Jerome Gouzy

Jerome Gouzy

UNVERIFIED PROFILE

Are you Jerome Gouzy?   Register this Author

Register author
Jerome Gouzy

Jerome Gouzy

Publications by authors named "Jerome Gouzy"

Are you Jerome Gouzy?   Register this Author

75Publications

3064Reads

43Profile Views

Whole-genome sequencing reveals recent and frequent genetic recombination between clonal lineages of Cryphonectria parasitica in western Europe.

Fungal Genet Biol 2019 09 5;130:122-133. Epub 2019 Jun 5.

BIOGECO, INRA, Université de Bordeaux, 69 route d'Arcachon, Cestas F-33610, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.fgb.2019.06.002DOI Listing
September 2019

EuGene: An Automated Integrative Gene Finder for Eukaryotes and Prokaryotes.

Methods Mol Biol 2019 ;1962:97-120

Unité de Mathématiques et Informatique Appliquées de Toulouse (MIAT), Université de Toulouse, INRA, Castanet-Tolosan, France.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/978-1-4939-9173-0_6
Publisher Site
http://dx.doi.org/10.1007/978-1-4939-9173-0_6DOI Listing
August 2019

Population Genome Sequencing of the Scab Fungal Species , , and .

G3 (Bethesda) 2019 08 8;9(8):2405-2414. Epub 2019 Aug 8.

UMR 1345 Institut de Recherche en Horticulture et Semences (IRHS), INRA, Université d'Angers, Agrocampus-Ouest, SFR 4207 QuaSaV, 49071, Beaucouzé, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1534/g3.119.400047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6686934PMC
August 2019

Evolutionary strata on young mating-type chromosomes despite the lack of sexual antagonism.

Proc Natl Acad Sci U S A 2017 07 19;114(27):7067-7072. Epub 2017 Jun 19.

Ecologie Systématique Evolution, Univ. Paris Sud, AgroParisTech, CNRS, Université Paris-Saclay, 91400 Orsay, France;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1701658114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5502610PMC
July 2017

Genome-wide association studies with proteomics data reveal genes important for synthesis, transport and packaging of globulins in legume seeds.

New Phytol 2017 Jun 21;214(4):1597-1613. Epub 2017 Mar 21.

Agroécologie, AgroSup Dijon, Institut National de la Recherche Agronomique (INRA), Université Bourgogne Franche-Comté, 21000, Dijon, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/nph.14500DOI Listing
June 2017

Improved methods and resources for paramecium genomics: transcription units, gene annotation and gene expression.

BMC Genomics 2017 06 26;18(1):483. Epub 2017 Jun 26.

Institute for Integrative Biology of the Cell (I2BC), CNRS, CEA, Univ. Paris-Sud, Université Paris-Saclay, 91198, Gif-sur-Yvette CEDEX, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12864-017-3887-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5485702PMC
June 2017

RADIS: analysis of RAD-seq data for interspecific phylogeny.

Bioinformatics 2016 10 16;32(19):3027-8. Epub 2016 Jun 16.

INRA, UMR441 LIPM, F31326 Castanet Tolosan, France CNRS, UMR2594 LIPM, F31326 Castanet Tolosan, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btw352DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5039923PMC
October 2016

Extraction of high-molecular-weight genomic DNA for long-read sequencing of single molecules.

Biotechniques 2016 10 1;61(4):203-205. Epub 2016 Oct 1.

LIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.2144/000114460DOI Listing
October 2016

A Laser Dissection-RNAseq Analysis Highlights the Activation of Cytokinin Pathways by Nod Factors in the Medicago truncatula Root Epidermis.

Plant Physiol 2016 07 23;171(3):2256-76. Epub 2016 May 23.

LIPM, Université de Toulouse, Institut National de la Recherche Agronomique, Centre National de la Recherche Scientifique, 31326 Castanet-Tolosan, France (M.-F.J., N.R., O.C., A.L., S.M., B.R., L.C., E.S., J.G., P.G.);INPT-Université de Toulouse, ENSAT, 31326 Castanet-Tolosan, France (M.-F.J.);Institute of Plant Sciences-Paris Saclay University, Centre National de la Recherche Scientifique/Institut National de la Recherche Agronomique/Universités Paris-Sud/Paris-Diderot/d'Evry, 91190 Gif-sur-Yvette, France (S.B., M.B., F.F.);Biology Department, Trent University, Peterborough, Ontario, Canada K9J 7B8 (A.K., R.J.N.E.); andDepartment of Plant Genetics, Physiology, and Biotechnology, University of Technology and Life Sciences, 85-789 Bydgoszcz, Poland (A.K.)

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1104/pp.16.00711DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4936592PMC
July 2016

Adaptive Horizontal Gene Transfers between Multiple Cheese-Associated Fungi.

Curr Biol 2015 Oct 24;25(19):2562-9. Epub 2015 Sep 24.

Ecologie, Systématique et Evolution, UMR8079, Univ. Paris-Sud, 91405 Orsay, France; Ecologie, Systématique et Evolution, UMR8079, CNRS, 91405 Orsay, France. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cub.2015.08.025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4598740PMC
October 2015

Chaos of Rearrangements in the Mating-Type Chromosomes of the Anther-Smut Fungus Microbotryum lychnidis-dioicae.

Genetics 2015 Aug 3;200(4):1275-84. Epub 2015 Jun 3.

Ecologie, Systématique et Evolution, Univ Paris-Sud, 91405 Orsay, France Centre National de la Recherche Scientifique, F-91405 Orsay, France

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1534/genetics.115.177709DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4574255PMC
August 2015

A Medicago truncatula rdr6 allele impairs transgene silencing and endogenous phased siRNA production but not development.

Plant Biotechnol J 2014 Dec 24;12(9):1308-18. Epub 2014 Jul 24.

CNRS, Institut des Sciences du Végétal (ISV), UPR2355, Labex SPS Saclay Plant Sciences, Gif-sur-Yvette Cedex, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/pbi.12230DOI Listing
December 2014

Multihost experimental evolution of the pathogen Ralstonia solanacearum unveils genes involved in adaptation to plants.

Mol Biol Evol 2014 Nov 1;31(11):2913-28. Epub 2014 Aug 1.

INRA, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR441, Castanet-Tolosan, France CNRS, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR2594, Castanet-Tolosan, France

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/molbev/msu229DOI Listing
November 2014

EuGene-PP: a next-generation automated annotation pipeline for prokaryotic genomes.

Bioinformatics 2014 Sep 30;30(18):2659-61. Epub 2014 May 30.

Laboratoire Interactions Plantes Micro-organismes (LIPM) UMR441/2594, INRA/CNRS, F-31320 and INRA, Unité de Mathématiques et Informatique Appliques de Toulouse, UR 875, Castanet-Tolosan F-31326, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btu366DOI Listing
September 2014

An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing.

Plant J 2014 Mar 24;77(6):817-37. Epub 2014 Feb 24.

INRA, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR441, Castanet-Tolosan, F-31326, France; CNRS, Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR2594, Castanet-Tolosan, F-31326, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/tpj.12442DOI Listing
March 2014

Draft Genome Sequence and Annotation of the Entomopathogenic Bacterium Xenorhabdus nematophila Strain F1.

Genome Announc 2013 Jun 20;1(3). Epub 2013 Jun 20.

Diversité, Génomique et Interactions Microorganismes-Insectes (DGIMI) Institut National de la Recherche Agronomique, Montpellier, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/genomeA.00342-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3707590PMC
June 2013

Combined linkage and association mapping of flowering time in Sunflower (Helianthus annuus L.).

Theor Appl Genet 2013 May 23;126(5):1337-56. Epub 2013 Feb 23.

Laboratoire des Interactions Plantes-Microorganismes (LIPM), INRA, UMR441, 31326 Castanet-Tolosan, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00122-013-2056-2DOI Listing
May 2013

Single-nucleotide polymorphism discovery and diversity in the model legume Medicago truncatula.

Mol Ecol Resour 2013 Jan 27;13(1):84-95. Epub 2012 Sep 27.

INRA, UMR AGAP, 2 place Pierre Viala, F-34060, Montpellier Cedex 1, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/1755-0998.12021DOI Listing
January 2013

Transcriptome database resource and gene expression atlas for the rose.

BMC Genomics 2012 Nov 20;13:638. Epub 2012 Nov 20.

Reproduction et Développement des Plantes UMR INRA-CNRS- Université Lyon 1-ENSL, Ecole Normale Supérieure, 46 allée d'Italie, Lyon Cedex 07 69364, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-13-638DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3518227PMC
November 2012

Consensus mapping of major resistance genes and independent QTL for quantitative resistance to sunflower downy mildew.

Theor Appl Genet 2012 Sep 11;125(5):909-20. Epub 2012 May 11.

Laboratoire des Interactions Plantes-Microorganismes (LIPM), INRA, UMR441, 31326 Castanet-Tolosan, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00122-012-1882-yDOI Listing
September 2012

The Medicago genome provides insight into the evolution of rhizobial symbioses.

Authors:
Nevin D Young Frédéric Debellé Giles E D Oldroyd Rene Geurts Steven B Cannon Michael K Udvardi Vagner A Benedito Klaus F X Mayer Jérôme Gouzy Heiko Schoof Yves Van de Peer Sebastian Proost Douglas R Cook Blake C Meyers Manuel Spannagl Foo Cheung Stéphane De Mita Vivek Krishnakumar Heidrun Gundlach Shiguo Zhou Joann Mudge Arvind K Bharti Jeremy D Murray Marina A Naoumkina Benjamin Rosen Kevin A T Silverstein Haibao Tang Stephane Rombauts Patrick X Zhao Peng Zhou Valérie Barbe Philippe Bardou Michael Bechner Arnaud Bellec Anne Berger Hélène Bergès Shelby Bidwell Ton Bisseling Nathalie Choisne Arnaud Couloux Roxanne Denny Shweta Deshpande Xinbin Dai Jeff J Doyle Anne-Marie Dudez Andrew D Farmer Stéphanie Fouteau Carolien Franken Chrystel Gibelin John Gish Steven Goldstein Alvaro J González Pamela J Green Asis Hallab Marijke Hartog Axin Hua Sean J Humphray Dong-Hoon Jeong Yi Jing Anika Jöcker Steve M Kenton Dong-Jin Kim Kathrin Klee Hongshing Lai Chunting Lang Shaoping Lin Simone L Macmil Ghislaine Magdelenat Lucy Matthews Jamison McCorrison Erin L Monaghan Jeong-Hwan Mun Fares Z Najar Christine Nicholson Céline Noirot Majesta O'Bleness Charles R Paule Julie Poulain Florent Prion Baifang Qin Chunmei Qu Ernest F Retzel Claire Riddle Erika Sallet Sylvie Samain Nicolas Samson Iryna Sanders Olivier Saurat Claude Scarpelli Thomas Schiex Béatrice Segurens Andrew J Severin D Janine Sherrier Ruihua Shi Sarah Sims Susan R Singer Senjuti Sinharoy Lieven Sterck Agnès Viollet Bing-Bing Wang Keqin Wang Mingyi Wang Xiaohong Wang Jens Warfsmann Jean Weissenbach Doug D White Jim D White Graham B Wiley Patrick Wincker Yanbo Xing Limei Yang Ziyun Yao Fu Ying Jixian Zhai Liping Zhou Antoine Zuber Jean Dénarié Richard A Dixon Gregory D May David C Schwartz Jane Rogers Francis Quétier Christopher D Town Bruce A Roe

Nature 2011 Nov 16;480(7378):520-4. Epub 2011 Nov 16.

Department of Plant Pathology, University of Minnesota, St Paul, Minnesota 55108, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature10625DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3272368PMC
November 2011

Transcription reprogramming during root nodule development in Medicago truncatula.

PLoS One 2011 Jan 27;6(1):e16463. Epub 2011 Jan 27.

Laboratoire des Interactions Plantes Micro-organismes, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Castanet-Tolosan, France.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0016463PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3029352PMC
January 2011

FrameDP: sensitive peptide detection on noisy matured sequences.

Bioinformatics 2009 Mar 19;25(5):670-1. Epub 2009 Jan 19.

Laboratoire Interactions Plantes Micro-organismes (LIPM) UMR441/2594, INRA/CNRS, F-31320 Castanet Tolosan, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btp024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2647831PMC
March 2009

Symbiosis-related plant genes modulate molecular responses in an arbuscular mycorrhizal fungus during early root interactions.

Mol Plant Microbe Interact 2009 Mar;22(3):341-51

UMR 1088 INRA/5184 CNRS/Université de Bourgogne, Plante-Microbe-Environnement, INRA-CMSE, BP 86510, 21065 Dijon Cedex, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1094/MPMI-22-3-0341DOI Listing
March 2009

The abundant extrachromosomal DNA content of the Spiroplasma citri GII3-3X genome.

BMC Genomics 2008 Apr 28;9:195. Epub 2008 Apr 28.

Université Victor Ségalen Bordeaux 2, UMR 1090 Génomique Diversité Pouvoir Pathogène, BP 81, F-33883 Villenave d'Ornon, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-9-195DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2386487PMC
April 2008

Narcisse: a mirror view of conserved syntenies.

Nucleic Acids Res 2008 Jan 2;36(Database issue):D485-90. Epub 2007 Nov 2.

Laboratoire Interactions Plantes Micro-organismes UMR 441/2594, INRA/CNRS and Laboratoire de Génétique Cellulaire UMR 444 INRA/ENVT, INRA, Centre de Recherches de Toulouse, 31326 Castanet Tolosan, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkm805DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238891PMC
January 2008

LeARN: a platform for detecting, clustering and annotating non-coding RNAs.

BMC Bioinformatics 2008 Jan 14;9:21. Epub 2008 Jan 14.

Laboratoire Interactions Plantes Micro-organismes UMR441/2594, INRA/CNRS, F-31320 Castanet Tolosan, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-9-21DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2241582PMC
January 2008

Phylogenetic exploration of bacterial genomic rearrangements.

Bioinformatics 2007 May 1;23(9):1172-4. Epub 2007 Mar 1.

Université Paul Sabatier, CNRS-LMGM, UMR 5100, Toulouse Cedex, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btm070DOI Listing
May 2007

Identification of new potential regulators of the Medicago truncatula-Sinorhizobium meliloti symbiosis using a large-scale suppression subtractive hybridization approach.

Mol Plant Microbe Interact 2007 Mar;20(3):321-32

Laboratoire des Interactions Plantes Micro-organismes (LIPM), UMR CNRS-INRA 2594/441, BP 52627, F- 31 326 Castanet Tolosan, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1094/MPMI-20-3-0321DOI Listing
March 2007

REMORA: a pilot in the ocean of BioMoby web-services.

Bioinformatics 2006 Apr 19;22(7):900-1. Epub 2006 Jan 19.

INRA-CNRS Laboratoire des Interactions Plantes Micro-organismes (LIPM) BP 52627, 31326 Castanet Tolosan Cedex, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btl001DOI Listing
April 2006

Expression profiling in Medicago truncatula identifies more than 750 genes differentially expressed during nodulation, including many potential regulators of the symbiotic program.

Plant Physiol 2004 Oct 1;136(2):3159-76. Epub 2004 Oct 1.

Laboratoire des Interactions Plantes Micro-Organismes, Institut National de la Recherche Agronomique-Centre National de la Recherche Scientifique, 31326 Castanet Tolosan cedex, France.

View Article

Download full-text PDF

Source
http://www.plantphysiol.org/cgi/doi/10.1104/pp.104.043612
Publisher Site
http://dx.doi.org/10.1104/pp.104.043612DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC523376PMC
October 2004

FixJ-regulated genes evolved through promoter duplication in Sinorhizobium meliloti.

Microbiology 2004 Jul;150(Pt 7):2335-2345

Laboratoire des Interactions Plantes-Microorganismes, UMR 2594 INRA-CNRS, Chemin de Borde-Rouge, BP 27, 31326 Castanet-Tolosan Cedex, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1099/mic.0.27081-0DOI Listing
July 2004

FrameD: A flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences.

Nucleic Acids Res 2003 Jul;31(13):3738-41

Unité de Biométrie et Intelligence Artificielle, INRA, CNRS-INRA, 31326, Castanet Tolosan Cedex, France.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC169016PMC
http://dx.doi.org/10.1093/nar/gkg610DOI Listing
July 2003

Exploring root symbiotic programs in the model legume Medicago truncatula using EST analysis.

Nucleic Acids Res 2002 Dec;30(24):5579-92

Laboratoire de Biologie Moléculaire des Relations Plantes-Microorganismes, CNRS-INRA, Laboratoire de Biométrie et Intelligence Artificielle, INRA, 31326 Castanet-Tolosan Cedex, France.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC140066PMC
http://dx.doi.org/10.1093/nar/gkf685DOI Listing
December 2002