Jerilyn A Walker

Jerilyn A Walker

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Jerilyn A Walker

Jerilyn A Walker

Publications by authors named "Jerilyn A Walker"

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42Publications

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Analysis of lineage-specific subfamilies in the genome of the olive baboon, .

Mob DNA 2018 19;9:10. Epub 2018 Mar 19.

Department of Biological Sciences, Louisiana State University, 202 Life Sciences Bldg., Baton Rouge, LA 70803 USA.

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http://dx.doi.org/10.1186/s13100-018-0115-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5858127PMC
March 2018

Recently integrated insertions in the squirrel monkey () lineage and application for population analyses.

Mob DNA 2018 12;9. Epub 2018 Feb 12.

Department of Biological Sciences, Louisiana State University, 202 Life Sciences Bldg., Baton Rouge, LA 70803 USA.

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http://dx.doi.org/10.1186/s13100-018-0114-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5808450PMC
February 2018

An integrated map of structural variation in 2,504 human genomes.

Nature 2015 Oct;526(7571):75-81

European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Meyerhofstr. 1, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1038/nature15394DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617611PMC
October 2015

A comparison of 100 human genes using an alu element-based instability model.

PLoS One 2013 3;8(6):e65188. Epub 2013 Jun 3.

Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0065188PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3670932PMC
January 2015

Gibbon genome and the fast karyotype evolution of small apes.

Nature 2014 Sep;513(7517):195-201

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/nature13679DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4249732PMC
September 2014

Tangram: a comprehensive toolbox for mobile element insertion detection.

BMC Genomics 2014 Sep 16;15:795. Epub 2014 Sep 16.

Department of Human Genetics and USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, Utah, USA.

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http://dx.doi.org/10.1186/1471-2164-15-795DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4180832PMC
September 2014

Orangutan Alu quiescence reveals possible source element: support for ancient backseat drivers.

Mob DNA 2012 Apr 30;3. Epub 2012 Apr 30.

Department of Biological Sciences, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1186/1759-8753-3-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3357318PMC
April 2012

Alu pair exclusions in the human genome.

Mob DNA 2011 Sep 23;2:10. Epub 2011 Sep 23.

Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, 70803, USA.

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http://dx.doi.org/10.1186/1759-8753-2-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3215922PMC
September 2011

Comparative and demographic analysis of orang-utan genomes.

Authors:
Devin P Locke LaDeana W Hillier Wesley C Warren Kim C Worley Lynne V Nazareth Donna M Muzny Shiaw-Pyng Yang Zhengyuan Wang Asif T Chinwalla Pat Minx Makedonka Mitreva Lisa Cook Kim D Delehaunty Catrina Fronick Heather Schmidt Lucinda A Fulton Robert S Fulton Joanne O Nelson Vincent Magrini Craig Pohl Tina A Graves Chris Markovic Andy Cree Huyen H Dinh Jennifer Hume Christie L Kovar Gerald R Fowler Gerton Lunter Stephen Meader Andreas Heger Chris P Ponting Tomas Marques-Bonet Can Alkan Lin Chen Ze Cheng Jeffrey M Kidd Evan E Eichler Simon White Stephen Searle Albert J Vilella Yuan Chen Paul Flicek Jian Ma Brian Raney Bernard Suh Richard Burhans Javier Herrero David Haussler Rui Faria Olga Fernando Fleur Darré Domènec Farré Elodie Gazave Meritxell Oliva Arcadi Navarro Roberta Roberto Oronzo Capozzi Nicoletta Archidiacono Giuliano Della Valle Stefania Purgato Mariano Rocchi Miriam K Konkel Jerilyn A Walker Brygg Ullmer Mark A Batzer Arian F A Smit Robert Hubley Claudio Casola Daniel R Schrider Matthew W Hahn Victor Quesada Xose S Puente Gonzalo R Ordoñez Carlos López-Otín Tomas Vinar Brona Brejova Aakrosh Ratan Robert S Harris Webb Miller Carolin Kosiol Heather A Lawson Vikas Taliwal André L Martins Adam Siepel Arindam Roychoudhury Xin Ma Jeremiah Degenhardt Carlos D Bustamante Ryan N Gutenkunst Thomas Mailund Julien Y Dutheil Asger Hobolth Mikkel H Schierup Oliver A Ryder Yuko Yoshinaga Pieter J de Jong George M Weinstock Jeffrey Rogers Elaine R Mardis Richard A Gibbs Richard K Wilson

Nature 2011 Jan;469(7331):529-33

The Genome Center at Washington University, Washington University School of Medicine, 4444 Forest Park Avenue, Saint Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature09687DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3060778PMC
January 2011

LINEs and SINEs of primate evolution.

Evol Anthropol 2010 Nov;19(6):236-249

Department of Biological Sciences, Louisiana State University, 202 Life Sciences Bldg., Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1002/evan.20283DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4137791PMC
November 2010

Laboratory methods for the analysis of primate mobile elements.

Methods Mol Biol 2010 ;628:153-79

Department of Biology, West Virginia University, Morgantown, WV, USA.

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http://dx.doi.org/10.1007/978-1-60327-367-1_9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2880178PMC
May 2010

The genome of a songbird.

Nature 2010 Apr;464(7289):757-62

The Genome Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature08819DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187626PMC
April 2010

Genome analysis of the platypus reveals unique signatures of evolution.

Authors:
Wesley C Warren LaDeana W Hillier Jennifer A Marshall Graves Ewan Birney Chris P Ponting Frank Grützner Katherine Belov Webb Miller Laura Clarke Asif T Chinwalla Shiaw-Pyng Yang Andreas Heger Devin P Locke Pat Miethke Paul D Waters Frédéric Veyrunes Lucinda Fulton Bob Fulton Tina Graves John Wallis Xose S Puente Carlos López-Otín Gonzalo R Ordóñez Evan E Eichler Lin Chen Ze Cheng Janine E Deakin Amber Alsop Katherine Thompson Patrick Kirby Anthony T Papenfuss Matthew J Wakefield Tsviya Olender Doron Lancet Gavin A Huttley Arian F A Smit Andrew Pask Peter Temple-Smith Mark A Batzer Jerilyn A Walker Miriam K Konkel Robert S Harris Camilla M Whittington Emily S W Wong Neil J Gemmell Emmanuel Buschiazzo Iris M Vargas Jentzsch Angelika Merkel Juergen Schmitz Anja Zemann Gennady Churakov Jan Ole Kriegs Juergen Brosius Elizabeth P Murchison Ravi Sachidanandam Carly Smith Gregory J Hannon Enkhjargal Tsend-Ayush Daniel McMillan Rosalind Attenborough Willem Rens Malcolm Ferguson-Smith Christophe M Lefèvre Julie A Sharp Kevin R Nicholas David A Ray Michael Kube Richard Reinhardt Thomas H Pringle James Taylor Russell C Jones Brett Nixon Jean-Louis Dacheux Hitoshi Niwa Yoko Sekita Xiaoqiu Huang Alexander Stark Pouya Kheradpour Manolis Kellis Paul Flicek Yuan Chen Caleb Webber Ross Hardison Joanne Nelson Kym Hallsworth-Pepin Kim Delehaunty Chris Markovic Pat Minx Yucheng Feng Colin Kremitzki Makedonka Mitreva Jarret Glasscock Todd Wylie Patricia Wohldmann Prathapan Thiru Michael N Nhan Craig S Pohl Scott M Smith Shunfeng Hou Mikhail Nefedov Pieter J de Jong Marilyn B Renfree Elaine R Mardis Richard K Wilson

Nature 2008 May;453(7192):175-83

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature06936DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2803040PMC
May 2008

SINEs, evolution and genome structure in the opossum.

Gene 2007 Jul 19;396(1):46-58. Epub 2007 Mar 19.

Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO 80045, USA.

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http://dx.doi.org/10.1016/j.gene.2007.02.028DOI Listing
July 2007

Mobile element-based forensic genomics.

Mutat Res 2007 Mar 8;616(1-2):24-33. Epub 2006 Dec 8.

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.mrfmmm.2006.11.019DOI Listing
March 2007

Human genomic DNA quantitation system, H-Quant: development and validation for use in forensic casework.

J Forensic Sci 2007 Mar;52(2):364-70

ReliaGene Technologies, Inc., 5525 Mounes St. Suite 101, New Orleans, LA 70123, USA.

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http://dx.doi.org/10.1111/j.1556-4029.2006.00369.xDOI Listing
March 2007

SVA elements: a hominid-specific retroposon family.

J Mol Biol 2005 Dec 19;354(4):994-1007. Epub 2005 Oct 19.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for BioModular Multi-Scale Systems, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.jmb.2005.09.085DOI Listing
December 2005

Inference of human geographic origins using Alu insertion polymorphisms.

Forensic Sci Int 2005 Oct;153(2-3):117-24

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.forsciint.2004.10.017DOI Listing
October 2005

Multiplex polymerase chain reaction for simultaneous quantitation of human nuclear, mitochondrial, and male Y-chromosome DNA: application in human identification.

Anal Biochem 2005 Feb;337(1):89-97

Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Microsystems, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://ac.els-cdn.com/S0003269704007729/1-s2.0-S000326970400
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https://biosci-batzerlab.biology.lsu.edu/Publications/Walker
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http://dx.doi.org/10.1016/j.ab.2004.09.036DOI Listing
February 2005

Analysis of the human Alu Ya-lineage.

J Mol Biol 2004 Sep;342(1):109-18

Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Microsystems, Louisiana State University, 202 Life Sciences Building, Baton Rouge 70803, USA.

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http://dx.doi.org/10.1016/j.jmb.2004.07.016DOI Listing
September 2004

Quantitative PCR for DNA identification based on genome-specific interspersed repetitive elements.

Genomics 2004 Mar;83(3):518-27

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.ygeno.2003.09.003DOI Listing
March 2004

Genome-wide analysis of the human Alu Yb-lineage.

Hum Genomics 2004 Mar;1(3):167-78

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3525081PMC
March 2004

Resolution of mixed human DNA samples using mitochondrial DNA sequence variants.

Anal Biochem 2004 Feb;325(1):171-3

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.ab.2003.10.003DOI Listing
February 2004

Comprehensive analysis of Alu-associated diversity on the human sex chromosomes.

Gene 2003 Oct;317(1-2):103-10

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/s0378-1119(03)00662-0DOI Listing
October 2003

Following the LINEs: an analysis of primate genomic variation at human-specific LINE-1 insertion sites.

Mol Biol Evol 2003 Aug 30;20(8):1338-48. Epub 2003 May 30.

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, USA.

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http://dx.doi.org/10.1093/molbev/msg146DOI Listing
August 2003

Quantitative intra-short interspersed element PCR for species-specific DNA identification.

Anal Biochem 2003 May;316(2):259-69

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge 70803, USA.

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http://dx.doi.org/10.1016/s0003-2697(03)00095-2DOI Listing
May 2003

Human DNA quantitation using Alu element-based polymerase chain reaction.

Anal Biochem 2003 Apr;315(1):122-8

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, Baton Rouge, LA 70803, USA.

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https://biosci-batzerlab.biology.lsu.edu/Publications/Walker
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http://dx.doi.org/10.1016/s0003-2697(03)00081-2DOI Listing
April 2003

Mobile element-based assay for human gender determination.

Anal Biochem 2003 Jan;312(1):77-9

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/s0003-2697(02)00430-xDOI Listing
January 2003