Jeremy F Ullmann

Jeremy F P Ullmann

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Jeremy F Ullmann

Jeremy F P Ullmann

Publications by authors named "Jeremy F P Ullmann"

30Publications

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1PubMed Central Citations

An Open-Source Husbandry Repository.

Authors:
Christopher Mark LaCoursiere Jeremy F P Ullmann Annapurna Poduri

Zebrafish 2018 12 5;15(6):656-658. Epub 2018 Sep 5.

1 Epilepsy Genetics Program, Division of Epilepsy and Clinical Neurophysiology, Department of Neurology, Boston Children's Hospital , Boston, Massachusetts.

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https://www.liebertpub.com/doi/10.1089/zeb.2018.1583
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http://dx.doi.org/10.1089/zeb.2018.1583DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6426270PMC
December 2018

A 3D MRI-based atlas of a lizard brain.

Authors:
Daniel Hoops Ester Desfilis Jeremy F P Ullmann Andrew L Janke Timothy Stait-Gardner Gabriel A Devenyi William S Price Loreta Medina Martin J Whiting J Scott Keogh

J Comp Neurol 2018 11 2;526(16):2511-2547. Epub 2018 Nov 2.

Division of Ecology & Evolution, Research School of Biology, The Australian National University, Canberra, ACT, Australia.

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http://dx.doi.org/10.1002/cne.24480DOI Listing
November 2018

Evidence for Concerted and Mosaic Brain Evolution in Dragon Lizards.

Authors:
Daniel Hoops Marta Vidal-García Jeremy F P Ullmann Andrew L Janke Timothy Stait-Gardner David A Duchêne William S Price Martin J Whiting J Scott Keogh

Brain Behav Evol 2017 5;90(3):211-223. Epub 2017 Sep 5.

Division of Ecology and Evolution, Research School of Biology, The Australian National University, Acton, ACT, Australia.

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http://dx.doi.org/10.1159/000478738DOI Listing
June 2018

Acute multi-sgRNA knockdown of KEOPS complex genes reproduces the microcephaly phenotype of the stable knockout zebrafish model.

Authors:
Tilman Jobst-Schwan Johanna Magdalena Schmidt Ronen Schneider Charlotte A Hoogstraten Jeremy F P Ullmann David Schapiro Amar J Majmundar Amy Kolb Kaitlyn Eddy Shirlee Shril Daniela A Braun Annapurna Poduri Friedhelm Hildebrandt

PLoS One 2018 18;13(1):e0191503. Epub 2018 Jan 18.

Department of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0191503PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5773193PMC
February 2018

Whole-Volume Clustering of Time Series Data from Zebrafish Brain Calcium Images via Mixture Modeling.

Authors:
Hien D Nguyen Jeremy F P Ullmann Geoffrey J McLachlan Venkatakaushik Voleti Wenze Li Elizabeth M C Hillman David C Reutens Andrew L Janke

Stat Anal Data Min 2018 Feb 6;11(1):5-16. Epub 2017 Dec 6.

Centre for Advanced Imaging, The University of Queensland, St. Lucia, Brisbane, Australia 4075.

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http://dx.doi.org/10.1002/sam.11366DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5927610PMC
February 2018

Mutations in KEOPS-complex genes cause nephrotic syndrome with primary microcephaly.

Authors:
Daniela A Braun Jia Rao Geraldine Mollet David Schapiro Marie-Claire Daugeron Weizhen Tan Olivier Gribouval Olivia Boyer Patrick Revy Tilman Jobst-Schwan Johanna Magdalena Schmidt Jennifer A Lawson Denny Schanze Shazia Ashraf Jeremy F P Ullmann Charlotte A Hoogstraten Nathalie Boddaert Bruno Collinet Gaëlle Martin Dominique Liger Svjetlana Lovric Monica Furlano I Chiara Guerrera Oraly Sanchez-Ferras Jennifer F Hu Anne-Claire Boschat Sylvia Sanquer Björn Menten Sarah Vergult Nina De Rocker Merlin Airik Tobias Hermle Shirlee Shril Eugen Widmeier Heon Yung Gee Won-Il Choi Carolin E Sadowski Werner L Pabst Jillian K Warejko Ankana Daga Tamara Basta Verena Matejas Karin Scharmann Sandra D Kienast Babak Behnam Brendan Beeson Amber Begtrup Malcolm Bruce Gaik-Siew Ch'ng Shuan-Pei Lin Jui-Hsing Chang Chao-Huei Chen Megan T Cho Patrick M Gaffney Patrick E Gipson Chyong-Hsin Hsu Jameela A Kari Yu-Yuan Ke Cathy Kiraly-Borri Wai-Ming Lai Emmanuelle Lemyre Rebecca Okashah Littlejohn Amira Masri Mastaneh Moghtaderi Kazuyuki Nakamura Fatih Ozaltin Marleen Praet Chitra Prasad Agnieszka Prytula Elizabeth R Roeder Patrick Rump Rhonda E Schnur Takashi Shiihara Manish D Sinha Neveen A Soliman Kenza Soulami David A Sweetser Wen-Hui Tsai Jeng-Daw Tsai Rezan Topaloglu Udo Vester David H Viskochil Nithiwat Vatanavicharn Jessica L Waxler Klaas J Wierenga Matthias T F Wolf Sik-Nin Wong Sebastian A Leidel Gessica Truglio Peter C Dedon Annapurna Poduri Shrikant Mane Richard P Lifton Maxime Bouchard Peter Kannu David Chitayat Daniella Magen Bert Callewaert Herman van Tilbeurgh Martin Zenker Corinne Antignac Friedhelm Hildebrandt

Nat Genet 2017 Oct 14;49(10):1529-1538. Epub 2017 Aug 14.

Department of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.

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http://www.nature.com/doifinder/10.1038/ng.3933
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http://dx.doi.org/10.1038/ng.3933DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5819591PMC
October 2017

An ontologically consistent MRI-based atlas of the mouse diencephalon.

Authors:
Charles Watson Andrew L Janke Carlo Hamalainen Shahrzad M Bagheri George Paxinos David C Reutens Jeremy F P Ullmann

Neuroimage 2017 08 31;157:275-287. Epub 2017 May 31.

The Australian Mouse Brain Mapping Consortium, The University of Queensland, Brisbane, Australia; Centre for Advanced Imaging, The University of Queensland, Brisbane, Australia; Department of Neurology, Boston Children's Hospital, Boston, MA, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2017.05.057DOI Listing
August 2017

A Model Program for Translational Medicine in Epilepsy Genetics.

Authors:
Lacey A Smith Jeremy F P Ullmann Heather E Olson Christelle M El Achkar Gessica Truglio McKenna Kelly Beth Rosen-Sheidley Annapurna Poduri

J Child Neurol 2017 03 6;32(4):429-436. Epub 2017 Jan 6.

1 Epilepsy Genetics Program, Division of Epilepsy and Clinical Neurophysiology, Department of Neurology, Boston Children's Hospital, Boston, MA, USA.

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http://dx.doi.org/10.1177/0883073816685654DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5625332PMC
March 2017

Optic-nerve-transmitted eyeshine, a new type of light emission from fish eyes.

Authors:
Roland Fritsch Jeremy F P Ullmann Pierre-Paul Bitton Shaun P Collin Nico K Michiels

Front Zool 2017 27;14:14. Epub 2017 Feb 27.

Institute of Evolution and Ecology, University of Tübingen, 72076 Tübingen, Baden-Württemberg Germany.

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http://dx.doi.org/10.1186/s12983-017-0198-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5327540PMC
February 2017

Disease-modifying effect of intravenous immunoglobulin in an experimental model of epilepsy.

Authors:
Min Chen Thiruma V Arumugam Gayeshika Leanage Quang M Tieng Ashwin Yadav Jeremy F P Ullmann David T She Vy Truong Marc J Ruitenberg David C Reutens

Sci Rep 2017 01 11;7:40528. Epub 2017 Jan 11.

Centre for Advanced Imaging, The University of Queensland, Brisbane, 4072, Australia.

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http://dx.doi.org/10.1038/srep40528DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5225452PMC
January 2017

Improving treatment of neurodevelopmental disorders: recommendations based on preclinical studies.

Authors:
Judith R Homberg Evan J Kyzar Adam Michael Stewart Michael Nguyen Manoj K Poudel David J Echevarria Adam D Collier Siddharth Gaikwad Viktor M Klimenko William Norton Julian Pittman Shun Nakamura Mamiko Koshiba Hideo Yamanouchi Sergey A Apryatin Maria Luisa Scattoni David M Diamond Jeremy F P Ullmann Matthew O Parker Richard E Brown Cai Song Allan V Kalueff

Expert Opin Drug Discov 2016 2;11(1):11-25. Epub 2015 Dec 2.

f Research Institute of Marine Drugs and Nutrition , College of Food Science and Technology, Guangdong Ocean University , Zhanjiang , Guangdong , China.

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http://dx.doi.org/10.1517/17460441.2016.1115834DOI Listing
September 2016

Genetic and environmental modulation of neurodevelopmental disorders: Translational insights from labs to beds.

Authors:
Judith R Homberg Evan J Kyzar Maria Luisa Scattoni William H Norton Julian Pittman Siddharth Gaikwad Michael Nguyen Manoj K Poudel Jeremy F P Ullmann David M Diamond Aleksandra A Kaluyeva Matthew O Parker Richard E Brown Cai Song Raul R Gainetdinov Irving I Gottesman Allan V Kalueff

Brain Res Bull 2016 07 23;125:79-91. Epub 2016 Apr 23.

Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia. Electronic address:

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http://dx.doi.org/10.1016/j.brainresbull.2016.04.015DOI Listing
July 2016

Brain tissue compartment density estimated using diffusion-weighted MRI yields tissue parameters consistent with histology.

Authors:
Farshid Sepehrband Kristi A Clark Jeremy F P Ullmann Nyoman D Kurniawan Gayeshika Leanage David C Reutens Zhengyi Yang

Hum Brain Mapp 2015 Sep 11;36(9):3687-702. Epub 2015 Jun 11.

Centre for Advanced Imaging, The University of Queensland, Brisbane, Australia.

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http://dx.doi.org/10.1002/hbm.22872DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4545675PMC
September 2015

Development of MRI-based atlases of non-human brains.

Authors:
Jeremy F P Ullmann Andrew L Janke David Reutens Charles Watson

J Comp Neurol 2015 Feb 8;523(3):391-405. Epub 2014 Oct 8.

Centre for Advanced Imaging, The University of Queensland, Brisbane, Queensland, 4072, Australia.

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http://dx.doi.org/10.1002/cne.23678DOI Listing
February 2015

Robust methods to create ex vivo minimum deformation atlases for brain mapping.

Authors:
Andrew L Janke Jeremy F P Ullmann

Methods 2015 Feb 22;73:18-26. Epub 2015 Jan 22.

Centre for Advanced Imaging, The University of Queensland, Brisbane, Australia.

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http://dx.doi.org/10.1016/j.ymeth.2015.01.005DOI Listing
February 2015

Enhanced characterization of the zebrafish brain as revealed by super-resolution track-density imaging.

Authors:
Jeremy F P Ullmann Fernando Calamante Shaun P Collin David C Reutens Nyoman D Kurniawan

Brain Struct Funct 2015 Jan 7;220(1):457-68. Epub 2013 Nov 7.

Centre for Advanced Imaging, The University of Queensland, Brisbane, QLD, 4072, Australia,

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http://dx.doi.org/10.1007/s00429-013-0667-7DOI Listing
January 2015

An MRI atlas of the mouse basal ganglia.

Authors:
Jeremy F P Ullmann Charles Watson Andrew L Janke Nyoman D Kurniawan George Paxinos David C Reutens

Brain Struct Funct 2014 Jul 21;219(4):1343-53. Epub 2013 May 21.

Center for Advanced Imaging, The University of Queensland, Brisbane, QLD, 4072, Australia,

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http://link.springer.com/10.1007/s00429-013-0572-0
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http://dx.doi.org/10.1007/s00429-013-0572-0DOI Listing
July 2014

Visualization of mouse barrel cortex using ex-vivo track density imaging.

Authors:
Nyoman D Kurniawan Kay L Richards Zhengyi Yang David She Jeremy F P Ullmann Randal X Moldrich Sha Liu Javier Urriola Yaksic Gayeshika Leanage Irina Kharatishvili Verena Wimmer Fernando Calamante Graham J Galloway Steven Petrou David C Reutens

Neuroimage 2014 Feb 21;87:465-75. Epub 2013 Sep 21.

Centre for Advanced Imaging, University of Queensland, Brisbane, Queensland, Australia.

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http://dx.doi.org/10.1016/j.neuroimage.2013.09.030DOI Listing
February 2014

Heterozygosity for nuclear factor one x affects hippocampal-dependent behaviour in mice.

Authors:
Lachlan Harris Chantelle Dixon Kathleen Cato Yee Hsieh Evelyn Heng Nyoman D Kurniawan Jeremy F P Ullmann Andrew L Janke Richard M Gronostajski Linda J Richards Thomas H J Burne Michael Piper

PLoS One 2013 11;8(6):e65478. Epub 2013 Jun 11.

The School of Biomedical Sciences, The University of Queensland, Brisbane, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0065478PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3679126PMC
January 2014

A segmentation protocol and MRI atlas of the C57BL/6J mouse neocortex.

Authors:
Jeremy F P Ullmann Charles Watson Andrew L Janke Nyoman D Kurniawan David C Reutens

Neuroimage 2013 Sep 12;78:196-203. Epub 2013 Apr 12.

Centre for Advanced Imaging, The University of Queensland, Brisbane, Australia.

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http://dx.doi.org/10.1016/j.neuroimage.2013.04.008DOI Listing
September 2013

Interpretation of medical imaging data with a mobile application: a mobile digital imaging processing environment.

Authors:
Meng Kuan Lin Oliver Nicolini Harald Waxenegger Graham J Galloway Jeremy F P Ullmann Andrew L Janke

Front Neurol 2013 4;4:85. Epub 2013 Jul 4.

Centre for Advanced Imaging, The University of Queensland , Brisbane, QLD , Australia.

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http://dx.doi.org/10.3389/fneur.2013.00085DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3701154PMC
July 2013

Hippocampal volume and cell density changes in a mouse model of human genetic epilepsy.

Authors:
Kay L Richards Nyoman D Kurniawan Zhengyi Yang Tae Hwan Kim Marianne D Keller Jun Low Jeremy F P Ullmann Stacey Cole Samuel Foong Graham J Galloway Christopher A Reid George Paxinos David C Reutens Steven Petrou

Neurology 2013 Mar 6;80(13):1240-6. Epub 2013 Mar 6.

Australian Mouse Brain Mapping Consortium, The University of Queensland, Brisbane, Queensland.

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http://dx.doi.org/10.1212/WNL.0b013e31828970ecDOI Listing
March 2013

The retinal wholemount technique: a window to understanding the brain and behaviour.

Authors:
Jeremy F P Ullmann Bret A Moore Shelby E Temple Esteban Fernández-Juricic Shaun P Collin

Brain Behav Evol 2012 6;79(1):26-44. Epub 2011 Dec 6.

School of Biomedical Sciences, The University of Queensland, Brisbane, Qld, Australia.

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http://dx.doi.org/10.1159/000332802DOI Listing
September 2012

Segmentation of the C57BL/6J mouse cerebellum in magnetic resonance images.

Authors:
Jeremy F P Ullmann Marianne D Keller Charles Watson Andrew L Janke Nyoman D Kurniawan Zhengyi Yang Kay Richards George Paxinos Gary F Egan Steven Petrou Perry Bartlett Graham J Galloway David C Reutens

Neuroimage 2012 Sep 30;62(3):1408-14. Epub 2012 May 30.

Centre for Advanced Imaging, The University of Queensland, Brisbane, QLD, Australia.

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http://dx.doi.org/10.1016/j.neuroimage.2012.05.061DOI Listing
September 2012

A method for detecting molecular transport within the cerebral ventricles of live zebrafish (Danio rerio) larvae.

Authors:
Maxwell H Turner Jeremy F P Ullmann Alan R Kay

J Physiol 2012 May 27;590(10):2233-40. Epub 2012 Feb 27.

Department of Biology, 336 BB, University of Iowa, Iowa City, IA 52242, USA.

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http://dx.doi.org/10.1113/jphysiol.2011.225896DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3424749PMC
May 2012

Quantitative assessment of brain volumes in fish: comparison of methodologies.

Authors:
Jeremy F P Ullmann Gary Cowin Shaun P Collin

Brain Behav Evol 2010 16;76(3-4):261-70. Epub 2010 Nov 16.

University of Queensland, Brisbane, Australia.

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http://dx.doi.org/10.1159/000321467DOI Listing
May 2011

Magnetic resonance microscopy of the barramundi (Lates calcarifer) brain.

Authors:
Jeremy F P Ullmann Gary Cowin Shaun P Collin

J Morphol 2010 Dec;271(12):1446-56

Sensory Neurobiology Group, School of Biomedical Sciences, The University of Queensland, Brisbane 4072, Queensland, Australia.

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http://dx.doi.org/10.1002/jmor.10887DOI Listing
December 2010

Magnetic resonance histology of the adult zebrafish brain: optimization of fixation and gadolinium contrast enhancement.

Authors:
Jeremy F P Ullmann Gary Cowin Nyoman D Kurniawan Shaun P Collin

NMR Biomed 2010 May 30;23(4):341-6. Epub 2009 Nov 30.

School of Biomedical Sciences, University of Queensland, Brisbane Qld, Australia.

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http://dx.doi.org/10.1002/nbm.1465DOI Listing
May 2010

A three-dimensional digital atlas of the zebrafish brain.

Authors:
Jeremy F P Ullmann Gary Cowin Nyoman D Kurniawan Shaun P Collin

Neuroimage 2010 May 6;51(1):76-82. Epub 2010 Feb 6.

Sensory Neurobiology Group, School of Biomedical Sciences, University of Queensland, St Lucia Qld 4072, Australia.

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http://dx.doi.org/10.1016/j.neuroimage.2010.01.086DOI Listing
May 2010

Visual acuity, environmental complexity, and social organization in African cichlid fishes.

Authors:
Adam P Dobberfuhl Jeremy F P Ullmann Caroly A Shumway

Behav Neurosci 2005 Dec;119(6):1648-55

Department of Research, New England Aquarium, Boston, MA 02110, USA.

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http://dx.doi.org/10.1037/0735-7044.119.6.1648DOI Listing
December 2005