Publications by authors named "Jeremy F P Ullmann"

31Publications

Precision Calcium Imaging of Dense Neural Populations via a Cell-Body-Targeted Calcium Indicator.

Neuron 2020 08 26;107(3):470-486.e11. Epub 2020 Jun 26.

The MIT Media Laboratory, Massachusetts Institute of Technology (MIT), Cambridge, MA, USA; Department of Biological Engineering, MIT, Cambridge, MA, USA; MIT Center for Neurobiological Engineering, MIT, Cambridge, MA, USA; Department of Brain and Cognitive Sciences, MIT, Cambridge, MA, USA; MIT McGovern Institute for Brain Research, MIT, Cambridge, MA, USA; Koch Institute, MIT, Cambridge, MA 02139, USA. Electronic address:

View Article and Find Full Text PDF
August 2020

An Open-Source Husbandry Repository.

Zebrafish 2018 12 5;15(6):656-658. Epub 2018 Sep 5.

1 Epilepsy Genetics Program, Division of Epilepsy and Clinical Neurophysiology, Department of Neurology, Boston Children's Hospital , Boston, Massachusetts.

View Article and Find Full Text PDF
December 2018

A 3D MRI-based atlas of a lizard brain.

J Comp Neurol 2018 11 2;526(16):2511-2547. Epub 2018 Nov 2.

Division of Ecology & Evolution, Research School of Biology, The Australian National University, Canberra, ACT, Australia.

View Article and Find Full Text PDF
November 2018

Whole-Volume Clustering of Time Series Data from Zebrafish Brain Calcium Images via Mixture Modeling.

Stat Anal Data Min 2018 Feb 6;11(1):5-16. Epub 2017 Dec 6.

Centre for Advanced Imaging, The University of Queensland, St. Lucia, Brisbane, Australia 4075.

View Article and Find Full Text PDF
February 2018

Evidence for Concerted and Mosaic Brain Evolution in Dragon Lizards.

Brain Behav Evol 2017 5;90(3):211-223. Epub 2017 Sep 5.

Division of Ecology and Evolution, Research School of Biology, The Australian National University, Acton, ACT, Australia.

View Article and Find Full Text PDF
June 2018

Mutations in KEOPS-complex genes cause nephrotic syndrome with primary microcephaly.

Authors:
Daniela A Braun Jia Rao Geraldine Mollet David Schapiro Marie-Claire Daugeron Weizhen Tan Olivier Gribouval Olivia Boyer Patrick Revy Tilman Jobst-Schwan Johanna Magdalena Schmidt Jennifer A Lawson Denny Schanze Shazia Ashraf Jeremy F P Ullmann Charlotte A Hoogstraten Nathalie Boddaert Bruno Collinet Gaëlle Martin Dominique Liger Svjetlana Lovric Monica Furlano I Chiara Guerrera Oraly Sanchez-Ferras Jennifer F Hu Anne-Claire Boschat Sylvia Sanquer Björn Menten Sarah Vergult Nina De Rocker Merlin Airik Tobias Hermle Shirlee Shril Eugen Widmeier Heon Yung Gee Won-Il Choi Carolin E Sadowski Werner L Pabst Jillian K Warejko Ankana Daga Tamara Basta Verena Matejas Karin Scharmann Sandra D Kienast Babak Behnam Brendan Beeson Amber Begtrup Malcolm Bruce Gaik-Siew Ch'ng Shuan-Pei Lin Jui-Hsing Chang Chao-Huei Chen Megan T Cho Patrick M Gaffney Patrick E Gipson Chyong-Hsin Hsu Jameela A Kari Yu-Yuan Ke Cathy Kiraly-Borri Wai-Ming Lai Emmanuelle Lemyre Rebecca Okashah Littlejohn Amira Masri Mastaneh Moghtaderi Kazuyuki Nakamura Fatih Ozaltin Marleen Praet Chitra Prasad Agnieszka Prytula Elizabeth R Roeder Patrick Rump Rhonda E Schnur Takashi Shiihara Manish D Sinha Neveen A Soliman Kenza Soulami David A Sweetser Wen-Hui Tsai Jeng-Daw Tsai Rezan Topaloglu Udo Vester David H Viskochil Nithiwat Vatanavicharn Jessica L Waxler Klaas J Wierenga Matthias T F Wolf Sik-Nin Wong Sebastian A Leidel Gessica Truglio Peter C Dedon Annapurna Poduri Shrikant Mane Richard P Lifton Maxime Bouchard Peter Kannu David Chitayat Daniella Magen Bert Callewaert Herman van Tilbeurgh Martin Zenker Corinne Antignac Friedhelm Hildebrandt

Nat Genet 2017 Oct 14;49(10):1529-1538. Epub 2017 Aug 14.

Department of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.

View Article and Find Full Text PDF
October 2017

An ontologically consistent MRI-based atlas of the mouse diencephalon.

Neuroimage 2017 08 31;157:275-287. Epub 2017 May 31.

The Australian Mouse Brain Mapping Consortium, The University of Queensland, Brisbane, Australia; Centre for Advanced Imaging, The University of Queensland, Brisbane, Australia; Department of Neurology, Boston Children's Hospital, Boston, MA, USA.

View Article and Find Full Text PDF
August 2017

Optic-nerve-transmitted eyeshine, a new type of light emission from fish eyes.

Front Zool 2017 27;14:14. Epub 2017 Feb 27.

Institute of Evolution and Ecology, University of Tübingen, 72076 Tübingen, Baden-Württemberg Germany.

View Article and Find Full Text PDF
February 2017

A Model Program for Translational Medicine in Epilepsy Genetics.

J Child Neurol 2017 03 6;32(4):429-436. Epub 2017 Jan 6.

1 Epilepsy Genetics Program, Division of Epilepsy and Clinical Neurophysiology, Department of Neurology, Boston Children's Hospital, Boston, MA, USA.

View Article and Find Full Text PDF
March 2017

Robust methods to create ex vivo minimum deformation atlases for brain mapping.

Methods 2015 Feb 22;73:18-26. Epub 2015 Jan 22.

Centre for Advanced Imaging, The University of Queensland, Brisbane, Australia.

View Article and Find Full Text PDF
February 2015

Development of MRI-based atlases of non-human brains.

J Comp Neurol 2015 Feb 8;523(3):391-405. Epub 2014 Oct 8.

Centre for Advanced Imaging, The University of Queensland, Brisbane, Queensland, 4072, Australia.

View Article and Find Full Text PDF
February 2015

Enhanced characterization of the zebrafish brain as revealed by super-resolution track-density imaging.

Brain Struct Funct 2015 Jan 7;220(1):457-68. Epub 2013 Nov 7.

Centre for Advanced Imaging, The University of Queensland, Brisbane, QLD, 4072, Australia,

View Article and Find Full Text PDF
January 2015

An MRI atlas of the mouse basal ganglia.

Brain Struct Funct 2014 Jul 21;219(4):1343-53. Epub 2013 May 21.

Center for Advanced Imaging, The University of Queensland, Brisbane, QLD, 4072, Australia,

View Article and Find Full Text PDF
July 2014

A segmentation protocol and MRI atlas of the C57BL/6J mouse neocortex.

Neuroimage 2013 Sep 12;78:196-203. Epub 2013 Apr 12.

Centre for Advanced Imaging, The University of Queensland, Brisbane, Australia.

View Article and Find Full Text PDF
September 2013

A method for detecting molecular transport within the cerebral ventricles of live zebrafish (Danio rerio) larvae.

J Physiol 2012 May 27;590(10):2233-40. Epub 2012 Feb 27.

Department of Biology, 336 BB, University of Iowa, Iowa City, IA 52242, USA.

View Article and Find Full Text PDF
May 2012

The retinal wholemount technique: a window to understanding the brain and behaviour.

Brain Behav Evol 2012 6;79(1):26-44. Epub 2011 Dec 6.

School of Biomedical Sciences, The University of Queensland, Brisbane, Qld, Australia.

View Article and Find Full Text PDF
September 2012

Quantitative assessment of brain volumes in fish: comparison of methodologies.

Brain Behav Evol 2010 16;76(3-4):261-70. Epub 2010 Nov 16.

University of Queensland, Brisbane, Australia.

View Article and Find Full Text PDF
May 2011

Magnetic resonance microscopy of the barramundi (Lates calcarifer) brain.

J Morphol 2010 Dec;271(12):1446-56

Sensory Neurobiology Group, School of Biomedical Sciences, The University of Queensland, Brisbane 4072, Queensland, Australia.

View Article and Find Full Text PDF
December 2010

A three-dimensional digital atlas of the zebrafish brain.

Neuroimage 2010 May 6;51(1):76-82. Epub 2010 Feb 6.

Sensory Neurobiology Group, School of Biomedical Sciences, University of Queensland, St Lucia Qld 4072, Australia.

View Article and Find Full Text PDF
May 2010

Magnetic resonance histology of the adult zebrafish brain: optimization of fixation and gadolinium contrast enhancement.

NMR Biomed 2010 May 30;23(4):341-6. Epub 2009 Nov 30.

School of Biomedical Sciences, University of Queensland, Brisbane Qld, Australia.

View Article and Find Full Text PDF
May 2010

Visual acuity, environmental complexity, and social organization in African cichlid fishes.

Behav Neurosci 2005 Dec;119(6):1648-55

Department of Research, New England Aquarium, Boston, MA 02110, USA.

View Article and Find Full Text PDF
December 2005