Publications by authors named "Jeremy A Lynch"

34Publications

Transcriptomic and functional analysis of the oosome, a unique form of germ plasm in the wasp Nasonia vitripennis.

BMC Biol 2019 10 10;17(1):78. Epub 2019 Oct 10.

Department of Biological Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.

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http://dx.doi.org/10.1186/s12915-019-0696-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6785909PMC
October 2019

Evolution of maternal control of axial patterning in insects.

Authors:
Jeremy A Lynch

Curr Opin Insect Sci 2019 02 24;31:37-42. Epub 2018 Jul 24.

University of Illinois at Chicago, Chicago, IL, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cois.2018.07.011DOI Listing
February 2019

Ankyrin domain encoding genes from an ancient horizontal transfer are functionally integrated into Nasonia developmental gene regulatory networks.

Genome Biol 2018 09 28;19(1):148. Epub 2018 Sep 28.

Department of Biological Sciences, University of Illinois at Chicago, MBRB 4020, 900 S. Ashland Ave, Chicago, IL, 60607, USA.

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http://dx.doi.org/10.1186/s13059-018-1526-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6161386PMC
September 2018

Ploidy has little effect on timing early embryonic events in the haplo-diploid wasp Nasonia.

Genesis 2017 05 22;55(5). Epub 2017 Apr 22.

University of Illinois at Chicago, Chicago, Illinois.

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http://dx.doi.org/10.1002/dvg.23029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5444945PMC
May 2017

Establishment of F1 hybrid mortality in real time.

BMC Evol Biol 2017 01 26;17(1):37. Epub 2017 Jan 26.

Department of Biological Sciences, Vanderbilt University, Nashville, TN, 37235, USA.

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http://dx.doi.org/10.1186/s12862-017-0879-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5270250PMC
January 2017

Deep, Staged Transcriptomic Resources for the Novel Coleopteran Models Atrachya menetriesi and Callosobruchus maculatus.

PLoS One 2016 1;11(12):e0167431. Epub 2016 Dec 1.

Department of Biological Sciences, University of Illinois at Chicago, Chicago, Illinois, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0167431PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5132259PMC
July 2017

Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface.

Genome Biol 2016 11 11;17(1):227. Epub 2016 Nov 11.

Human Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s13059-016-1088-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5105290PMC
November 2016

Global analysis of dorsoventral patterning in the wasp Nasonia reveals extensive incorporation of novelty in a regulatory network.

BMC Biol 2016 08 1;14:63. Epub 2016 Aug 1.

Department of Biological Sciences, University of Illinois at Chicago, MBRB 4020, 900 S. Ashland Avenue, Chicago, IL, 60402, USA.

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http://dx.doi.org/10.1186/s12915-016-0285-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4968023PMC
August 2016

Emerging developmental genetic model systems in holometabolous insects.

Curr Opin Genet Dev 2016 08 9;39:116-128. Epub 2016 Jul 9.

Department of Biological Sciences, University of Illinois at Chicago, United States. Electronic address:

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http://dx.doi.org/10.1016/j.gde.2016.06.004DOI Listing
August 2016

The evolution of insect germline specification strategies.

Curr Opin Insect Sci 2016 Feb;13:99-105

Department of Biological Sciences, University of Illinois at Chicago, United States. Electronic address:

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http://dx.doi.org/10.1016/j.cois.2016.02.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4827259PMC
February 2016

Dissection of the complex genetic basis of craniofacial anomalies using haploid genetics and interspecies hybrids in Nasonia wasps.

Dev Biol 2016 07 23;415(2):391-405. Epub 2015 Dec 23.

Department of Biological Sciences, University of Illinois at Chicago, Chicago, IL 60607, United States. Electronic address:

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http://dx.doi.org/10.1016/j.ydbio.2015.12.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4914427PMC
July 2016

The expanding genetic toolbox of the wasp Nasonia vitripennis and its relatives.

Authors:
Jeremy A Lynch

Genetics 2015 Apr;199(4):897-904

Department of Biological Sciences, University of Illinois at Chicago, Chicago, Illinois 60607

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http://dx.doi.org/10.1534/genetics.112.147512DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4391559PMC
April 2015

Dorsoventral polarity of the Nasonia embryo primarily relies on a BMP gradient formed without input from Toll.

Curr Biol 2014 Oct 9;24(20):2393-8. Epub 2014 Oct 9.

Institute for Developmental Biology, University of Cologne, 50674 Cologne, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2014.08.035DOI Listing
October 2014

Ancient and diverged TGF-β signaling components in Nasonia vitripennis.

Dev Genes Evol 2014 Dec 11;224(4-6):223-33. Epub 2014 Oct 11.

Institute for Developmental Biology, University of Cologne, Zülpicher Strasse 47b, 50674, Cologne, Germany.

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http://dx.doi.org/10.1007/s00427-014-0481-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4218986PMC
December 2014

Diversity of molecules and mechanisms in establishing insect anterior-posterior polarity.

Authors:
Jeremy A Lynch

Curr Opin Insect Sci 2014 Jul 6;1:39-44. Epub 2014 May 6.

University of Illinois at Chicago, 4020 MBRB, 900 Ashland Ave., Chicago, IL 60607, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cois.2014.05.003DOI Listing
July 2014

Patterning the dorsal-ventral axis of the wasp Nasonia vitripennis.

Dev Biol 2013 Sep 2;381(1):189-202. Epub 2013 Jun 2.

Institute for Developmental Biology, University of Cologne, Zülpichstrasse 47b, 50674 Cologne, Germany.

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http://dx.doi.org/10.1016/j.ydbio.2013.05.026DOI Listing
September 2013

A new component of the Nasonia sex determining cascade is maternally silenced and regulates transformer expression.

PLoS One 2013 22;8(5):e63618. Epub 2013 May 22.

University of Groningen, Center for Ecological and Evolutionary Studies, Evolutionary Genetics, Groningen, The Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0063618PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3661551PMC
April 2014

Comparisons of the embryonic development of Drosophila, Nasonia, and Tribolium.

Wiley Interdiscip Rev Dev Biol 2012 Jan-Feb;1(1):16-39. Epub 2011 Nov 17.

Division of Biology, Kansas State University, Manhattan, Kansas

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http://dx.doi.org/10.1002/wdev.3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5323069PMC
February 2014

The evolution of dorsal-ventral patterning mechanisms in insects.

Genes Dev 2011 Jan;25(2):107-18

Institute for Developmental Biology, University of Cologne, 50674 Cologne, Germany.

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http://dx.doi.org/10.1101/gad.2010711DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3022256PMC
January 2011

Novel modes of localization and function of nanos in the wasp Nasonia.

Development 2010 Nov 7;137(22):3813-21. Epub 2010 Oct 7.

Center for Developmental Genetics, Department of Biology, New York University, New York, NY 10003, USA.

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http://dx.doi.org/10.1242/dev.054213DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3049278PMC
November 2010

EGF signaling and the origin of axial polarity among the insects.

Curr Biol 2010 Jun 13;20(11):1042-7. Epub 2010 May 13.

Institute of Developmental Biology, University of Cologne, Zülpicher Strasse 47b, 50674 Cologne, Germany.

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https://linkinghub.elsevier.com/retrieve/pii/S09609822100050
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http://dx.doi.org/10.1016/j.cub.2010.04.023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2902724PMC
June 2010

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.

Authors:
John H Werren Stephen Richards Christopher A Desjardins Oliver Niehuis Jürgen Gadau John K Colbourne John H Werren Stephen Richards Christopher A Desjardins Oliver Niehuis Jürgen Gadau John K Colbourne Leo W Beukeboom Claude Desplan Christine G Elsik Cornelis J P Grimmelikhuijzen Paul Kitts Jeremy A Lynch Terence Murphy Deodoro C S G Oliveira Christopher D Smith Louis van de Zande Kim C Worley Evgeny M Zdobnov Maarten Aerts Stefan Albert Victor H Anaya Juan M Anzola Angel R Barchuk Susanta K Behura Agata N Bera May R Berenbaum Rinaldo C Bertossa Márcia M G Bitondi Seth R Bordenstein Peer Bork Erich Bornberg-Bauer Marleen Brunain Giuseppe Cazzamali Lesley Chaboub Joseph Chacko Dean Chavez Christopher P Childers Jeong-Hyeon Choi Michael E Clark Charles Claudianos Rochelle A Clinton Andrew G Cree Alexandre S Cristino Phat M Dang Alistair C Darby Dirk C de Graaf Bart Devreese Huyen H Dinh Rachel Edwards Navin Elango Eran Elhaik Olga Ermolaeva Jay D Evans Sylvain Foret Gerald R Fowler Daniel Gerlach Joshua D Gibson Donald G Gilbert Dan Graur Stefan Gründer Darren E Hagen Yi Han Frank Hauser Da Hultmark Henry C Hunter Gregory D D Hurst Shalini N Jhangian Huaiyang Jiang Reed M Johnson Andrew K Jones Thomas Junier Tatsuhiko Kadowaki Albert Kamping Yuri Kapustin Bobak Kechavarzi Jaebum Kim Jay Kim Boris Kiryutin Tosca Koevoets Christie L Kovar Evgenia V Kriventseva Robert Kucharski Heewook Lee Sandra L Lee Kristin Lees Lora R Lewis David W Loehlin John M Logsdon Jacqueline A Lopez Ryan J Lozado Donna Maglott Ryszard Maleszka Anoop Mayampurath Danielle J Mazur Marcella A McClure Andrew D Moore Margaret B Morgan Jean Muller Monica C Munoz-Torres Donna M Muzny Lynne V Nazareth Susanne Neupert Ngoc B Nguyen Francis M F Nunes John G Oakeshott Geoffrey O Okwuonu Bart A Pannebakker Vikas R Pejaver Zuogang Peng Stephen C Pratt Reinhard Predel Ling-Ling Pu Hilary Ranson Rhitoban Raychoudhury Andreas Rechtsteiner Justin T Reese Jeffrey G Reid Megan Riddle Hugh M Robertson Jeanne Romero-Severson Miriam Rosenberg Timothy B Sackton David B Sattelle Helge Schlüns Thomas Schmitt Martina Schneider Andreas Schüler Andrew M Schurko David M Shuker Zilá L P Simões Saurabh Sinha Zachary Smith Victor Solovyev Alexandre Souvorov Andreas Springauf Elisabeth Stafflinger Deborah E Stage Mario Stanke Yoshiaki Tanaka Arndt Telschow Carol Trent Selina Vattathil Eveline C Verhulst Lumi Viljakainen Kevin W Wanner Robert M Waterhouse James B Whitfield Timothy E Wilkes Michael Williamson Judith H Willis Florian Wolschin Stefan Wyder Takuji Yamada Soojin V Yi Courtney N Zecher Lan Zhang Richard A Gibbs

Symmetry breaking during Drosophila oogenesis.

Cold Spring Harb Perspect Biol 2009 Aug;1(2):a001891

Institute of Developmental Biology, University of Cologne, Gyrhofstr. 17, D-50923 Cologne, Germany.

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http://dx.doi.org/10.1101/cshperspect.a001891DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2742093PMC
August 2009

As Tribolium matures as a model insect, Coleopteran Community Congregates in Cologne.

Dev Genes Evol 2009 Oct 29;219(9-10):531-3. Epub 2009 Dec 29.

Institute for Developmental Biology, University of Cologne, Gyrhofstrasse 17, 50931, Cologne, Germany.

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http://dx.doi.org/10.1007/s00427-009-0307-7DOI Listing
October 2009

Evolution of axis formation: mRNA localization, regulatory circuits and posterior specification in non-model arthropods.

Curr Opin Genet Dev 2009 Aug 1;19(4):404-11. Epub 2009 Jun 1.

Institute of Developmental Biology, University of Cologne, D-50923, Germany.

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http://dx.doi.org/10.1016/j.gde.2009.04.009DOI Listing
August 2009

Heads and tails: evolution of antero-posterior patterning in insects.

Biochim Biophys Acta 2009 Apr 11;1789(4):333-42. Epub 2008 Oct 11.

Department of Biology, New York University, New York, NY 10003, USA.

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http://dx.doi.org/10.1016/j.bbagrm.2008.09.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2700975PMC
April 2009

The genome of the model beetle and pest Tribolium castaneum.

Authors:
Stephen Richards Richard A Gibbs George M Weinstock Susan J Brown Robin Denell Richard W Beeman Richard Gibbs Richard W Beeman Susan J Brown Gregor Bucher Markus Friedrich Cornelis J P Grimmelikhuijzen Martin Klingler Marce Lorenzen Stephen Richards Siegfried Roth Reinhard Schröder Diethard Tautz Evgeny M Zdobnov Donna Muzny Richard A Gibbs George M Weinstock Tony Attaway Stephanie Bell Christian J Buhay Mimi N Chandrabose Dean Chavez Kerstin P Clerk-Blankenburg Andrew Cree Marvin Dao Clay Davis Joseph Chacko Huyen Dinh Shannon Dugan-Rocha Gerald Fowler Toni T Garner Jeffrey Garnes Andreas Gnirke Alica Hawes Judith Hernandez Sandra Hines Michael Holder Jennifer Hume Shalini N Jhangiani Vandita Joshi Ziad Mohid Khan LaRonda Jackson Christie Kovar Andrea Kowis Sandra Lee Lora R Lewis Jon Margolis Margaret Morgan Lynne V Nazareth Ngoc Nguyen Geoffrey Okwuonu David Parker Stephen Richards San-Juana Ruiz Jireh Santibanez Joël Savard Steven E Scherer Brian Schneider Erica Sodergren Diethard Tautz Selina Vattahil Donna Villasana Courtney S White Rita Wright Yoonseong Park Richard W Beeman Jeff Lord Brenda Oppert Marce Lorenzen Susan Brown Liangjiang Wang Joël Savard Diethard Tautz Stephen Richards George Weinstock Richard A Gibbs Yue Liu Kim Worley George Weinstock Christine G Elsik Justin T Reese Eran Elhaik Giddy Landan Dan Graur Peter Arensburger Peter Atkinson Richard W Beeman Jim Beidler Susan J Brown Jeffery P Demuth Douglas W Drury Yu-Zhou Du Haruhiko Fujiwara Marce Lorenzen Vincenza Maselli Mizuko Osanai Yoonseong Park Hugh M Robertson Zhijian Tu Jian-jun Wang Suzhi Wang Stephen Richards Henry Song Lan Zhang Erica Sodergren Doreen Werner Mario Stanke Burkhard Morgenstern Victor Solovyev Peter Kosarev Garth Brown Hsiu-Chuan Chen Olga Ermolaeva Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Donna Maglott Kim Pruitt Victor Sapojnikov Alexandre Souvorov Aaron J Mackey Robert M Waterhouse Stefan Wyder Evgeny M Zdobnov Evgeny M Zdobnov Stefan Wyder Evgenia V Kriventseva Tatsuhiko Kadowaki Peer Bork Manuel Aranda Riyue Bao Anke Beermann Nicola Berns Renata Bolognesi François Bonneton Daniel Bopp Susan J Brown Gregor Bucher Thomas Butts Arnaud Chaumot Robin E Denell David E K Ferrier Markus Friedrich Cassondra M Gordon Marek Jindra Martin Klingler Que Lan H Michael G Lattorff Vincent Laudet Cornelia von Levetsow Zhenyi Liu Rebekka Lutz Jeremy A Lynch Rodrigo Nunes da Fonseca Nico Posnien Rolf Reuter Siegfried Roth Joël Savard Johannes B Schinko Christian Schmitt Michael Schoppmeier Reinhard Schröder Teresa D Shippy Franck Simonnet Henrique Marques-Souza Diethard Tautz Yoshinori Tomoyasu Jochen Trauner Maurijn Van der Zee Michel Vervoort Nadine Wittkopp Ernst A Wimmer Xiaoyun Yang Andrew K Jones David B Sattelle Paul R Ebert David Nelson Jeffrey G Scott Richard W Beeman Subbaratnam Muthukrishnan Karl J Kramer Yasuyuki Arakane Richard W Beeman Qingsong Zhu David Hogenkamp Radhika Dixit Brenda Oppert Haobo Jiang Zhen Zou Jeremy Marshall Elena Elpidina Konstantin Vinokurov Cris Oppert Zhen Zou Jay Evans Zhiqiang Lu Picheng Zhao Niranji Sumathipala Boran Altincicek Andreas Vilcinskas Michael Williams Dan Hultmark Charles Hetru Haobo Jiang Cornelis J P Grimmelikhuijzen Frank Hauser Giuseppe Cazzamali Michael Williamson Yoonseong Park Bin Li Yoshiaki Tanaka Reinhard Predel Susanne Neupert Joachim Schachtner Peter Verleyen Florian Raible Peer Bork Markus Friedrich Kimberly K O Walden Hugh M Robertson Sergio Angeli Sylvain Forêt Gregor Bucher Stefan Schuetz Ryszard Maleszka Ernst A Wimmer Richard W Beeman Marce Lorenzen Yoshinori Tomoyasu Sherry C Miller Daniela Grossmann Gregor Bucher

Nature 2008 Apr 23;452(7190):949-55. Epub 2008 Mar 23.

Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/nature06784DOI Listing
April 2008

A method for parental RNA interference in the wasp Nasonia vitripennis.

Nat Protoc 2006 ;1(1):486-94

Department of Biology, New York University, 100 Washington Square East, New York, New York 10003, USA.

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https://www.nyu.edu/projects/desplan/PDF/2006%20Lynch%20RNAi
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http://www.nature.com/doifinder/10.1038/nprot.2006.70
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http://dx.doi.org/10.1038/nprot.2006.70DOI Listing
June 2007

Regulation and function of tailless in the long germ wasp Nasonia vitripennis.

Dev Genes Evol 2006 Jul-Aug;216(7-8):493-8. Epub 2006 May 3.

Center for Developmental genetics, Department of Biology, New York University, 1009 Silver Center, 100 Washington Square East, New York, NY 10003, USA.

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https://www.nyu.edu/projects/desplan/PDF/2006%20Lynch%20Nv%2
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http://link.springer.com/10.1007/s00427-006-0076-5
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http://dx.doi.org/10.1007/s00427-006-0076-5DOI Listing
April 2007

Localized maternal orthodenticle patterns anterior and posterior in the long germ wasp Nasonia.

Nature 2006 Feb;439(7077):728-32

Center for Developmental Genetics, NYU Biology, 100 Washington Square East New York, New York 10003, USA.

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http://dx.doi.org/10.1038/nature04445DOI Listing
February 2006