Jeffrey G Lawrence

Jeffrey G Lawrence

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Jeffrey G Lawrence

Jeffrey G Lawrence

Publications by authors named "Jeffrey G Lawrence"

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Chromosome architecture constrains horizontal gene transfer in bacteria.

PLoS Genet 2018 05 29;14(5):e1007421. Epub 2018 May 29.

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1007421DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5993296PMC
May 2018

Selection, periodicity and potential function for Highly Iterative Palindrome-1 (HIP1) in cyanobacterial genomes.

Nucleic Acids Res 2018 03;46(5):2265-2278

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213, USA.

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http://dx.doi.org/10.1093/nar/gky075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5861425PMC
March 2018

The O-antigen mediates differential survival of against communities of natural predators.

Microbiology 2016 Apr;162(4):610-621

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.

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http://dx.doi.org/10.1099/mic.0.000259DOI Listing
April 2016

Individual differences in boldness influence patterns of social interactions and the transmission of cuticular bacteria among group-mates.

Proc Biol Sci 2016 04;283(1829)

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, CA 93106, USA.

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http://dx.doi.org/10.1098/rspb.2016.0457DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4855390PMC
April 2016

A likelihood approach to classifying fluorescent events collected by multicolor flow cytometry.

J Microbiol Methods 2013 Jul 12;94(1):1-12. Epub 2013 Apr 12.

Department of Biological Sciences, University of Pittsburgh, USA.

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http://dx.doi.org/10.1016/j.mimet.2013.04.001DOI Listing
July 2013

Ecological adaptation in bacteria: speciation driven by codon selection.

Mol Biol Evol 2012 Dec 26;29(12):3669-83. Epub 2012 Jun 26.

Department of Biological Sciences, University of Pittsburgh, USA.

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http://dx.doi.org/10.1093/molbev/mss171DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3494267PMC
December 2012

Genetic manipulation of pathogenicity loci in non-Typhimurium Salmonella.

J Microbiol Methods 2012 Dec 3;91(3):477-82. Epub 2012 Oct 3.

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, United States.

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http://dx.doi.org/10.1016/j.mimet.2012.09.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3658464PMC
December 2012

Detecting laterally transferred genes.

Methods Mol Biol 2012 ;855:281-308

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.

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http://dx.doi.org/10.1007/978-1-61779-582-4_10DOI Listing
July 2012

Quantification of codon selection for comparative bacterial genomics.

BMC Genomics 2011 Jul 25;12:374. Epub 2011 Jul 25.

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.

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http://dx.doi.org/10.1186/1471-2164-12-374DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3162537PMC
July 2011

Rapid divergence of two classes of Haemophilus ducreyi.

J Bacteriol 2011 Jun 22;193(12):2941-7. Epub 2011 Apr 22.

Department of Biology, Allegheny College, Meadville, PA 16335, USA.

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http://dx.doi.org/10.1128/JB.01400-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3133207PMC
June 2011

Towards more robust methods of alien gene detection.

Nucleic Acids Res 2011 May 4;39(9):e56. Epub 2011 Feb 4.

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.

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http://dx.doi.org/10.1093/nar/gkr059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3089488PMC
May 2011

Phylogenetic incongruence arising from fragmented speciation in enteric bacteria.

Proc Natl Acad Sci U S A 2010 Jun 7;107(25):11453-8. Epub 2010 Jun 7.

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.

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http://dx.doi.org/10.1073/pnas.1001291107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2895130PMC
June 2010

Microbial evolution: enforcing cooperation by partial kin selection.

Curr Biol 2009 Nov;19(20):R943-5

Department of Biological Sciences, University of Pittsburgh, PA 15260, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S096098220901757
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http://dx.doi.org/10.1016/j.cub.2009.09.045DOI Listing
November 2009

Detection of genomic islands via segmental genome heterogeneity.

Nucleic Acids Res 2009 Sep 9;37(16):5255-66. Epub 2009 Jul 9.

Department of Computer Science, University of California San Diego, La Jolla, CA 92093, USA.

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http://dx.doi.org/10.1093/nar/gkp576DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2760805PMC
September 2009

The interplay of homologous recombination and horizontal gene transfer in bacterial speciation.

Methods Mol Biol 2009 ;532:29-53

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.

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http://dx.doi.org/10.1007/978-1-60327-853-9_3DOI Listing
May 2009

Detecting laterally transferred genes: use of entropic clustering methods and genome position.

Nucleic Acids Res 2007 25;35(14):4629-39. Epub 2007 Jun 25.

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.

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http://dx.doi.org/10.1093/nar/gkm204DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1950545PMC
September 2007

Temporal fragmentation of speciation in bacteria.

Science 2007 Aug;317(5841):1093-6

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.

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http://dx.doi.org/10.1126/science.1144876DOI Listing
August 2007

Differential Salmonella survival against communities of intestinal amoebae.

Microbiology 2007 Jun;153(Pt 6):1781-1789

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15235, USA.

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http://dx.doi.org/10.1099/mic.0.2006/003616-0DOI Listing
June 2007

Mutational bias suggests that replication termination occurs near the dif site, not at Ter sites.

Mol Microbiol 2007 Apr;64(1):42-56

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.

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http://dx.doi.org/10.1111/j.1365-2958.2007.05596.xDOI Listing
April 2007

The evolutionary origin of Xanthomonadales genomes and the nature of the horizontal gene transfer process.

Mol Biol Evol 2006 Nov 1;23(11):2049-57. Epub 2006 Aug 1.

Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universidad de Valencia, Valencia, Spain.

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http://dx.doi.org/10.1093/molbev/msl075DOI Listing
November 2006

Two transsulfurylation pathways in Klebsiella pneumoniae.

J Bacteriol 2006 Aug;188(16):5762-74

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.

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http://dx.doi.org/10.1128/JB.00347-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1540059PMC
August 2006

Selection for chromosome architecture in bacteria.

J Mol Evol 2006 May 11;62(5):615-29. Epub 2006 Apr 11.

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.

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http://link.springer.com/10.1007/s00239-005-0192-2
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http://dx.doi.org/10.1007/s00239-005-0192-2DOI Listing
May 2006

Common themes in the genome strategies of pathogens.

Curr Opin Genet Dev 2005 Dec 26;15(6):584-8. Epub 2005 Sep 26.

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S0959437X0500176
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http://dx.doi.org/10.1016/j.gde.2005.09.007DOI Listing
December 2005

Use of artificial genomes in assessing methods for atypical gene detection.

PLoS Comput Biol 2005 Nov 11;1(6):e56. Epub 2005 Nov 11.

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.

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http://dx.doi.org/10.1371/journal.pcbi.0010056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1282332PMC
November 2005

Why genomics is more than genomes.

Genome Biol 2004 16;5(12):357. Epub 2004 Nov 16.

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.

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http://dx.doi.org/10.1186/gb-2004-5-12-357DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC545792PMC
October 2005

Genome evolution in bacteria: order beneath chaos.

Curr Opin Microbiol 2005 Oct;8(5):572-8

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.

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http://dx.doi.org/10.1016/j.mib.2005.08.005DOI Listing
October 2005

Opinion: Re-evaluating prokaryotic species.

Nat Rev Microbiol 2005 Sep;3(9):733-9

Laboratory of Microbiology and the Bioinformatics and Evolutionary Genomics Research Group, Ghent University/VIB, Ghent, Belgium.

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http://www.nature.com/articles/nrmicro1236
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http://dx.doi.org/10.1038/nrmicro1236DOI Listing
September 2005

Horizontal and vertical gene transfer: the life history of pathogens.

Contrib Microbiol 2005 ;12:255-271

Pittsburgh Bacteriophage Institute and Department of Biological Sciences, University of Pittsburgh, Pittsburgh, Pa., USA.

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http://dx.doi.org/10.1159/000081699DOI Listing
December 2004

Protozoan predation, diversifying selection, and the evolution of antigenic diversity in Salmonella.

Proc Natl Acad Sci U S A 2004 Jul 9;101(29):10644-9. Epub 2004 Jul 9.

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15235, USA.

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http://dx.doi.org/10.1073/pnas.0404028101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC489988PMC
July 2004

Gene organization: selection, selfishness, and serendipity.

Annu Rev Microbiol 2003 ;57:419-40

Pittsburgh Bacteriophage Institute, Department of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.

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http://www.annualreviews.org/doi/10.1146/annurev.micro.57.03
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http://dx.doi.org/10.1146/annurev.micro.57.030502.090816DOI Listing
February 2004

Lateral gene transfer: when will adolescence end?

Mol Microbiol 2003 Nov;50(3):739-49

Pittsburgh Bacteriophage Institute and Department of Biological Sciences, 352 Crawford Hall, University of Pittsburgh, Pittsburgh, PA 15260, USA.

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http://dx.doi.org/10.1046/j.1365-2958.2003.03778.xDOI Listing
November 2003

Prokaryotic evolution in light of gene transfer.

Mol Biol Evol 2002 Dec;19(12):2226-38

Department of Molecular and Cell Biology, University of Connecticut, CT, USA.

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http://academic.oup.com/mbe/article/19/12/2226/997576
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http://dx.doi.org/10.1093/oxfordjournals.molbev.a004046DOI Listing
December 2002

Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches.

J Bacteriol 2002 Sep;184(17):4891-905

Department of Biological Sciences, Pittsburgh Bacteriophage Institute, University of Pittsburgh, Pittsburgh, PA 15260, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC135278PMC
http://dx.doi.org/10.1128/jb.184.17.4891-4905.2002DOI Listing
September 2002

Shared strategies in gene organization among prokaryotes and eukaryotes.

Cell 2002 Aug;110(4):407-13

Department of Biological Sciences, University of Pittsburgh, PA 15260, USA.

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http://dx.doi.org/10.1016/s0092-8674(02)00900-5DOI Listing
August 2002

Gene transfer in bacteria: speciation without species?

Theor Popul Biol 2002 Jun;61(4):449-60

Pittsburgh Bacteriophage Institute and Department of Biological Sciences, University of Pittsburgh, Pennsylvania 15260, USA.

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http://dx.doi.org/10.1006/tpbi.2002.1587DOI Listing
June 2002

Reconciling the many faces of lateral gene transfer.

Trends Microbiol 2002 Jan;10(1):1-4

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http://dx.doi.org/10.1016/s0966-842x(01)02282-xDOI Listing
January 2002