Publications by authors named "Jeremiah Wala"

26Publications

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.

Nature 2020 02 5;578(7793):102-111. Epub 2020 Feb 5.

The Broad Institute of MIT and Harvard, Cambridge, MA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41586-020-1965-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7054214PMC
February 2020

SeqLib: a C ++ API for rapid BAM manipulation, sequence alignment and sequence assembly.

Bioinformatics 2017 03;33(5):751-753

The Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btw741DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5859992PMC
March 2017

VariantBam: filtering and profiling of next-generational sequencing data using region-specific rules.

Bioinformatics 2016 07 26;32(13):2029-31. Epub 2016 Feb 26.

The Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btw111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4920121PMC
July 2016

CANCER. The oncogene makes its escape.

Science 2016 Mar;351(6280):1398-9

Departments of Medical Oncology and Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA, and Broad Institute, Cambridge, MA 02142, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.aaf5542DOI Listing
March 2016

Pan-cancer patterns of somatic copy number alteration.

Nat Genet 2013 Oct;45(10):1134-40

Broad Institute, Cambridge, Massachusetts, USA; Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA; Biophysics Program, Harvard University, Boston, Massachusetts, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/ng.2760DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3966983PMC
October 2013

Optimal partial-arcs in VMAT treatment planning.

Phys Med Biol 2012 Sep 5;57(18):5861-74. Epub 2012 Sep 5.

Department of Radiation Oncology, Massachusetts General Hospital, 30 Fruit Street, Boston, MA 02114, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1088/0031-9155/57/18/5861DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3548672PMC
September 2012

Exploring trade-offs between VMAT dose quality and delivery efficiency using a network optimization approach.

Phys Med Biol 2012 Sep 14;57(17):5587-600. Epub 2012 Aug 14.

Department of Radiation Oncology, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1088/0031-9155/57/17/5587DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3488960PMC
September 2012

Multicriteria VMAT optimization.

Med Phys 2012 Feb;39(2):686-96

Department of Radiation Oncology, Massachusetts General Hospital, Boston, MA 02114, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1118/1.3675601DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3267794PMC
February 2012