Jeremy Mason

Jeremy Mason

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Jeremy Mason

Jeremy Mason

Publications by authors named "Jeremy Mason"

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Machine learning models for predicting post-cystectomy recurrence and survival in bladder cancer patients.

PLoS One 2019 20;14(2):e0210976. Epub 2019 Feb 20.

Department of Aerospace and Mechanical Engineering, Viterbi School of Engineering, University of Southern California, University Park Campus, Los Angeles, CA, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0210976PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6382101PMC
October 2019

Prediction of Bone Metastasis in Inflammatory Breast Cancer Using a Markov Chain Model.

Oncologist 2019 10 5;24(10):1322-1330. Epub 2019 Apr 5.

Department of Breast Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA

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http://theoncologist.alphamedpress.org/lookup/doi/10.1634/th
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http://dx.doi.org/10.1634/theoncologist.2018-0713DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6795167PMC
October 2019

The Alstoscholarisine Alkaloids: Isolation, Structure Determination, Biogenesis, Biological Evaluation, and Synthesis.

Alkaloids Chem Biol 2019;81:115-150. Epub 2018 Nov 15.

Department of Chemistry, The Pennsylvania State University, University Park, PA, United States. Electronic address:

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http://dx.doi.org/10.1016/bs.alkal.2018.09.001DOI Listing
April 2019

A novel approach to describe chemical environments in high-dimensional neural network potentials.

J Chem Phys 2019 Apr;150(15):154102

Department of Mechanical Engineering, Bogazici University, Istanbul, Turkey.

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http://dx.doi.org/10.1063/1.5086167DOI Listing
April 2019

Erratum: Author Correction: Identification of genes required for eye development by high-throughput screening of mouse knockouts.

Commun Biol 2019 7;2:97. Epub 2019 Mar 7.

Department of Ophthalmology & Vision Science, School of Medicine, U.C. Davis, Sacramento, CA, 95817, USA.

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http://dx.doi.org/10.1038/s42003-019-0349-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6405960PMC
March 2019

Synthesis of Alstoscholarisines A-E, Monoterpene Indole Alkaloids with Modulating Effects on Neural Stem Cells.

J Org Chem 2018 06 10;83(11):5877-5896. Epub 2018 May 10.

Department of Chemistry , The Pennsylvania State University University Park , Pennsylvania 16802 , United States.

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http://dx.doi.org/10.1021/acs.joc.8b00889DOI Listing
June 2018

Identification of genetic elements in metabolism by high-throughput mouse phenotyping.

Nat Commun 2018 01 18;9(1):288. Epub 2018 Jan 18.

German Mouse Clinic, Institute of Experimental Genetics, Helmholtz Zentrum München, German Research Center for Environmental Health, Ingolstädter Landstr. 1, 85764, Neuherberg, Germany.

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http://dx.doi.org/10.1038/s41467-017-01995-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5773596PMC
January 2018

Total Syntheses of the Monoterpenoid Indole Alkaloids (±)-Alstoscholarisine B and C.

Angew Chem Int Ed Engl 2017 12 1;56(52):16674-16676. Epub 2017 Dec 1.

Department of Chemistry, The Pennsylvania State University, University Park, PA, 16802, USA.

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http://dx.doi.org/10.1002/anie.201710943DOI Listing
December 2017

Corrigendum: High-throughput discovery of novel developmental phenotypes.

Nature 2017 11 8;551(7680):398. Epub 2017 Nov 8.

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http://dx.doi.org/10.1038/nature24643DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5849394PMC
November 2017

Development of metastatic brain disease involves progression through lung metastases in mutated non-small cell lung cancer.

Converg Sci Phys Oncol 2017 Sep 13;3(3). Epub 2017 Jul 13.

Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, 1441 Eastlake Ave, NOR 3444, Los Angeles, CA 90033.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6166474PMC
September 2017

Nanolayering around and thermal resistivity of the water-hexagonal boron nitride interface.

J Chem Phys 2017 Jul;147(4):044709

Department of Mechanical Engineering, Boğaziçi University, Istanbul, 43210 Turkey.

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http://dx.doi.org/10.1063/1.4985913DOI Listing
July 2017

Stolonidiol: Synthesis, Target Identification, and Mechanism for Choline Acetyltransferase Activation.

J Am Chem Soc 2017 04 17;139(16):5865-5869. Epub 2017 Apr 17.

Department of Chemistry and ‡Department of Molecular Therapeutics, The Scripps Research Institute , 130 Scripps Way, Jupiter, Florida 33458, United States.

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http://dx.doi.org/10.1021/jacs.7b01083DOI Listing
April 2017

A new interlayer potential for hexagonal boron nitride.

J Phys Condens Matter 2016 09 25;28(38):385401. Epub 2016 Jul 25.

Department of Mechanical Engineering, Boğaziçi University, Istanbul, Turkey.

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http://dx.doi.org/10.1088/0953-8984/28/38/385401DOI Listing
September 2016

The prisoner's dilemma as a cancer model.

Converg Sci Phys Oncol 2016 Sep 4;2(3). Epub 2016 Jul 4.

Dept. of Aerospace & Mechanical Engineering, Dept. of Mathematics, Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA.

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http://dx.doi.org/10.1088/2057-1739/2/3/035002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5701760PMC
September 2016

High-throughput discovery of novel developmental phenotypes.

Nature 2016 09 14;537(7621):508-514. Epub 2016 Sep 14.

The Jackson Laboratory, Bar Harbor, Maine 04609, USA.

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http://dx.doi.org/10.1038/nature19356DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5295821PMC
September 2016

PhenStat: A Tool Kit for Standardized Analysis of High Throughput Phenotypic Data.

PLoS One 2015 6;10(7):e0131274. Epub 2015 Jul 6.

Mouse Informatics Group, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0131274PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4493137PMC
April 2016

Geometric and topological properties of the canonical grain-growth microstructure.

Phys Rev E Stat Nonlin Soft Matter Phys 2015 Dec 22;92(6):063308. Epub 2015 Dec 22.

Materials Science and Engineering, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.

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http://dx.doi.org/10.1103/PhysRevE.92.063308DOI Listing
December 2015

Spatiotemporal progression of metastatic breast cancer: a Markov chain model highlighting the role of early metastatic sites.

NPJ Breast Cancer 2015 21;1:15018. Epub 2015 Oct 21.

Department of Biological Sciences, Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA, USA.

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http://dx.doi.org/10.1038/npjbcancer.2015.18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5515198PMC
October 2015

Entropy, complexity, and Markov diagrams for random walk cancer models.

Sci Rep 2014 Dec 19;4:7558. Epub 2014 Dec 19.

Department of Biological Sciences, University of Southern California, 3430 S. Vermont Ave, Suite 105, Los Angeles CA 90089-3301.

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http://dx.doi.org/10.1038/srep07558DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4894412PMC
December 2014

Adrenal metastases in lung cancer: clinical implications of a mathematical model.

J Thorac Oncol 2014 Apr;9(4):442-6

*Division of Hematology Oncology, Department of Medicine, Moore's Cancer Center, University of California San Diego, San Diego, California; †Department of Aerospace and Mechanical Engineering, University of Southern California, Los Angeles, California; ‡Department of Mathematics, University of Southern California, Los Angeles, California; §Department of Pathology, Scripps Clinic, La Jolla, California; ‖Division of Oncology and Hematology, Billings Clinic, Billings, Montana; and ¶Department of Cell Biology, The Scripps Research Institute, La Jolla, California.

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http://dx.doi.org/10.1097/JTO.0000000000000133DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3989547PMC
April 2014

The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data.

Nucleic Acids Res 2014 Jan 4;42(Database issue):D802-9. Epub 2013 Nov 4.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, Medical Research Council Harwell (Mammalian Genetics Unit and Mary Lyon Centre), Harwell, Oxfordshire OX11 0RD, UK and Mouse Informatics Group, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1093/nar/gkt977DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964955PMC
January 2014

Statistical topology of three-dimensional Poisson-Voronoi cells and cell boundary networks.

Phys Rev E Stat Nonlin Soft Matter Phys 2013 Dec 20;88(6):063309. Epub 2013 Dec 20.

Materials Science and Engineering, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.

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http://dx.doi.org/10.1103/PhysRevE.88.063309DOI Listing
December 2013

Spreaders and sponges define metastasis in lung cancer: a Markov chain Monte Carlo mathematical model.

Cancer Res 2013 May 27;73(9):2760-9. Epub 2013 Feb 27.

Department of Aerospace & Mechanical Engineering, Viterbi School of Engineering, University of Southern California, Los Angles 90089, USA.

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http://cancerres.aacrjournals.org/cgi/doi/10.1158/0008-5472.
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http://dx.doi.org/10.1158/0008-5472.CAN-12-4488DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3644026PMC
May 2013

The mammalian gene function resource: the International Knockout Mouse Consortium.

Mamm Genome 2012 Oct 12;23(9-10):580-6. Epub 2012 Sep 12.

The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1HH, UK.

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http://dx.doi.org/10.1007/s00335-012-9422-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3463800PMC
October 2012

A stochastic Markov chain model to describe lung cancer growth and metastasis.

PLoS One 2012 27;7(4):e34637. Epub 2012 Apr 27.

Department of Aerospace & Mechanical Engineering and Department of Mathematics, University of Southern California, Los Angeles, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0034637PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338733PMC
September 2012

Complete topology of cells, grains, and bubbles in three-dimensional microstructures.

Phys Rev Lett 2012 Aug 30;109(9):095505. Epub 2012 Aug 30.

School of Mathematics, Institute for Advanced Study, Princeton, New Jersey 08540, USA.

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http://dx.doi.org/10.1103/PhysRevLett.109.095505DOI Listing
August 2012

Xanthates as synthetic equivalents of oxyacyl radicals: access to lactones under tin-free conditions.

J Org Chem 2012 Jul 5;77(14):6332-9. Epub 2012 Jul 5.

Department of Chemistry, University of Victoria, Victoria, BC, Canada V8W 3V6.

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http://dx.doi.org/10.1021/jo300939fDOI Listing
July 2012

Computational topology for configuration spaces of hard disks.

Phys Rev E Stat Nonlin Soft Matter Phys 2012 Jan 9;85(1 Pt 1):011303. Epub 2012 Jan 9.

Department of Mathematics, Stanford University, Stanford, California 94305, USA.

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http://dx.doi.org/10.1103/PhysRevE.85.011303DOI Listing
January 2012

The de-guanidinylated derivative of peramivir remains a potent inhibitor of influenza neuraminidase.

Bioorg Med Chem Lett 2011 Dec 24;21(23):7137-41. Epub 2011 Sep 24.

Department of Chemistry, University of Victoria, Victoria, BC, Canada.

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http://dx.doi.org/10.1016/j.bmcl.2011.09.076DOI Listing
December 2011

A sulfone-based strategy for the preparation of 2,4-disubstituted furan derivatives.

J Org Chem 2011 Oct 1;76(19):8131-7. Epub 2011 Sep 1.

Department of Chemistry, Allegheny College, Meadville, Pennsylvania 16335, United States.

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http://dx.doi.org/10.1021/jo201529sDOI Listing
October 2011

Correlated grain-boundary distributions in two-dimensional networks.

Acta Crystallogr A 2007 Jul 1;63(Pt 4):315-28. Epub 2007 Jul 1.

Department of Materials Science and Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA.

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http://dx.doi.org/10.1107/S0108767307021782DOI Listing
July 2007

Thermodynamic basis for redox regulation of the Yap1 signal transduction pathway.

Biochemistry 2006 Nov;45(45):13409-17

Department of Chemistry and Biochemistry, Center for Biotechnology and Genomics, Texas Tech University, Lubbock, Texas 79409-1061, USA.

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http://dx.doi.org/10.1021/bi061136yDOI Listing
November 2006

The interaction of 5'-adenylylsulfate reductase from Pseudomonas aeruginosa with its substrates.

Biochim Biophys Acta 2005 Dec 7;1710(2-3):103-12. Epub 2005 Oct 7.

Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409-1061, USA.

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http://dx.doi.org/10.1016/j.bbabio.2005.09.004DOI Listing
December 2005

Subtle difference between benzene and toluene dioxygenases of Pseudomonas putida.

Appl Environ Microbiol 2005 Mar;71(3):1570-80

Molecular Genetics and Microbiology Group, Division of Life Sciences, King's College London, London, United Kingdom.

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http://dx.doi.org/10.1128/AEM.71.3.1570-1580.2005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1065172PMC
March 2005