Publications by authors named "Jeffrey Bilmes"

12 Publications

  • Page 1 of 1

A pitfall for machine learning methods aiming to predict across cell types.

Genome Biol 2020 Nov 19;21(1):282. Epub 2020 Nov 19.

Paul G. Allen School of Computer Science & Engineering, University of Washington, Seattle, USA.

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November 2020

Prioritizing transcriptomic and epigenomic experiments by using an optimization strategy that leverages imputed data.

Bioinformatics 2020 Sep 23. Epub 2020 Sep 23.

Department of Genome Sciences, University of Washington, Seattle, United States.

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September 2020

Completing the ENCODE3 compendium yields accurate imputations across a variety of assays and human biosamples.

Genome Biol 2020 03 30;21(1):82. Epub 2020 Mar 30.

Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, USA.

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March 2020

Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome.

Genome Biol 2020 03 30;21(1):81. Epub 2020 Mar 30.

Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, USA.

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March 2020

Submodular Generalized Matching for Peptide Identification in Tandem Mass Spectrometry.

IEEE/ACM Trans Comput Biol Bioinform 2019 Jul-Aug;16(4):1168-1181. Epub 2018 Apr 2.

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February 2020

Choosing non-redundant representative subsets of protein sequence data sets using submodular optimization.

Proteins 2018 04 1;86(4):454-466. Epub 2018 Feb 1.

Department of Genome Sciences, University of Washington, Seattle, Washington.

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April 2018

Choosing panels of genomics assays using submodular optimization.

Genome Biol 2016 11 15;17(1):229. Epub 2016 Nov 15.

Department of Genome Sciences, University of Washington, Seattle, WA, USA.

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November 2016

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression.

Genome Res 2015 Apr 12;25(4):544-57. Epub 2015 Feb 12.

Department of Computer Science and Engineering, University of Washington, Seattle, Washington 98195, USA Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.

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April 2015