karolinska Institutet, Novum, Huddinge, Stockholm, Sweden.

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http://dx.doi.org/10.1016/B978-0-12-407676-1.00002-0DOI Listing
August 2013

Natural RNA circles function as efficient microRNA sponges.

Nature 2013 Mar 27;495(7441):384-8. Epub 2013 Feb 27.

Department of Molecular Biology and Genetics, Aarhus University, C.F. Møllers Alle 3, 8000C, Aarhus, Denmark.

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http://dx.doi.org/10.1038/nature11993DOI Listing
March 2013

Engineering small interfering RNAs by strategic chemical modification.

Methods Mol Biol 2013 ;942:87-109

Department of Molecular Biology and Genetics, Interdisciplinary Nanoscience Center (iNANO), University of Aarhus, Aarhus, Denmark.

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http://dx.doi.org/10.1007/978-1-62703-119-6_5DOI Listing
February 2013

In vivo knockdown of Brachyury results in skeletal defects and urorectal malformations resembling caudal regression syndrome.

Dev Biol 2012 Dec 18;372(1):55-67. Epub 2012 Sep 18.

Max Planck Institute for Molecular Genetics, Developmental Genetics Department, Ihnestraße 73, 14195 Berlin, Germany.

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http://dx.doi.org/10.1016/j.ydbio.2012.09.003DOI Listing
December 2012

Development of Therapeutic-Grade Small Interfering RNAs by Chemical Engineering.

Front Genet 2012 20;3:154. Epub 2012 Aug 20.

Interdisciplinary Nanoscience Center, Department of Molecular Biology and Genetics, Aarhus University Aarhus C, Denmark.

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http://dx.doi.org/10.3389/fgene.2012.00154DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3422727PMC
October 2012

Spatio-temporal regulation of ADAR editing during development in porcine neural tissues.

RNA Biol 2012 Aug 1;9(8):1054-65. Epub 2012 Aug 1.

Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark.

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http://dx.doi.org/10.4161/rna.21082DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3551860PMC
August 2012

Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis.

RNA Biol 2011 May-Jun;8(3):378-83. Epub 2011 May 1.

Department of Molecular Biology, Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Aarhus, Denmark.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218508PMC
http://dx.doi.org/10.4161/rna.8.3.14333DOI Listing
May 2012

miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA.

EMBO J 2011 Sep 30;30(21):4414-22. Epub 2011 Sep 30.

Department of Molecular Biology, Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Aarhus, Denmark.

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http://dx.doi.org/10.1038/emboj.2011.359DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3230379PMC
September 2011

Chemical modification of small interfering RNA.

Methods Mol Biol 2011 ;721:77-103

Department of Molecular Biology, Interdisciplinary Nanoscience Center (iNANO), University of Aarhus, Aarhus, Denmark.

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http://dx.doi.org/10.1007/978-1-61779-037-9_5DOI Listing
July 2011

A screen of chemical modifications identifies position-specific modification by UNA to most potently reduce siRNA off-target effects.

Nucleic Acids Res 2010 Sep 7;38(17):5761-73. Epub 2010 May 7.

Department of Molecular Biology, University of Aarhus, Arhus, Nucleic Acid Center, Department of Physics and Chemistry, University of Southern Denmark, Odense, Denmark.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkq341DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2943616PMC
September 2010

Utilization of unlocked nucleic acid (UNA) to enhance siRNA performance in vitro and in vivo.

Mol Biosyst 2010 May 9;6(5):862-70. Epub 2010 Feb 9.

Department of Molecular Biology, Aarhus University, DK-8000 Aarhus, Denmark.

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http://dx.doi.org/10.1039/b918869jDOI Listing
May 2010

Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions.

Genome Res 2008 Feb 20;18(2):242-51. Epub 2007 Dec 20.

Section for Genetics and Bioinformatics, IBVH, Faculty of Life Sciences, University of Copenhagen, 1870 Frederiksberg C, Denmark.

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http://dx.doi.org/10.1101/gr.6887408DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2203622PMC
February 2008

Synthesis of 2'-O-modified adenosine building blocks and application for RNA interference.

Bioorg Med Chem 2008 Jan 15;16(1):518-29. Epub 2007 Sep 15.

Institute for Organic Chemistry, and Chemical Biology, Johann Wolfgang Goethe-University, Max-von-Laue-Strasse 7, 60438 Frankfurt am Main, Germany.

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http://dx.doi.org/10.1016/j.bmc.2007.09.019DOI Listing
January 2008

Improved silencing properties using small internally segmented interfering RNAs.

Nucleic Acids Res 2007 28;35(17):5886-97. Epub 2007 Aug 28.

Department of Molecular Biology, University of Aarhus, DK-8000, Aarhus C, Denmark.

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http://dx.doi.org/10.1093/nar/gkm548DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2034465PMC
November 2007