Jeffrey N Martin

Jeffrey N Martin

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Jeffrey N Martin

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Stimulant Use and Viral Suppression in the Era of Universal Antiretroviral Therapy.

J Acquir Immune Defic Syndr 2019 Jan;80(1):89-93

Department of Medicine, University of California, San Francisco School of Medicine, San Francisco, CA.

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http://Insights.ovid.com/crossref?an=00126334-201901010-0001
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http://dx.doi.org/10.1097/QAI.0000000000001867DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6289664PMC
January 2019

Infection Staging and Incidence Surveillance Applications of High Dynamic Range Diagnostic Immuno-Assay Platforms.

J Acquir Immune Defic Syndr 2017 12;76(5):547-555

*South African Centre for Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa; †National Infection Service, Public Health England, London, United Kingdom; ‡Blood Systems Research Institute, San Francisco, CA; §School of Medicine, University of California, San Francisco, San Francisco, CA; ‖Division of Infectious Diseases, Department of Medicine, University of California, San Diego, San Diego, CA; ¶Department of Medical Affairs, International AIDS Vaccine Initiative (IAVI), New York City, NY; and #Division of Clinical Immunology and Allergy, School of Medicine, University of São Paulo, São Paulo, Brazil.

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http://dx.doi.org/10.1097/QAI.0000000000001537DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5680100PMC
December 2017

Association of HIV-1 Gag-Specific IgG Antibodies With Natural Control of HIV-1 Infection in Individuals Not Carrying HLA-B*57: 01 Is Only Observed in Viremic Controllers.

J Acquir Immune Defic Syndr 2017 11;76(3):e90-e92

*School of Biomedical Sciences, University of Western Australia, Perth, Western Australia, Australia †Division of Clinical Epidemiology, University of California, San Francisco, CA ‡School of Medicine, University of California, San Francisco, CA §Stem Cell Unit, Institute of Respiratory Health, Perth, Western Australia, Australia ‖Department of Microbiology and Infectious Diseases, Royal Perth Hospital and PathWest Laboratory Medicine, Perth, Western Australia, Australia ¶School of Biomedical Sciences, Curtin University, Perth, Western Australia, Australia #Medical School, University of Western Australia, Perth, Western Australia, Australia **Department of Clinical Immunology, Royal Perth Hospital and PathWest Laboratory Medicine, Perth, Western Australia, Australia.

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http://dx.doi.org/10.1097/QAI.0000000000001477DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5634911PMC
November 2017

Prevalence and clinical impacts of HIV-1 intersubtype recombinants in Uganda revealed by near-full-genome population and deep sequencing approaches.

AIDS 2017 11;31(17):2345-2354

aBC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada bMbarara University of Science and Technology, Mbarara, Uganda cHarvard Medical School dHarvard School of Public Health eMassachusetts General Hospital, Boston, Massachusetts fOregon Health Sciences University, Portland, Oregon gUniversity of California, San Francisco, California, USA. *P. Richard Harrigan and Guinevere Q. Lee equally contributed to this article.

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http://dx.doi.org/10.1097/QAD.0000000000001619DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5656522PMC
November 2017

Brief Report: Appraising Viral Load Thresholds and Adherence Support Recommendations in the World Health Organization Guidelines for Detection and Management of Virologic Failure.

J Acquir Immune Defic Syndr 2017 10;76(2):183-187

*Department of Medicine, Massachusetts General Hospital, Boston, MA; †Epicentre Mbarara Research Centre, Mbarara, Uganda; ‡Mbarara University of Science and Technology, Mbarara, Uganda; §Harvard Medical School, Boston, MA; Departments of ‖Epidemiology and Biostatistics; ¶Medicine, University of California San Francisco School of Medicine, San Francisco, CA; #Division of Infectious Diseases, Emory University School of Medicine, Atlanta, GA; and **Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA.

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http://dx.doi.org/10.1097/QAI.0000000000001479DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5597473PMC
October 2017

Brief Report: Should Abacavir Be a First-Line Alternative for Adults With HIV in Sub-Saharan Africa?

J Acquir Immune Defic Syndr 2017 10;76(2):188-192

*BC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada; †Department of Infectious Diseases, Massachusetts General Hospital, Boston, MA; ‡Harvard University Center for AIDS Research, Harvard Medical School, Boston, MA; §Faculty of Medicine, Mbarara University of Science and Technology, Mbarara, Uganda; ‖HIV/AIDS division, University of California, San Francisco, CA; ¶Gladstone Institute of Virology and Immunology, University of California, San Francisco, CA; #School of Public Health, Oregon Health Sciences University, Portland, OR; and **Center for Cancer Research, National Cancer Institute, Frederick, MD.

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http://dx.doi.org/10.1097/QAI.0000000000001487DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5597467PMC
October 2017

Potential for immune-driven viral polymorphisms to compromise antiretroviral-based preexposure prophylaxis for prevention of HIV-1 infection.

AIDS 2017 09;31(14):1935-1943

aAIDS Clinical Center, National Center for Global Health and Medicine, Tokyo bCenter for AIDS Research, Kumamoto University, Kumamoto, Japan cFaculty of Health Sciences, Simon Fraser University, Burnaby dBritish Columbia Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada eDepartment of Paediatrics, University of Oxford, Oxford, UK fCentre for Research in Infectious Diseases, National Institute of Respiratory Diseases, Mexico City, Mexico gInfectious Diseases Clinic, Roosevelt Hospital, Guatemala City, Guatemala hNational Hospital of Tropical Diseases, Dong Da District, Hanoi, Vietnam iHIV National Laboratory, Honduran Ministry of Health jHospital Escuela Universitario, Tegucigalpa, Honduras kGorgas Memorial Institute for Health Studies, Panama City, Panama lHospital Metropolitano Vivian Pellas, Managua, Nicaragua mMinistry of Health, Belmopan, Belize nUniversity of California San Francisco, San Francisco, California oCancer and Inflammation Program, Leidos Biomedical Research, Inc., Frederick National Laboratory, Frederick, Maryland pRagon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts, USA qMurdoch University, Perth, Australia rVanderbilt University, Nashville, Tennessee, USA sDepartment of Pathology and Laboratory Medicine, Western University, London, Ontario, Canada.

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http://Insights.ovid.com/crossref?an=00002030-201709100-0000
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http://dx.doi.org/10.1097/QAD.0000000000001575DOI Listing
September 2017

Increased Risk of Myocardial Infarction in HIV-Infected Individuals in North America Compared With the General Population.

J Acquir Immune Defic Syndr 2017 08;75(5):568-576

*Department of Medicine, University of Washington School of Medicine, Seattle, WA; †Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD; ‡Department of Medicine, University of North Carolina School of Medicine, Chapel Hill, NC; §Department of Medicine, University of Alabama School of Medicine, Birmingham, AL; ‖Department of Medicine, University of California San Diego, San Diego, CA; ¶Kaiser Permanente Division of Research, Oakland, CA; #Department of Medicine, Vanderbilt University School of Medicine, Nashville, TN; **Department of Epidemiology, University of Washington School of Public Health, Seattle, WA; ††Department of Medicine, David Geffen School of Medicine at University of California Los Angeles, Los Angeles, CA; ‡‡Department of Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL; §§Department of Medicine, George Washington University School of Medicine, Washington, DC; ‖‖Department of Clinical Investigations, Whitman Walker Health, Washington, DC; ¶¶Department of Epidemiology & Biostatistics, University of California San Francisco, San Francisco, CA; ##Division of HIV/AIDS Prevention, National Center for HIV/AIDS, Viral Hepatitis, STD and TB Prevention, Centers for Disease Control and Prevention, Atlanta, GA; ***Department of Medicine, Yale School of Public Health, New Haven, CT; †††Department of Infectious Diseases, San Leandro Medical Center, San Leandro, CA; and ‡‡‡Department of Medicine, Johns Hopkins University, Baltimore, MD.

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http://dx.doi.org/10.1097/QAI.0000000000001450DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5522001PMC
August 2017

Anti-HERV-K (HML-2) capsid antibody responses in HIV elite controllers.

Retrovirology 2017 Aug 22;14(1):41. Epub 2017 Aug 22.

Division of Experimental Medicine, Department of Medicine, University of California, San Francisco, San Francisco, CA, USA.

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http://dx.doi.org/10.1186/s12977-017-0365-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5568399PMC
August 2017

Real-time electronic adherence monitoring plus follow-up improves adherence compared with standard electronic adherence monitoring.

AIDS 2017 01;31(1):169-171

aMassachusetts General Hospital Global Health and Harvard Medical School, Boston, Massachusetts, USA bMbarara University of Science and Technology, Mbarara, Uganda cEpicentre Mbarara Research Centre, Mbarara, Uganda dUniversity of California, San Francisco, California, USA.

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http://dx.doi.org/10.1097/QAD.0000000000001310DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5280076PMC
January 2017

Performance of the Bio-Rad Geenius HIV1/2 Supplemental Assay in Detecting "Recent" HIV Infection and Calculating Population Incidence.

J Acquir Immune Defic Syndr 2016 Dec;73(5):581-588

*Blood Systems Research Institute, San Francisco, CA; †University of California, San Francisco, San Francisco, CA; ‡The South African DST/NRF Centre of Excellence Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa; §Department of Statistical Sciences, University of Cape Town, Cape Town, South Africa; ‖Public Health England, London, United Kingdom; ¶University of California, San Diego, San Diego, CA; #Department of Medical Affairs, International AIDS Vaccine Initiative (IAVI), New York, NY; and **Division of Clinical Immunology and Allergy, School of Medicine, University of São Paulo, São Paulo, Brazil.

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http://dx.doi.org/10.1097/QAI.0000000000001146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5110377PMC
December 2016

D-Dimer Levels and Traditional Risk Factors Are Associated With Incident Hypertension Among HIV-Infected Individuals Initiating Antiretroviral Therapy in Uganda.

J Acquir Immune Defic Syndr 2016 Dec;73(4):396-402

*Department of Internal Medicine, Mbarara University of Science and Technology, Mbarara, Uganda; †Department of Epidemiology, Harvard T.H Chan School of Public Health, Boston, MA; ‡Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA; §Epicentre Mbarara Research Centre, Mbarara, Uganda; ‖Center for Global Health, Massachusetts General Hospital, Boston, MA; ¶Harvard Medical School, Massachusetts General Hospital, Boston, MA; #Department of Bioengineering and Therapeutic Sciences, School of Pharmacy, University of California, San Francisco, CA; **Department of Biology, Boston College, Chestnut Hill, MA; ††Department of Pathology and Laboratory Medicine, University of Vermont, Burlington, VT; ‡‡Department of Global Health and Populations, Harvard T.H Chan School of Public Health, Boston, MA; and §§Department of Medicine, University of California, San Francisco, CA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5085880PMC
http://dx.doi.org/10.1097/QAI.0000000000001074DOI Listing
December 2016

Relationship Power and Sexual Violence Among HIV-Positive Women in Rural Uganda.

AIDS Behav 2016 09;20(9):2045-53

Division of HIV/AIDS, Department of Medicine, University of California - San Francisco, San Francisco, USA.

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http://dx.doi.org/10.1007/s10461-016-1385-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4996683PMC
September 2016

Viral load criteria and threshold optimization to improve HIV incidence assay characteristics.

AIDS 2016 09;30(15):2361-71

aThe South African DST/NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch bDepartment of Statistical Sciences, University of Cape Town, Cape Town, South Africa cUniversity of California dBlood Systems Research Institute, San Francisco, California, USA ePublic Health England, London, UK fInternational AIDS Vaccine Initiative (IAVI), Department of Medical Affairs, New York City, New York gDepartment of Medicine, University of California San Diego, San Diego, California, USA hDivision of Clinical Immunology and Allergy, School of Medicine, University of São Paulo, São Paulo, Brazil. *Christopher D. Pilcher and Alex Welte contributed equally to the writing of this article.

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http://dx.doi.org/10.1097/QAD.0000000000001209DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5024345PMC
September 2016

Endothelin-1 Predicts Hemodynamically Assessed Pulmonary Arterial Hypertension in HIV Infection.

PLoS One 2016 11;11(1):e0146355. Epub 2016 Jan 11.

San Francisco General Hospital Cardiology Division, University of California San Francisco, San Francisco, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0146355PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4709102PMC
July 2016

Host genetic predictors of the kynurenine pathway of tryptophan catabolism among treated HIV-infected Ugandans.

AIDS 2016 07;30(11):1807-15

aDepartment of Medicine bDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California cDepartment of Medicine, Vanderbilt University School of Medicine dDepartment of Medicine, Meharry Medical College, Nashville, Tennessee, USA eDepartment of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland fRIKEN Center for Genomic Medicine, Kanagawa, Japan gDepartment of Medicine, Mbarara University of Science and Technology, Mbarara, Uganda.

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http://pdfs.journals.lww.com/aidsonline/2016/07170/Host_gene
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http://dx.doi.org/10.1097/QAD.0000000000001124DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4925250PMC
July 2016

Non-R5-tropic HIV-1 in subtype A1 and D infections were associated with lower pretherapy CD4+ cell count but not with PI/(N)NRTI therapy outcomes in Mbarara, Uganda.

AIDS 2016 07;30(11):1781-8

aBC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada bMbarara University of Science and Technology, Mbarara, Uganda cUniversity of California, San Francisco, California dHarvard Medical School eHarvard School of Public Health fMassachusetts General Hospital, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1097/QAD.0000000000001128DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4925292PMC
July 2016

Immunologic profiles distinguish aviremic HIV-infected adults.

AIDS 2016 06;30(10):1553-62

aDepartment of Biostatistics, University of California at Los Angeles, Los AngelesbDepartment of Medicine, University of California at San Francisco, San Francisco, California, USA.

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http://dx.doi.org/10.1097/QAD.0000000000001049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5679214PMC
June 2016

Association between Guillain-Barré syndrome and Zika virus infection.

Lancet 2016 Jun;387(10038):2599

Department of Epidemiology and Biostatistics, University of California, San Francisco, CA, USA.

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http://dx.doi.org/10.1016/S0140-6736(16)30843-1DOI Listing
June 2016

Mitral Annular and Coronary Artery Calcification Are Associated with Mortality in HIV-Infected Individuals.

PLoS One 2015 1;10(7):e0130592. Epub 2015 Jul 1.

Division of Cardiology, Department of Medicine, San Francisco General Hospital, University of California, San Francisco, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0130592PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4488486PMC
April 2016

HIV-Infected Ugandan Women on Antiretroviral Therapy Maintain HIV-1 RNA Suppression Across Periconception, Pregnancy, and Postpartum Periods.

J Acquir Immune Defic Syndr 2016 Apr;71(4):399-406

*Division of Infectious Disease, Center for Global Health, Massachusetts General Hospital, Boston, MA; †Center for Biostatistics in AIDS Research, Harvard T.H. Chan School of Public Health, Boston, MA; ‡Faculty of Health Sciences, Simon Fraser University, Burnaby BC, Canada; §Bennett Statistical Consulting, Ballston Lake, NY; ‖Mbarara University of Science and Technology, Mbarara, Uganda; Departments of ¶Medicine, and #Epidemiology and Biostatistics, University of California at San Francisco, San Francisco, CA; **Epicentre Mbarara, Mbarara, Uganda; ††Department of General Medicine, Center for Global Health, Massachusetts General Hospital, Boston, MA.

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http://dx.doi.org/10.1097/QAI.0000000000000874DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4943862PMC
April 2016

HIV infection and arterial stiffness among older-adults taking antiretroviral therapy in rural Uganda.

AIDS 2016 Feb;30(4):667-70

aDivision of Infectious Diseases, Department of Medicine, Massachusetts General Hospital bMassachusetts General Hospital Center for Global Health cHarvard Medical School dDepartment of Medicine, Brigham and Women's Hospital, Boston, MA, USA eFaculty of Internal Medicine, Mbarara University of Science and Technology, Mbarara, Uganda fDivision of Cardiology, Department of Medicine, Massachusetts General Hospital, Boston, MA gUniversity of California, San Francisco, CA, USA hEpicentre Research Base, Mbarara, Uganda iRagon Institute of MGH, MIT and Harvard, Boston, MA, USA jDepartment of Microbiology, Mbarara University of Science and Technology, Mbarara, Uganda.

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http://dx.doi.org/10.1097/QAD.0000000000000992DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4733585PMC
February 2016

Duration of Antiretroviral Therapy Adherence Interruption Is Associated With Risk of Virologic Rebound as Determined by Real-Time Adherence Monitoring in Rural Uganda.

J Acquir Immune Defic Syndr 2015 Dec;70(4):386-92

*Center for Global Health, Massachusetts General Hospital, Boston, MA; †Department of Medicine, Harvard Medical School, Boston, MA; ‡Global Health Collaboration, Mbarara University of Science and Technology, Mbarara, Uganda; §EpiCentre/Médecins Sans Frontières, Mbarara, Uganda; ‖Department of Medical Laboratory Sciences, Mbarara University of Science and Technology, Mbarara, Uganda; Departments of ¶Epidemiology and Biostatistics; #Medicine, University of California, San Francisco, CA; and **Department of Global Health and Populations, Harvard T.H. Chan School of Public Health, Boston, MA.

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http://dx.doi.org/10.1097/QAI.0000000000000737DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4624495PMC
December 2015

Implementation of electronic medical records requires more than new software: Lessons on integrating and managing health technologies from Mbarara, Uganda.

Healthc (Amst) 2015 Dec 26;3(4):264-9. Epub 2015 Sep 26.

Brigham and Women's Hospital, Boston, MA, USA; Global Health Delivery Project at Harvard University, Cambridge, MA, USA; Harvard Medical School, Boston, MA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.hjdsi.2015.08.006DOI Listing
December 2015

The Kynurenine Pathway of Tryptophan Catabolism and AIDS-Associated Kaposi Sarcoma in Africa.

J Acquir Immune Defic Syndr 2015 Nov;70(3):296-303

*Mbarara University of Science and Technology, Mbarara, Uganda; †University of California, San Francisco, CA; ‡Infectious Diseases Institute, Kampala, Uganda; §Uganda Cancer Institute, Kampala, Uganda; ‖Centers for Disease Control and Prevention, Atlanta, GA; ¶Massachusetts General Hospital, Center for Global Health, Harvard Medical School, Boston, MA; and #Uganda Virus Research Institute, Entebbe, Uganda.

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http://dx.doi.org/10.1097/QAI.0000000000000747DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4607630PMC
November 2015

Comparison of self-reported alcohol consumption to phosphatidylethanol measurement among HIV-infected patients initiating antiretroviral treatment in southwestern Uganda.

PLoS One 2014 1;9(12):e113152. Epub 2014 Dec 1.

Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, California, United States of America; Department of Medicine, University of California San Francisco, San Francisco, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0113152PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4249861PMC
September 2015

Novel Biomarkers of Cardiac Stress, Cardiovascular Dysfunction, and Outcomes in HIV-Infected Individuals.

JACC Heart Fail 2015 Aug 8;3(8):591-9. Epub 2015 Jul 8.

Division of Cardiology, Department of Medicine, San Francisco General Hospital, University of California-San Francisco, San Francisco, California. Electronic address:

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http://dx.doi.org/10.1016/j.jchf.2015.03.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4529774PMC
August 2015

Epigenetic mechanisms, T-cell activation, and CCR5 genetics interact to regulate T-cell expression of CCR5, the major HIV-1 coreceptor.

Proc Natl Acad Sci U S A 2015 Aug 11;112(34):E4762-71. Epub 2015 Aug 11.

Veterans Administration Research Center for AIDS and HIV-1 Infection, South Texas Veterans Health Care System, San Antonio, TX 78229; Center for Personalized Medicine, South Texas Veterans Health Care System, San Antonio, TX 78229; Department of Medicine, University of Texas Health Science Center, San Antonio, TX 78229; Department of Microbiology, University of Texas Health Science Center, San Antonio, TX 78229;

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http://dx.doi.org/10.1073/pnas.1423228112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4553789PMC
August 2015

Viremic HIV Controllers Exhibit High Plasmacytoid Dendritic Cell-Reactive Opsonophagocytic IgG Antibody Responses against HIV-1 p24 Associated with Greater Antibody Isotype Diversification.

J Immunol 2015 Jun 24;194(11):5320-8. Epub 2015 Apr 24.

School of Pathology and Laboratory Medicine, University of Western Australia, Perth, Western Australia 6009, Australia; Department of Clinical Immunology, Royal Perth Hospital and PathWest Laboratory Medicine, Perth, Western Australia 6000, Australia;

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http://www.jimmunol.org/cgi/doi/10.4049/jimmunol.1402918
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http://dx.doi.org/10.4049/jimmunol.1402918DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4492937PMC
June 2015

Viremic control and viral coreceptor usage in two HIV-1-infected persons homozygous for CCR5 Δ32.

AIDS 2015 May;29(8):867-76

aBrigham and Women's Hospital bHarvard Medical School, Boston, Massachusetts, USA cInfektionsmedizinisches Centrum Hamburg dInfektionsdiagnostik Labor Lademannbogen, Hamburg, Germany eUniversity of California, San Francisco fRagon Institute of MGH, MIT and Harvard, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1097/QAD.0000000000000629DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4473772PMC
May 2015

Implementation and operational research: evaluating outcomes of patients lost to follow-up in a large comprehensive care treatment program in western Kenya.

J Acquir Immune Defic Syndr 2015 Apr;68(4):e46-55

*Academic Model Providing Access To Healthcare, Eldoret, Kenya; †Division of Epidemiology, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada; ‡Department of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, CA; §Moi University School of Public Health, Kenya; Departments of ‖Behavioral Sciences; and ¶Medicine, School of Medicine, College of Health Sciences, Moi University, Eldoret, Kenya.

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http://dx.doi.org/10.1097/QAI.0000000000000492DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4348019PMC
April 2015

Estimation of mortality among HIV-infected people on antiretroviral treatment in East Africa: a sampling based approach in an observational, multisite, cohort study.

Lancet HIV 2015 03 28;2(3):e107-16. Epub 2015 Jan 28.

Division of HIV/AIDS at San Francisco General Hospital in the Department of Medicine, University of California, San Francisco, CA, USA; Department of Epidemiology and Biostatistics, University of California, San Francisco, CA, USA; East Africa International Epidemiologic Databases to Evaluate AIDS (EA-IeDEA) Consortium.

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http://dx.doi.org/10.1016/S2352-3018(15)00002-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4480204PMC
March 2015

The factor structure and presentation of depression among HIV-positive adults in Uganda.

AIDS Behav 2015 Jan;19(1):27-33

Department of Psychiatry, Behavioral Medicine Service, Massachusetts General Hospital, One Bowdoin Square, 7th Floor, Boston, MA, 02114, USA,

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http://dx.doi.org/10.1007/s10461-014-0796-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4360967PMC
January 2015

Persistent HIV-related stigma in rural Uganda during a period of increasing HIV incidence despite treatment expansion.

AIDS 2015 Jan;29(1):83-90

aDivision of Infectious Diseases, Massachusetts General Hospital bDivision of Infectious Diseases, Brigham and Women's Hospital cHarvard Medical School, Boston, Massachusetts dDivision of HIV/AIDS, San Francisco General Hospital, University of California at San Francisco (UCSF) eCenter for AIDS Prevention Studies, UCSF, San Francisco, California, USA fEpicentre, Mbarara, Uganda gMassachusetts General Hospital Center for Global Health, Boston, Massachusetts hDepartment of Epidemiology and Biostatistics, UCSF, San Francisco, California iDivision of Infectious Diseases, Beth Israel Deaconess Medical Center jFenway Health, Boston, Massachusetts, USA kMbarara University of Science and Technology, Mbarara, Uganda lChester M. Pierce, MD Division of Global Psychiatry, Massachusetts General Hospital, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1097/QAD.0000000000000495DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4286463PMC
January 2015

Gut epithelial barrier and systemic inflammation during chronic HIV infection.

AIDS 2015 Jan;29(1):43-51

aDivision of Gastroenterology, Department of Medicine, University of California, San Francisco (UCSF), San Francisco, California bAIDS and Cancer Virus Program, Leidos Biomedical Research Inc., Frederick National Laboratory for Cancer Research, Frederick, Maryland cDivision of Experimental Medicine, Department of Medicine, UCSF, San Francisco, California dDivision of Gastroenterology, Department of Medicine, University of Washington, Washington eDepartment of Epidemiology and Biostatistics fHIV/AIDS Division, Department of Medicine, UCSF, San Francisco, California, USA.

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http://dx.doi.org/10.1097/QAD.0000000000000511DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4444362PMC
January 2015

Depression during pregnancy and the postpartum among HIV-infected women on antiretroviral therapy in Uganda.

J Acquir Immune Defic Syndr 2014 Dec;67 Suppl 4:S179-87

*Faculty of Health Sciences, Simon Fraser University, Burnaby, Canada; †Center for Global Health & Division of Infectious Disease, Massachusetts General Hospital, Boston, MA; ‡Mbarara University of Science and Technology, Mbarara, Uganda; §Harvard Medical School, Boston, MA; ‖Division of Global Psychiatry, Department of Psychiatry, Massachusetts General Hospital, Boston, MA; ¶Center for Global Health, Massachusetts General Hospital, Boston, MA; #School of Population and Public Health, University of British Columbia, Vancouver, Canada; **Department of Psychiatry, Massachusetts General Hospital/Harvard Medical School, Boston, MA; ††Epicentre Mbarara, Mbarara, Uganda; ‡‡Center for Global Health & Department of Medicine, Massachusetts General Hospital, Boston, MA; and §§University of California, San Francisco (UCSF), San Francisco, CA.

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December 2014

Composition and function of T cell subpopulations are slow to change despite effective antiretroviral treatment of HIV disease.

PLoS One 2014 21;9(1):e85613. Epub 2014 Jan 21.

Positive Health Program, University of California San Francisco, San Francisco, California, United States of America ; Division of Experimental Medicine, University of California San Francisco, San Francisco, California, United States of America.

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October 2014

Impact of HIV on CD8+ T cell CD57 expression is distinct from that of CMV and aging.

PLoS One 2014 27;9(2):e89444. Epub 2014 Feb 27.

Departments of Medicine, Epidemiology and Biostatistics, University of California San Francisco, San Francisco, California, United States of America.

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October 2014

Independent assessment of candidate HIV incidence assays on specimens in the CEPHIA repository.

AIDS 2014 Oct;28(16):2439-49

aThe South African DST/NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch bSchool of Computational and Applied Mathematics, University of the Witwatersrand, Johannesburg, South Africa cUniversity of California, San Francisco dBlood Systems Research Institute, San Francisco, California, USA ePublic Health England, London, UK fInternational AIDS Vaccine Initiative (IAVI), Department of Medical Affairs, New York City, New York gUniversity of California San Diego, Department of Medicine, San Diego, California, USA hDivision of Clinical Immunology and Allergy, School of Medicine, University of São Paulo, São Paulo, Brazil.

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October 2014

Higher CD27+CD8+ T cells percentages during suppressive antiretroviral therapy predict greater subsequent CD4+ T cell recovery in treated HIV infection.

PLoS One 2013 31;8(12):e84091. Epub 2013 Dec 31.

Division of Experimental Medicine, Department of Medicine, San Francisco General Hospital, University of California San Francisco, San Francisco, California, United States of America.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3877182PMC
September 2014

Cutting edge: An antibody recognizing ancestral endogenous virus glycoproteins mediates antibody-dependent cellular cytotoxicity on HIV-1-infected cells.

J Immunol 2014 Aug 14;193(4):1544-8. Epub 2014 Jul 14.

Division of Experimental Medicine, Department of Medicine, University of California, San Francisco, San Francisco, CA 94110; Department of Microbiology, Immunology, and Tropical Medicine, The George Washington University, Washington, DC 20037;

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August 2014

Empiric deworming and CD4 count recovery in HIV-infected Ugandans initiating antiretroviral therapy.

PLoS Negl Trop Dis 2014 Aug 7;8(8):e3036. Epub 2014 Aug 7.

Center for Global Health, Massachusetts General Hospital, Boston, Massachusetts, United States of America; Division of Infectious Diseases, Department of Medicine, Massachusetts General Hospital, Boston, Massachusetts, United States of America.

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August 2014

Tobacco use among adults initiating treatment for HIV infection in rural Uganda.

AIDS Behav 2014 Jul;18(7):1381-9

Division of General Medicine, Department of Medicine, Massachusetts General Hospital, 50 Staniford Street, 9th Floor, Boston, MA, 02114, USA,

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July 2014

Programmed death-1 expression on CD4⁺ and CD8⁺ T cells in treated and untreated HIV disease.

AIDS 2014 Jul;28(12):1749-58

aHIV/AIDS Division, San Francisco General Hospital bDivision of Experimental Medicine cDepartment Epidemiology and Biostatistics, UCSF, San Francisco, California dVaccine and Gene Therapy Institute of Florida, Port St. Lucie, Florida, USA.

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July 2014

CD4+ cell count at antiretroviral therapy initiation and economic restoration in rural Uganda.

AIDS 2014 May;28(8):1221-6

aDepartment of Medicine bCenter for Global Health, Massachusetts General Hospital, Boston, Massachusetts cDepartment of Health Policy and Management, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, North Carolina, USA dMédecins Sans Frontières Epicentre eMbarara University of Science and Technology, Mbarara, Uganda fUniversity of California, San Francisco School of Medicine, San Francisco, California gRagon Institute of MGH, MIT, and Harvard University hDepartment of Global Health and Population, Harvard School of Public Health iDepartment of Psychiatry, Massachusetts General Hospital jRobert Wood Johnson Health and Society Scholars Program, Harvard University, Boston, Massachusetts, USA.

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May 2014

A closer look at hepatitis C clearance in HIV controllers: a response.

AIDS 2014 May;28(8):1241-2

aDepartment of Community Health Systems, School of Nursing bDepartment of Epidemiology & Biostatistics cDepartment of Medicine, University of California San Francisco dBlood Systems Research Institute, San Francisco, California. USA.

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May 2014

Reversal of the Kynurenine pathway of tryptophan catabolism may improve depression in ART-treated HIV-infected Ugandans.

J Acquir Immune Defic Syndr 2014 Apr;65(4):456-62

*Norwegian Center for Addiction Research, University of Oslo, Oslo, Norway; †Alcohol Research Group, School of Public Health, University of California, Berkeley, CA; ‡Center for Global Health, Massachusetts General Hospital, Boston, MA; §Division of Global Psychiatry, Department of Psychiatry, Massachusetts General Hospital, Boston, MA; ‖Mbarara University of Science and Technology, Mbarara, Uganda; ¶University of California at San Francisco, San Francisco, CA; #Division of HIV/AIDS, San Francisco General Hospital, University of California San Francisco, CA; **Department of Global Health and Social Medicine, Harvard Medical School, Boston, MA; ††Department of Global Health and Population, Harvard School of Public Health, Boston, MA; and ‡‡Ragon Institute of Massachusetts General Hospital, MIT and Harvard, Boston, MA.

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April 2014

Point-of-care C-reactive protein testing to facilitate implementation of isoniazid preventive therapy for people living with HIV.

J Acquir Immune Defic Syndr 2014 Apr;65(5):551-6

*Division of Pulmonary and Critical Care Medicine, Department of Medicine, †Curry International Tuberculosis Center, and ‡HIV/AIDS Division, Department of Medicine, San Francisco General Hospital, University of California, San Francisco, CA; §Department of Medicine, Mbarara University of Science and Technology, Mbarara, Uganda; ‖Department of Epidemiology and Biostatistics, University of California, San Francisco, CA; ¶Department of Internal Medicine, University of California, San Francisco, CA; **Center for Global Health, Massachusetts General Hospital, Harvard Medical School, Boston, MA; ††Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard Medical School, Boston, MA; and ‡‡Department of Medicine, Makerere University, Kampala, Uganda.

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April 2014

Increased levels of asymmetric dimethylarginine are associated with pulmonary arterial hypertension in HIV infection.

AIDS 2014 Feb;28(4):511-9

aDepartment of Medicine, University of California San Francisco bDivision of Endocrinology and Metabolism, San Francisco VA Medical Center cSan Francisco General Hospital Cardiology Division, University of California San Francisco, San Francisco dOxonon BioAnalysis, Emeryville eSan Francisco General Hospital Positive Health Program, University of California San Francisco, San Francisco, California, USA.

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February 2014

Treatment as long-term prevention: sustained reduction in HIV sexual transmission risk with use of antiretroviral therapy in rural Uganda.

AIDS 2014 Jan;28(2):267-71

aMassachusetts General Hospital, Center for Global Health, Boston, Massachusetts, USA bMbarara University of Science and Technology, Mbarara, Uganda cChester M. Pierce MD Division of Global Psychiatry, Department of Psychiatry, Massachusetts General Hospital, Boston, Massachusetts, USA dUniversity of California, San Francisco, California, USA eRagon Institute of Massachusetts General Hospital MIT and Harvard, and Harvard Medical School, Boston, Massachusetts, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4038415PMC
January 2014

CD56negCD16⁺ NK cells are activated mature NK cells with impaired effector function during HIV-1 infection.

Retrovirology 2013 Dec 18;10:158. Epub 2013 Dec 18.

Division of Experimental Medicine, Department of Medicine, University of California, San Francisco, CA 94110, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3892122PMC
December 2013

Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.

AIDS 2013 Sep;27(14):2255-60

aDepartment of Medicine bDepartment of Epidemiology and Biostatistics, University of California cSan Francisco Veterans Affairs Medical Center, San Francisco, California, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143147PMC
September 2013