Publications by authors named "Jennifer Fostel"

48Publications

The TGx-28.65 biomarker online application for analysis of transcriptomics data to identify DNA damage-inducing chemicals in human cell cultures.

Environ Mol Mutagen 2017 08 2;58(7):529-535. Epub 2017 Aug 2.

National Institute of Environmental Health Sciences/National Institutes of Health, National Toxicology Program, Research Triangle Park, North Carolina.

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http://dx.doi.org/10.1002/em.22114DOI Listing
August 2017

CEBS: a comprehensive annotated database of toxicological data.

Nucleic Acids Res 2017 01 28;45(D1):D964-D971. Epub 2016 Nov 28.

Division of the National Toxicology Program, National Institute of Environmental Health Sciences, PO Box 12233, Research Triangle Park, NC 27709, USA

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http://dx.doi.org/10.1093/nar/gkw1077DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210559PMC
January 2017

Mining the Archives: A Cross-Platform Analysis of Gene Expression Profiles in Archival Formalin-Fixed Paraffin-Embedded Tissues.

Toxicol Sci 2015 Dec 10;148(2):460-72. Epub 2015 Sep 10.

Department of Physiology and Biophysics, Weill Cornell Medical College, New York, New York 10065; The Feil Family Brain and Mind Research Institute (BMRI), 413 East 69th Street, New York, New York 10021; and The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, 1305 York Avenue, New York, New York 10065

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http://dx.doi.org/10.1093/toxsci/kfv195DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4659533PMC
December 2015

Targeted deletion of nrf2 impairs lung development and oxidant injury in neonatal mice.

Antioxid Redox Signal 2012 Oct 18;17(8):1066-82. Epub 2012 Apr 18.

Laboratory of Respiratory Biology, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, North Carolina 27709, USA.

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http://www.liebertpub.com/doi/10.1089/ars.2011.4288
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http://dx.doi.org/10.1089/ars.2011.4288DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3423869PMC
October 2012

Maximizing biomarker discovery by minimizing gene signatures.

BMC Genomics 2011 Dec 23;12 Suppl 5:S6. Epub 2011 Dec 23.

The Center for Bioinformatics and Institute of Biomedical Sciences, School of Life Science, East China Normal University, 500 Dongchuan Road, Shanghai 200241, China.

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http://dx.doi.org/10.1186/1471-2164-12-S5-S6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3287502PMC
December 2011

Sources of variance in baseline gene expression in the rodent liver.

Mutat Res 2012 Aug 5;746(2):104-12. Epub 2012 Jan 5.

Integrated Systems Toxicology Division, National Health and Environmental Effects Research Lab, US Environmental Protection Agency, Research Triangle Park, NC 27711, USA.

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http://dx.doi.org/10.1016/j.mrgentox.2011.12.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3345317PMC
August 2012

Targeted deletion of Nrf2 reduces urethane-induced lung tumor development in mice.

PLoS One 2011 21;6(10):e26590. Epub 2011 Oct 21.

Department of Pathobiology and Diagnostic Investigation, College of Veterinary Medicine, Michigan State University, East Lansing, Michigan, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0026590PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3198791PMC
February 2012

Prolonged drug selection of breast cancer cells and enrichment of cancer stem cell characteristics.

J Natl Cancer Inst 2010 Nov 8;102(21):1637-52. Epub 2010 Oct 8.

Laboratory of Cell Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1093/jnci/djq361DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2970576PMC
November 2010

Protective role of interleukin-10 in ozone-induced pulmonary inflammation.

Environ Health Perspect 2010 Dec 8;118(12):1721-7. Epub 2010 Sep 8.

National Institute of Environmental Health Sciences, Laboratory of Respiratory Biology, National Institutes of Health, Department of Health and Human Services, Research Triangle Park, North Carolina 27709, USA.

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https://ehp.niehs.nih.gov/doi/10.1289/ehp.1002182
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http://dx.doi.org/10.1289/ehp.1002182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3002191PMC
December 2010

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.

Authors:
Leming Shi Gregory Campbell Wendell D Jones Fabien Campagne Zhining Wen Stephen J Walker Zhenqiang Su Tzu-Ming Chu Federico M Goodsaid Lajos Pusztai John D Shaughnessy André Oberthuer Russell S Thomas Richard S Paules Mark Fielden Bart Barlogie Weijie Chen Pan Du Matthias Fischer Cesare Furlanello Brandon D Gallas Xijin Ge Dalila B Megherbi W Fraser Symmans May D Wang John Zhang Hans Bitter Benedikt Brors Pierre R Bushel Max Bylesjo Minjun Chen Jie Cheng Jing Cheng Jeff Chou Timothy S Davison Mauro Delorenzi Youping Deng Viswanath Devanarayan David J Dix Joaquin Dopazo Kevin C Dorff Fathi Elloumi Jianqing Fan Shicai Fan Xiaohui Fan Hong Fang Nina Gonzaludo Kenneth R Hess Huixiao Hong Jun Huan Rafael A Irizarry Richard Judson Dilafruz Juraeva Samir Lababidi Christophe G Lambert Li Li Yanen Li Zhen Li Simon M Lin Guozhen Liu Edward K Lobenhofer Jun Luo Wen Luo Matthew N McCall Yuri Nikolsky Gene A Pennello Roger G Perkins Reena Philip Vlad Popovici Nathan D Price Feng Qian Andreas Scherer Tieliu Shi Weiwei Shi Jaeyun Sung Danielle Thierry-Mieg Jean Thierry-Mieg Venkata Thodima Johan Trygg Lakshmi Vishnuvajjala Sue Jane Wang Jianping Wu Yichao Wu Qian Xie Waleed A Yousef Liang Zhang Xuegong Zhang Sheng Zhong Yiming Zhou Sheng Zhu Dhivya Arasappan Wenjun Bao Anne Bergstrom Lucas Frank Berthold Richard J Brennan Andreas Buness Jennifer G Catalano Chang Chang Rong Chen Yiyu Cheng Jian Cui Wendy Czika Francesca Demichelis Xutao Deng Damir Dosymbekov Roland Eils Yang Feng Jennifer Fostel Stephanie Fulmer-Smentek James C Fuscoe Laurent Gatto Weigong Ge Darlene R Goldstein Li Guo Donald N Halbert Jing Han Stephen C Harris Christos Hatzis Damir Herman Jianping Huang Roderick V Jensen Rui Jiang Charles D Johnson Giuseppe Jurman Yvonne Kahlert Sadik A Khuder Matthias Kohl Jianying Li Li Li Menglong Li Quan-Zhen Li Shao Li Zhiguang Li Jie Liu Ying Liu Zhichao Liu Lu Meng Manuel Madera Francisco Martinez-Murillo Ignacio Medina Joseph Meehan Kelci Miclaus Richard A Moffitt David Montaner Piali Mukherjee George J Mulligan Padraic Neville Tatiana Nikolskaya Baitang Ning Grier P Page Joel Parker R Mitchell Parry Xuejun Peng Ron L Peterson John H Phan Brian Quanz Yi Ren Samantha Riccadonna Alan H Roter Frank W Samuelson Martin M Schumacher Joseph D Shambaugh Qiang Shi Richard Shippy Shengzhu Si Aaron Smalter Christos Sotiriou Mat Soukup Frank Staedtler Guido Steiner Todd H Stokes Qinglan Sun Pei-Yi Tan Rong Tang Zivana Tezak Brett Thorn Marina Tsyganova Yaron Turpaz Silvia C Vega Roberto Visintainer Juergen von Frese Charles Wang Eric Wang Junwei Wang Wei Wang Frank Westermann James C Willey Matthew Woods Shujian Wu Nianqing Xiao Joshua Xu Lei Xu Lun Yang Xiao Zeng Jialu Zhang Li Zhang Min Zhang Chen Zhao Raj K Puri Uwe Scherf Weida Tong Russell D Wolfinger

Nat Biotechnol 2010 Aug 30;28(8):827-38. Epub 2010 Jul 30.

National Center for Toxicological Research, US Food and Drug Administration, Jefferson, Arkansas, USA.

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http://dx.doi.org/10.1038/nbt.1665DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3315840PMC
August 2010

Creating a controlled vocabulary for the ethics of human research: towards a biomedical ethics ontology.

J Empir Res Hum Res Ethics 2009 Mar;4(1):43-58

Department of Philosophy, Delft University of Technology, Faculty of Technology, Policy and Mangement, Delft, The Netherlands.

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http://dx.doi.org/10.1525/jer.2009.4.1.43DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2725426PMC
March 2009

Towards standards for data exchange and integration and their impact on a public database such as CEBS (Chemical Effects in Biological Systems).

Toxicol Appl Pharmacol 2008 Nov 2;233(1):54-62. Epub 2008 Jul 2.

Global Health Sector, SRA International, Inc., LLC, Durham, North Carolina, USA.

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http://dx.doi.org/10.1016/j.taap.2008.06.015DOI Listing
November 2008

Standardization Initiatives in the (eco)toxicogenomics domain: a review.

Comp Funct Genomics 2004 ;5(8):633-41

EMBL-EBI, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SD, United Kingdom.

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http://dx.doi.org/10.1002/cfg.447DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447477PMC
June 2010

Compound cytotoxicity profiling using quantitative high-throughput screening.

Environ Health Perspect 2008 Mar;116(3):284-91

NIH Chemical Genomics Center, National Institutes of Health, Department of Health and Human Services, Bethesda, Maryland 20892-3370, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/2265061/
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http://dx.doi.org/10.1289/ehp.10727DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2265061PMC
March 2008

A strategy capitalizing on synergies: the Reporting Structure for Biological Investigation (RSBI) working group.

OMICS 2006 ;10(2):164-71

EMBL-EBI, European Nutrigenomics Organisation (NuGO), Hinxton, Cambridge, United Kingdom.

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http://dx.doi.org/10.1089/omi.2006.10.164DOI Listing
November 2007

Predictive ADME-Tox London, UK, 27 -- 28 April 2005.

Authors:
Jennifer Fostel

Expert Opin Drug Metab Toxicol 2005 Oct;1(3):565-70

US National Center for Toxicogenomics, National Institute for Environmental Health Sciences, Lockheed Martin Information Technology, Research Triangle Park, North Carolina, USA.

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http://dx.doi.org/10.1517/17425255.1.3.565DOI Listing
October 2005

Comparison of drug transporter levels in normal colon, colon cancer, and Caco-2 cells: impact on drug disposition and discovery.

Mol Pharm 2006 Jan-Feb;3(1):87-93

Laboratory of Cell Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.

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http://dx.doi.org/10.1021/mp050090kDOI Listing
June 2006

Exploration of the gene expression correlates of chronic unexplained fatigue using factor analysis.

Pharmacogenomics 2006 Apr;7(3):441-54

National Center for Toxicogenomics, NIEHS MD F1-05, 111 Alexander Drive, PO Box 12233, Research Triangle Park, NC 27709-2233, USA.

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http://dx.doi.org/10.2217/14622416.7.3.441DOI Listing
April 2006

Gene expression profile exploration of a large dataset on chronic fatigue syndrome.

Pharmacogenomics 2006 Apr;7(3):429-40

Z-Tech Corporation at NCTR, Division of Bioinformatics, 3900 NCTR Road, Jefferson, AR 72079, USA.

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http://dx.doi.org/10.2217/14622416.7.3.429DOI Listing
April 2006

Modulation of cell adhesion molecules in various epithelial cell lines after treatment with PP2.

Mol Pharm 2005 May-Jun;2(3):170-84

Department of Pharmaceutical Chemistry, The University of Kansas, Lawrence, Kansas 66047, USA.

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http://dx.doi.org/10.1021/mp0499003DOI Listing
August 2005

Effects of an E-cadherin-derived peptide on the gene expression of Caco-2 cells.

Pharm Res 2004 Nov;21(11):2085-94

Department of Pharmaceutical Chemistry, The University of Kansas, Lawrence, Kansas 66047, USA.

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http://dx.doi.org/10.1023/b:pham.0000048201.00143.72DOI Listing
November 2004

Toxicogenomics and systems toxicology: aims and prospects.

Nat Rev Genet 2004 Dec;5(12):936-48

National Center for Toxicogenomics, National Institute of Environmental Health Sciences, PO Box 12233, MD F1-05, 111 Alexander Drive, Research Triangle Park, North Carolina 27709-2233, USA.

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http://www.nature.com/articles/nrg1493
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http://dx.doi.org/10.1038/nrg1493DOI Listing
December 2004

Degradation of transgene-coded and endogenous proteins in the muscles of Caenorhabditis elegans.

Biochem Biophys Res Commun 2003 Dec;312(1):173-7

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.

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http://dx.doi.org/10.1016/j.bbrc.2003.09.248DOI Listing
December 2003