Jeffrey P Spence

Jeffrey P Spence

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Jeffrey P Spence

Jeffrey P Spence

Publications by authors named "Jeffrey P Spence"

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Inference of complex population histories using whole-genome sequences from multiple populations.

Proc Natl Acad Sci U S A 2019 Aug 6;116(34):17115-17120. Epub 2019 Aug 6.

Department of Statistics, University of California, Berkeley, CA 94720;

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http://dx.doi.org/10.1073/pnas.1905060116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6708337PMC
August 2019

Inference of population history using coalescent HMMs: review and outlook.

Curr Opin Genet Dev 2018 12 26;53:70-76. Epub 2018 Jul 26.

Computer Science Division and Department of Statistics, University of California, Berkeley, United States; Chan Zuckerberg Biohub, San Francisco, United States. Electronic address:

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http://dx.doi.org/10.1016/j.gde.2018.07.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6296859PMC
December 2018

Model-based detection and analysis of introgressed Neanderthal ancestry in modern humans.

Mol Ecol 2018 10 17;27(19):3873-3888. Epub 2018 Apr 17.

Department of EECS, University of California, Berkeley, CA, USA.

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http://dx.doi.org/10.1111/mec.14565DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6165692PMC
October 2018

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.

Nature 2016 Oct 21;538(7624):201-206. Epub 2016 Sep 21.

Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1038/nature18964DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5161557PMC
October 2016

Two-Locus Likelihoods Under Variable Population Size and Fine-Scale Recombination Rate Estimation.

Genetics 2016 07 10;203(3):1381-99. Epub 2016 May 10.

Department of Statistics, University of California, Berkeley, California 94720 Computer Science Division, University of California, Berkeley, California 94720 Department of Integrative Biology, University of California, Berkeley, California 94720 Departments of Mathematics and Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104

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http://dx.doi.org/10.1534/genetics.115.184820DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4937484PMC
July 2016

The Site Frequency Spectrum for General Coalescents.

Genetics 2016 Apr 16;202(4):1549-61. Epub 2016 Feb 16.

Department of Statistics, University of California, Berkeley, California 94720 Computer Science Division, University of California, Berkeley, California 94720 Department of Integrative Biology, University of California, Berkeley, California 94720 Department of Mathematics, University of Pennsylvania, Philadelphia, Pennsylvania 19104 Department of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104

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http://dx.doi.org/10.1534/genetics.115.184101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4827730PMC
April 2016