Publications by authors named "Jeffrey A Ranish"

44Publications

Absolute quantification of transcription factors in human erythropoiesis using selected reaction monitoring mass spectrometry.

Authors:
Mark A Gillespie Carmen G Palii Daniel Sanchez-Taltavull Theodore J Perkins Marjorie Brand Jeffrey A Ranish

STAR Protoc 2020 Dec 13;1(3):100216. Epub 2020 Dec 13.

Institute for Systems Biology, Seattle, WA 98109, USA.

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December 2020

A Structural Model of the Endogenous Human BAF Complex Informs Disease Mechanisms.

Authors:
Nazar Mashtalir Hiroshi Suzuki Daniel P Farrell Akshay Sankar Jie Luo Martin Filipovski Andrew R D'Avino Roodolph St Pierre Alfredo M Valencia Takashi Onikubo Robert G Roeder Yan Han Yuan He Jeffrey A Ranish Frank DiMaio Thomas Walz Cigall Kadoch

Cell 2020 Oct 13;183(3):802-817.e24. Epub 2020 Oct 13.

Department of Pediatric Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA, USA; Broad Institute of MIT and Harvard, Cambridge, MA, USA. Electronic address:

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October 2020

Absolute Quantification of Transcription Factors Reveals Principles of Gene Regulation in Erythropoiesis.

Authors:
Mark A Gillespie Carmen G Palii Daniel Sanchez-Taltavull Paul Shannon William J R Longabaugh Damien J Downes Karthi Sivaraman Herbert M Espinoza Jim R Hughes Nathan D Price Theodore J Perkins Jeffrey A Ranish Marjorie Brand

Mol Cell 2020 06 23;78(5):960-974.e11. Epub 2020 Apr 23.

Sprott Center for Stem Cell Research, Ottawa Hospital Research Institute, Ottawa, ON K1H8L6, Canada; Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, ON K1H8L6, Canada. Electronic address:

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June 2020

Loss of the neural-specific BAF subunit ACTL6B relieves repression of early response genes and causes recessive autism.

Authors:
Wendy Wenderski Lu Wang Andrey Krokhotin Jessica J Walsh Hongjie Li Hirotaka Shoji Shereen Ghosh Renee D George Erik L Miller Laura Elias Mark A Gillespie Esther Y Son Brett T Staahl Seung Tae Baek Valentina Stanley Cynthia Moncada Zohar Shipony Sara B Linker Maria C N Marchetto Fred H Gage Dillon Chen Tipu Sultan Maha S Zaki Jeffrey A Ranish Tsuyoshi Miyakawa Liqun Luo Robert C Malenka Gerald R Crabtree Joseph G Gleeson

Proc Natl Acad Sci U S A 2020 05 20;117(18):10055-10066. Epub 2020 Apr 20.

Department of Neuroscience, University of California San Diego, La Jolla, CA 92037;

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May 2020

Single-Cell Proteomics Reveal that Quantitative Changes in Co-expressed Lineage-Specific Transcription Factors Determine Cell Fate.

Authors:
Carmen G Palii Qian Cheng Mark A Gillespie Paul Shannon Michalina Mazurczyk Giorgio Napolitani Nathan D Price Jeffrey A Ranish Edward Morrissey Douglas R Higgs Marjorie Brand

Cell Stem Cell 2019 05 14;24(5):812-820.e5. Epub 2019 Mar 14.

Sprott Center for Stem Cell Research, Ottawa Hospital Research Institute, Ottawa, ON K1H8L6, Canada; Department of Medicine, Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, ON K1H8L6, Canada. Electronic address:

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May 2019

Modular Organization and Assembly of SWI/SNF Family Chromatin Remodeling Complexes.

Authors:
Nazar Mashtalir Andrew R D'Avino Brittany C Michel Jie Luo Joshua Pan Jordan E Otto Hayley J Zullow Zachary M McKenzie Rachel L Kubiak Roodolph St Pierre Alfredo M Valencia Steven J Poynter Seth H Cassel Jeffrey A Ranish Cigall Kadoch

Cell 2018 11 18;175(5):1272-1288.e20. Epub 2018 Oct 18.

Department of Pediatric Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA 02215, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA. Electronic address:

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November 2018

SMARCB1 is required for widespread BAF complex-mediated activation of enhancers and bivalent promoters.

Authors:
Robert T Nakayama John L Pulice Alfredo M Valencia Matthew J McBride Zachary M McKenzie Mark A Gillespie Wai Lim Ku Mingxiang Teng Kairong Cui Robert T Williams Seth H Cassel He Qing Christian J Widmer George D Demetri Rafael A Irizarry Keji Zhao Jeffrey A Ranish Cigall Kadoch

Nat Genet 2017 Nov 25;49(11):1613-1623. Epub 2017 Sep 25.

Department of Pediatric Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, Massachusetts, USA.

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November 2017

Mechanism for microbial population collapse in a fluctuating resource environment.

Authors:
Serdar Turkarslan Arjun V Raman Anne W Thompson Christina E Arens Mark A Gillespie Frederick von Netzer Kristina L Hillesland Sergey Stolyar Adrian López García de Lomana David J Reiss Drew Gorman-Lewis Grant M Zane Jeffrey A Ranish Judy D Wall David A Stahl Nitin S Baliga

Mol Syst Biol 2017 03 20;13(3):919. Epub 2017 Mar 20.

Institute for Systems Biology, Seattle, WA, USA

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March 2017

Corrigendum: Quantitative proteomic analysis of purified yeast kinetochores identifies a PP1 regulatory subunit.

Authors:
Bungo Akiyoshi Christian R Nelson Jeffrey A Ranish Sue Biggins

Genes Dev 2016 10;30(20):2339

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October 2016

An LXR-NCOA5 gene regulatory complex directs inflammatory crosstalk-dependent repression of macrophage cholesterol efflux.

Authors:
Mark A Gillespie Elizabeth S Gold Stephen A Ramsey Irina Podolsky Alan Aderem Jeffrey A Ranish

EMBO J 2015 May 9;34(9):1244-58. Epub 2015 Mar 9.

Institute for Systems Biology, Seattle, WA, USA

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May 2015

Glycocapture-assisted global quantitative proteomics (gagQP) reveals multiorgan responses in serum toxicoproteome.

Authors:
Bingyun Sun Angelita G Utleg Zhiyuan Hu Shizhen Qin Andrew Keller Cynthia Lorang Li Gray Amy Brightman Denis Lee Vinita M Alexander Jeffrey A Ranish Robert L Moritz Leroy Hood

J Proteome Res 2013 May 11;12(5):2034-44. Epub 2013 Apr 11.

Institute for Systems Biology , 401 N. Terry Ave., Seattle, Washington 98109, USA.

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May 2013

The Mub1/Ubr2 ubiquitin ligase complex regulates the conserved Dsn1 kinetochore protein.

Authors:
Bungo Akiyoshi Christian R Nelson Nicole Duggan Steven Ceto Jeffrey A Ranish Sue Biggins

PLoS Genet 2013 7;9(2):e1003216. Epub 2013 Feb 7.

Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.

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June 2013

Phosphoregulation of Spc105 by Mps1 and PP1 regulates Bub1 localization to kinetochores.

Authors:
Nitobe London Steven Ceto Jeffrey A Ranish Sue Biggins

Curr Biol 2012 May 19;22(10):900-6. Epub 2012 Apr 19.

Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.

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May 2012

Multiple sequence-specific DNA-binding proteins mediate estrogen receptor signaling through a tethering pathway.

Authors:
Nina Heldring Gary D Isaacs Adam G Diehl Miao Sun Edwin Cheung Jeffrey A Ranish W Lee Kraus

Mol Endocrinol 2011 Apr 17;25(4):564-74. Epub 2011 Feb 17.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.

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April 2011

Tension directly stabilizes reconstituted kinetochore-microtubule attachments.

Authors:
Bungo Akiyoshi Krishna K Sarangapani Andrew F Powers Christian R Nelson Steve L Reichow Hugo Arellano-Santoyo Tamir Gonen Jeffrey A Ranish Charles L Asbury Sue Biggins

Nature 2010 Nov;468(7323):576-9

Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.

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November 2010

KLF3 regulates muscle-specific gene expression and synergizes with serum response factor on KLF binding sites.

Authors:
Charis L Himeda Jeffrey A Ranish Richard C M Pearson Merlin Crossley Stephen D Hauschka

Mol Cell Biol 2010 Jul 19;30(14):3430-43. Epub 2010 Apr 19.

Department of Biochemistry, Box 357350, University of Washington, Seattle, WA 98195, USA.

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July 2010

p38-{gamma}-dependent gene silencing restricts entry into the myogenic differentiation program.

Authors:
Mark A Gillespie Fabien Le Grand Anthony Scimè Shihuan Kuang Julia von Maltzahn Vanessa Seale Ana Cuenda Jeffrey A Ranish Michael A Rudnicki

J Cell Biol 2009 Dec 21;187(7):991-1005. Epub 2009 Dec 21.

The Sprott Centre for Stem Cell Research, Ottawa Health Research Institute, Ontario, Canada.

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December 2009

Quantitative proteomic analysis of purified yeast kinetochores identifies a PP1 regulatory subunit.

Authors:
Bungo Akiyoshi Christian R Nelson Jeffrey A Ranish Sue Biggins

Genes Dev 2009 Dec;23(24):2887-99

Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.

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December 2009

Dual role for the methyltransferase G9a in the maintenance of beta-globin gene transcription in adult erythroid cells.

Authors:
Chandra-Prakash Chaturvedi Alison M Hosey Carmen Palii Carolina Perez-Iratxeta Yoshihiro Nakatani Jeffrey A Ranish F Jeffrey Dilworth Marjorie Brand

Proc Natl Acad Sci U S A 2009 Oct 12;106(43):18303-8. Epub 2009 Oct 12.

The Sprott Center for Stem Cell Research, Regenerative Medicine Program, Ottawa Hospital Research Institute, Ottawa, ON Canada.

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October 2009

Analysis of Ipl1-mediated phosphorylation of the Ndc80 kinetochore protein in Saccharomyces cerevisiae.

Authors:
Bungo Akiyoshi Christian R Nelson Jeffrey A Ranish Sue Biggins

Genetics 2009 Dec 12;183(4):1591-5. Epub 2009 Oct 12.

Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.

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December 2009