Publications by authors named "Jeffrey Dean"

61Publications

Machine Learning in Medicine. Reply.

N Engl J Med 2019 06;380(26):2589-2590

Harvard Medical School, Boston, MA

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http://dx.doi.org/10.1056/NEJMc1906060DOI Listing
June 2019

Machine Learning in Medicine.

N Engl J Med 2019 04;380(14):1347-1358

From Google, Mountain View, CA (A.R., J.D.); and the Department of Biomedical Informatics, Harvard Medical School, Boston (I.K.).

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http://dx.doi.org/10.1056/NEJMra1814259DOI Listing
April 2019

U.S. Pediatric Dentists' Perception of Molar Incisor Hypomineralization.

Pediatr Dent 2018 Jul;40(4):272-278

Department of Cariology, Operative Dentistry, and Dental Public Health, Indiana University, Indianapolis, Indiana, USA.

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July 2018

Exploring the loblolly pine (Pinus taeda L.) genome by BAC sequencing and Cot analysis.

Gene 2018 Jul 12;663:165-177. Epub 2018 Apr 12.

Institute for Genomics, Biocomputing & Biotechnology, Mississippi State University, Mississippi State, MS 39762, USA; Department of Plant & Soil Sciences, Mississippi State University, Mississippi State, MS 39762, USA. Electronic address:

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http://dx.doi.org/10.1016/j.gene.2018.04.024DOI Listing
July 2018

Proteomic analysis of the venom and venom sac of the woodwasp, Sirex noctilio - Towards understanding its biological impact.

J Proteomics 2016 09 5;146:195-206. Epub 2016 Jul 5.

Genecology Research Centre, University of The Sunshine Coast, Maroochydore DC 4558, Queensland, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2016.07.002DOI Listing
September 2016

Response to the Letter to the Editor.

Authors:
Jeffrey A Dean

Pediatr Dent 2016 ;38(3):190

Office of the Chancellor Indiana University-Purdue University Indianapolis, USA; Indiana University School of Dentistry Riley Hospital for Children at IU Health, Indianapolis, Indiana, USA.

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October 2017

Eleventh-century shift in timber procurement areas for the great houses of Chaco Canyon.

Proc Natl Acad Sci U S A 2016 Feb 7;113(5):1186-90. Epub 2015 Dec 7.

Laboratory of Tree-Ring Research, University of Arizona, Tucson, AZ 85721;

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http://dx.doi.org/10.1073/pnas.1514272112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4747737PMC
February 2016

Noctilisin, a Venom Glycopeptide of Sirex noctilio (Hymenoptera: Siricidae), Causes Needle Wilt and Defense Gene Responses in Pines.

J Econ Entomol 2014 10;107(5):1931-45

From the Warnell School of Forestry and Natural Resources, University of Georgia, Athens, GA 30602. The Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602.

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http://dx.doi.org/10.1603/EC14151DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5746048PMC
October 2014

Authors' response.

J Am Dent Assoc 2015 Jul;146(7):496

Ralph E. McDonald, Professor of Pediatric Dentistry and Professor of Orthodontics, School of Dentistry Indiana University and Riley Hospital for Children, Indianapolis, IN.

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http://dx.doi.org/10.1016/j.adaj.2015.05.007DOI Listing
July 2015

The success of stainless steel crowns placed with the Hall technique: a retrospective study.

J Am Dent Assoc 2014 Dec;145(12):1248-53

Dr. Dean is the Ralph E. McDonald Professor of Pediatric Dentistry and a professor of orthodontics, School of Dentistry, Indiana University, Indianapolis, and Riley Hospital for Children, Indianapolis. Address correspondence to Dr. Dean at Riley Hospital for Children, 705 Riley Hospital Drive, Room 4205, Indianapolis, Ind. 46202-5109, e-mail

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http://dx.doi.org/10.14219/jada.2014.89DOI Listing
December 2014

African clawed toads (Xenopus laevis) sense the distance of lateral line stimuli.

J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2014 Jul 30;200(7):657-67. Epub 2014 Apr 30.

Department of Biological, Geological, and Environmental Sciences, Cleveland State University, BGES/SI 219, 2121 Euclid Ave, Cleveland, OH, 44115, USA,

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http://dx.doi.org/10.1007/s00359-014-0911-5DOI Listing
July 2014

Craniofacial approaches and reconstruction in skull base surgery: techniques for the oral and maxillofacial surgeon.

J Oral Maxillofac Surg 2013 Dec;71(12):2137-50

Assistant Professor, Department of Oral and Maxillofacial Surgery, University of Texas School of Dentistry, Houston, TX. Electronic address:

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http://dx.doi.org/10.1016/j.joms.2013.08.003DOI Listing
December 2013

What is in a name? Oral and maxillofacial surgeon versus oral surgeon.

J Oral Maxillofac Surg 2014 Jan 17;72(1):8-18. Epub 2013 Jul 17.

Professor and Chairman, Department of Oral and Maxillofacial Surgery, Loma Linda University, Loma Linda, CA.

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http://dx.doi.org/10.1016/j.joms.2013.04.018DOI Listing
January 2014

Current trends in pulp therapy: a survey analyzing pulpotomy techniques taught in pediatric dental residency programs.

J Dent Child (Chic) 2013 Jan-Apr;80(1):31-5

Department of Pediatric Dentistry, School of Dentistry, Indiana University, Indianapolis, India.

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September 2013

A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation.

BMC Genomics 2013 Feb 28;14:137. Epub 2013 Feb 28.

Department of Forest Ecosystems and Society, Oregon State University, Corvallis, Oregon 97331, USA.

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http://dx.doi.org/10.1186/1471-2164-14-137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3673906PMC
February 2013

Biomarker genes highlight intraspecific and interspecific variations in the responses of Pinus taeda L. and Pinus radiata D. Don to Sirex noctilio F. acid gland secretions.

Tree Physiol 2012 Oct 5;32(10):1302-12. Epub 2012 Oct 5.

Warnell School of Forestry and Natural Resources, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1093/treephys/tps091DOI Listing
October 2012

Towards decoding the conifer giga-genome.

Plant Mol Biol 2012 Dec 9;80(6):555-69. Epub 2012 Sep 9.

Center for Forest Research, Institute for Integrative and Systems Biology, Université Laval, Québec, Québec G1V 0A6, Canada.

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http://dx.doi.org/10.1007/s11103-012-9961-7DOI Listing
December 2012

The phenylalanine ammonia lyase (PAL) gene family shows a gymnosperm-specific lineage.

BMC Genomics 2012 Jun 11;13 Suppl 3:S1. Epub 2012 Jun 11.

Institute of Bioinformatics, The University of Georgia, Athens, GA 30602-7229, USA.

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http://dx.doi.org/10.1186/1471-2164-13-S3-S1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394424PMC
June 2012

Cervicofacial necrotizing fasciitis and steroids: case report and literature review.

J Oral Maxillofac Surg 2012 Feb 12;70(2):340-4. Epub 2011 Jun 12.

Department of Oral and Maxillofacial Surgery, Loma Linda University Medical Center, Loma Linda, CA 92354, USA.

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http://dx.doi.org/10.1016/j.joms.2011.02.021DOI Listing
February 2012

Complications in bone grafting.

Oral Maxillofac Surg Clin North Am 2011 Aug 31;23(3):433-42. Epub 2011 May 31.

Department of Oral and Maxillofacial Surgery, Loma Linda University, 11092 Anderson Street, Loma Linda, CA 92350, USA.

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http://dx.doi.org/10.1016/j.coms.2011.04.004DOI Listing
August 2011

Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.).

BMC Genomics 2011 May 24;12:264. Epub 2011 May 24.

Warnell School of Forestry and Natural Resources, The University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1186/1471-2164-12-264DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3123330PMC
May 2011

Multifocal oral Langerhans cell histiocytosis.

J Oral Maxillofac Surg 2011 Oct 5;69(10):2585-91. Epub 2011 Apr 5.

Department of Oral and Maxillofacial Surgery, Loma Linda University School of Dentistry, Loma Linda, CA, USA.

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http://dx.doi.org/10.1016/j.joms.2011.01.008DOI Listing
October 2011

Partnered disaster preparedness: lessons learned from international events.

J Am Acad Orthop Surg 2011 ;19 Suppl 1:S44-8

Warren Alpert Medical School, Brown University, and Orthopaedic Trauma Service, Rhode Island Hospital, Providence, RI, USA.

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http://dx.doi.org/10.5435/00124635-201102001-00010DOI Listing
May 2011

Differential responses of the promoters from nearly identical paralogs of loblolly pine (Pinus taeda L.) ACC oxidase to biotic and abiotic stresses in transgenic Arabidopsis thaliana.

Planta 2010 Sep 15;232(4):873-86. Epub 2010 Jul 15.

Warnell School of Forestry and Natural Resources, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1007/s00425-010-1224-8DOI Listing
September 2010

An improved method of RNA isolation from loblolly pine (P. taeda L.) and other conifer species.

J Vis Exp 2010 Feb 22(36). Epub 2010 Feb 22.

Warnell School of Forestry and Natural Resources, University of Georgia, USA.

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http://dx.doi.org/10.3791/1751DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3152223PMC
February 2010

Effect on behavior of dental treatment rendered under conscious sedation and general anesthesia in pediatric patients.

Pediatr Dent 2009 Nov-Dec;31(7):492-7

James Whitcomb Riley Hospital for Children, Indiana University School of Dentistry-Pediatric Dentistry, Indianapolis, IN, USA.

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March 2010

Processing the loblolly pine PtGen2 cDNA microarray.

J Vis Exp 2009 Mar 20(25). Epub 2009 Mar 20.

Warnell School of Forestry and Natural Resources, University of Georgia, USA.

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http://dx.doi.org/10.3791/1182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2789761PMC
March 2009

Carbohydrate-related genes and cell wall biosynthesis in vascular tissues of loblolly pine (Pinus taeda).

Tree Physiol 2008 Jul;28(7):1099-110

Warnell School of Forestry and Natural Resources, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1093/treephys/28.7.1099DOI Listing
July 2008

Dental caries experience and association to risk indicators of remote rural populations.

Int J Paediatr Dent 2008 Jul 18;18(4):275-83. Epub 2008 Feb 18.

Private Practice, Newburgh, Indianapolis, IA 47629, USA.

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http://dx.doi.org/10.1111/j.1365-263X.2007.00889.xDOI Listing
July 2008

Histological evaluation of enamel matrix derivative as a pulpotomy agent in primary teeth.

Pediatr Dent 2007 Nov-Dec;29(6):475-9

Ministry of Health, Irbid, Jordan.

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February 2008

An evaluation of DNA yield, DNA quality and bite registration from a dental impression wafer.

J Am Dent Assoc 2007 Sep;138(9):1234-40; quiz 1267

Department of Pediatric Dentistry, Indiana University School of Dentistry, 1121 W. Michigan Street, Indianapolis, IN 46202, USA.

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http://dx.doi.org/10.14219/jada.archive.2007.0349DOI Listing
September 2007

WebTraceMiner: a web service for processing and mining EST sequence trace files.

Nucleic Acids Res 2007 Jul 8;35(Web Server issue):W137-42. Epub 2007 May 8.

Department of Botany, Miami University, Oxford, Ohio 45056, USA.

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http://dx.doi.org/10.1093/nar/gkm299DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933163PMC
July 2007

Prey-capture in the African clawed toad (Xenopus laevis): comparison of turning to visual and lateral line stimuli.

J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2006 Oct 15;192(10):1021-36. Epub 2006 Jun 15.

Department of Biological, Geological, and Environmental Sciences, Cleveland State University, BGES/SI 219, 2121 Euclid Avenue, Cleveland, OH 44115, USA.

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http://dx.doi.org/10.1007/s00359-006-0137-2DOI Listing
October 2006

Gene expression changes in Arabidopsis thaliana seedling roots exposed to the munition hexahydro-1,3,5-trinitro-1,3,5-triazine.

Environ Sci Technol 2005 Aug;39(16):6313-20

National Exposure Research Laboratory, Ecosystems Research Division, U.S. Environmental Protection Agency, Athens, Georgia 30605, USA.

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http://dx.doi.org/10.1021/es050385rDOI Listing
August 2005

Public assistance orthodontic treatment needs: a report from the state of Indiana.

J Public Health Dent 2005 ;65(3):133-7

Department of Oral Facial Development, Riley Hospital for Children, Suite 4205, 702 Barnhill Dr, Indianapolis, IN 46202-5200, USA.

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http://dx.doi.org/10.1111/j.1752-7325.2005.tb02802.xDOI Listing
October 2005

The role of general anesthesia in pediatric dentistry.

Hawaii Dent J 2002 Jan-Feb;33(1):16-7

Pediatric Dentistry, Indiana University School of Dentistry, USA.

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July 2005

Gene structure and molecular analysis of the laccase-like multicopper oxidase (LMCO) gene family in Arabidopsis thaliana.

Planta 2005 Jul 7;221(5):619-36. Epub 2005 Jun 7.

Daniel B. Warnell School of Forest Resources, University of Georgia, Athens, GA 30602, USA.

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http://link.springer.com/10.1007/s00425-004-1472-6
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http://dx.doi.org/10.1007/s00425-004-1472-6DOI Listing
July 2005

Comparing infant oral glucose clearance with and without a water rinse.

J Indiana Dent Assoc 2003-2004 Winter;82(4):25-9

Department of Oral Facial Development, Riley Hospital for Children, USA.

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November 2004

Tagging all genes.

Authors:
Jeffrey F D Dean

Nat Biotechnol 2004 Aug;22(8):961-2

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http://dx.doi.org/10.1038/nbt0804-961DOI Listing
August 2004

Dental fracture fragment attachment: fracture model and luting agent comparisons.

J Indiana Dent Assoc 2004 ;83(1):7-12

Department of Oral Facial Development, Indiana University School of Dentistry, Riley Hospital for Children, Indianapolis, USA.

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August 2004

Ferroxidase activity in a laccase-like multicopper oxidase from Liriodendron tulipifera.

Plant Physiol Biochem 2004 Jan;42(1):27-33

Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1016/j.plaphy.2003.10.011DOI Listing
January 2004

The evolution of social behavior in the prehistoric American southwest.

Artif Life 2003 ;9(4):435-44

Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501, USA.

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http://dx.doi.org/10.1162/106454603322694861DOI Listing
March 2004

SAGE analysis of transcriptome responses in Arabidopsis roots exposed to 2,4,6-trinitrotoluene.

Plant Physiol 2003 Nov 9;133(3):1397-406. Epub 2003 Oct 9.

Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602, USA.

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http://dx.doi.org/10.1104/pp.103.028019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC281634PMC
November 2003

Fluoride varnish concentration gradient and its effect on enamel demineralization.

Pediatr Dent 2003 Mar-Apr;25(2):119-26

Riley Hospital for Children, Indianapolis, Ind, USA.

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July 2003

Walknet-a biologically inspired network to control six-legged walking.

Neural Netw 1998 Oct;11(7-8):1435-1447

Faculty of Biology, University of Bielefeld, Postfach 100 131, D-33501, Bielefeld, Germany

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http://dx.doi.org/10.1016/s0893-6080(98)00067-7DOI Listing
October 1998

SAGE profiling and demonstration of differential gene expression along the axial developmental gradient of lignifying xylem in loblolly pine (Pinus taeda).

Tree Physiol 2002 Apr;22(5):301-10

Department of Biochemistry and Molecular Biology, Daniel B. Warnell School of Forest Resources, University of Georgia, Athens, GA 30602-2152, USA.

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http://dx.doi.org/10.1093/treephys/22.5.301DOI Listing
April 2002

The impact of early palatal obturation on consonant development in babies with unrepaired cleft palate.

Cleft Palate Craniofac J 2002 Mar;39(2):157-63

Division of Communication Disorders, University of Wyoming, Laramie, Wyoming, USA.

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http://dx.doi.org/10.1597/1545-1569_2002_039_0157_tioepo_2.0.co_2DOI Listing
March 2002

Abscisic acid and zygotic embryogenesis in Pinus taeda.

Tree Physiol 1995 Jul-Aug;15(7_8):485-490

Kimberly-Clark, Technical Papers, 1400 Holcomb Bridge Road, Roswell, GA 30076, USA.

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http://dx.doi.org/10.1093/treephys/15.7-8.485DOI Listing
July 1995