Jeffrey A Jeddeloh

Jeffrey A Jeddeloh

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Jeffrey A Jeddeloh

Jeffrey A Jeddeloh

Publications by authors named "Jeffrey A Jeddeloh"

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38Publications

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Targeted Bisulfite Sequencing Using the SeqCap Epi Enrichment System.

Methods Mol Biol 2018 ;1708:383-405

Roche Sequencing Solutions, 500 S. Rosa Road, Madison, WI, 53719, USA.

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http://dx.doi.org/10.1007/978-1-4939-7481-8_20DOI Listing
July 2018

The Arabidopsis thaliana mobilome and its impact at the species level.

Elife 2016 06 3;5. Epub 2016 Jun 3.

Institut de Biologie de l'Ecole Normale Supérieure, Centre National de la Recherche Scientifique, Institut National de la Santé et de la Recherche Médicale, Ecole Normale Supérieure, Paris, France.

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http://dx.doi.org/10.7554/eLife.15716DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4917339PMC
June 2016

Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum.

Plant J 2014 Sep 11;79(6):993-1008. Epub 2014 Aug 11.

Department of Energy Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 48824, USA; Department of Plant Biology, Michigan State University, East Lansing, MI, 48824, USA.

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http://dx.doi.org/10.1111/tpj.12601DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4309430PMC
September 2014

Changes in genome content generated via segregation of non-allelic homologs.

Plant J 2012 Nov 30;72(3):390-9. Epub 2012 Aug 30.

Department of Agronomy, 2035 Roy J. Carver Co-Lab, Iowa State University, Ames, IA 50011, USA.

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http://dx.doi.org/10.1111/j.1365-313X.2012.05087.xDOI Listing
November 2012

Structural variants in the soybean genome localize to clusters of biotic stress-response genes.

Plant Physiol 2012 Aug 13;159(4):1295-308. Epub 2012 Jun 13.

Department of Horticulture and Crop Science, Ohio State University, Columbus, Ohio 43210, USA.

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http://dx.doi.org/10.1104/pp.112.194605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3425179PMC
August 2012

Targeted capture of homoeologous coding and noncoding sequence in polyploid cotton.

G3 (Bethesda) 2012 Aug 1;2(8):921-30. Epub 2012 Aug 1.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.

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http://dx.doi.org/10.1534/g3.112.003392DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3411248PMC
August 2012

Targeted RNA sequencing reveals the deep complexity of the human transcriptome.

Nat Biotechnol 2011 Nov 13;30(1):99-104. Epub 2011 Nov 13.

Institute for Molecular Bioscience, University of Queensland, Brisbane, Australia.

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http://dx.doi.org/10.1038/nbt.2024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3710462PMC
November 2011

Fluorescence in situ hybridization with high-complexity repeat-free oligonucleotide probes generated by massively parallel synthesis.

Chromosome Res 2011 Oct 18;19(7):901-9. Epub 2011 Oct 18.

MRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Crewe Road, Edinburgh, EH4 2XU, UK.

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http://link.springer.com/10.1007/s10577-011-9245-0
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http://dx.doi.org/10.1007/s10577-011-9245-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3210351PMC
October 2011

Somatic retrotransposition alters the genetic landscape of the human brain.

Nature 2011 Oct 30;479(7374):534-7. Epub 2011 Oct 30.

Division of Genetics and Genomics, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Edinburgh EH25 9RG, UK.

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http://dx.doi.org/10.1038/nature10531DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3224101PMC
October 2011

Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean.

Plant Physiol 2011 May 14;156(1):240-53. Epub 2011 Feb 14.

Plant Science Research Unit, United States Department of Agriculture-Agricultural Research Service, St. Paul, Minnesota 55108, USA.

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http://dx.doi.org/10.1104/pp.110.170811DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091049PMC
May 2011

The B73 maize genome: complexity, diversity, and dynamics.

Authors:
Patrick S Schnable Doreen Ware Robert S Fulton Joshua C Stein Fusheng Wei Shiran Pasternak Chengzhi Liang Jianwei Zhang Lucinda Fulton Tina A Graves Patrick Minx Amy Denise Reily Laura Courtney Scott S Kruchowski Chad Tomlinson Cindy Strong Kim Delehaunty Catrina Fronick Bill Courtney Susan M Rock Eddie Belter Feiyu Du Kyung Kim Rachel M Abbott Marc Cotton Andy Levy Pamela Marchetto Kerri Ochoa Stephanie M Jackson Barbara Gillam Weizu Chen Le Yan Jamey Higginbotham Marco Cardenas Jason Waligorski Elizabeth Applebaum Lindsey Phelps Jason Falcone Krishna Kanchi Thynn Thane Adam Scimone Nay Thane Jessica Henke Tom Wang Jessica Ruppert Neha Shah Kelsi Rotter Jennifer Hodges Elizabeth Ingenthron Matt Cordes Sara Kohlberg Jennifer Sgro Brandon Delgado Kelly Mead Asif Chinwalla Shawn Leonard Kevin Crouse Kristi Collura Dave Kudrna Jennifer Currie Ruifeng He Angelina Angelova Shanmugam Rajasekar Teri Mueller Rene Lomeli Gabriel Scara Ara Ko Krista Delaney Marina Wissotski Georgina Lopez David Campos Michele Braidotti Elizabeth Ashley Wolfgang Golser HyeRan Kim Seunghee Lee Jinke Lin Zeljko Dujmic Woojin Kim Jayson Talag Andrea Zuccolo Chuanzhu Fan Aswathy Sebastian Melissa Kramer Lori Spiegel Lidia Nascimento Theresa Zutavern Beth Miller Claude Ambroise Stephanie Muller Will Spooner Apurva Narechania Liya Ren Sharon Wei Sunita Kumari Ben Faga Michael J Levy Linda McMahan Peter Van Buren Matthew W Vaughn Kai Ying Cheng-Ting Yeh Scott J Emrich Yi Jia Ananth Kalyanaraman An-Ping Hsia W Brad Barbazuk Regina S Baucom Thomas P Brutnell Nicholas C Carpita Cristian Chaparro Jer-Ming Chia Jean-Marc Deragon James C Estill Yan Fu Jeffrey A Jeddeloh Yujun Han Hyeran Lee Pinghua Li Damon R Lisch Sanzhen Liu Zhijie Liu Dawn Holligan Nagel Maureen C McCann Phillip SanMiguel Alan M Myers Dan Nettleton John Nguyen Bryan W Penning Lalit Ponnala Kevin L Schneider David C Schwartz Anupma Sharma Carol Soderlund Nathan M Springer Qi Sun Hao Wang Michael Waterman Richard Westerman Thomas K Wolfgruber Lixing Yang Yeisoo Yu Lifang Zhang Shiguo Zhou Qihui Zhu Jeffrey L Bennetzen R Kelly Dawe Jiming Jiang Ning Jiang Gernot G Presting Susan R Wessler Srinivas Aluru Robert A Martienssen Sandra W Clifton W Richard McCombie Rod A Wing Richard K Wilson

Science 2009 Nov;326(5956):1112-5

Center for Plant Genomics, Iowa State University, Ames, IA 50011, USA.

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http://www.dawelab.org/wp-content/uploads/2011/03/schnable-2
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http://www.sciencemag.org/cgi/doi/10.1126/science.1178534
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http://dx.doi.org/10.1126/science.1178534DOI Listing
November 2009

Reduced-representation methylation mapping.

Genome Biol 2008 1;9(8):231. Epub 2008 Sep 1.

Roche NimbleGen Inc, Research and Development, 500 S. Rosa Rd, Madison, WI 53719, USA.

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http://dx.doi.org/10.1186/gb-2008-9-8-231DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2575507PMC
December 2008

Comprehensive high-throughput arrays for relative methylation (CHARM).

Genome Res 2008 May 3;18(5):780-90. Epub 2008 Mar 3.

Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205, USA.

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http://dx.doi.org/10.1101/gr.7301508DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2336799PMC
May 2008

Role of quorum sensing in the pathogenicity of Burkholderia pseudomallei.

J Med Microbiol 2004 Nov;53(Pt 11):1053-64

Bacteriology Division, United States Army Medical Research Institute of Infectious Diseases, 1425 Porter Street, Fort Detrick, MD 21702-5011, USA.

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http://jmm.microbiologyresearch.org/content/journal/jmm/10.1
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http://dx.doi.org/10.1099/jmm.0.45661-0DOI Listing
November 2004

Quorum sensing: a transcriptional regulatory system involved in the pathogenicity of Burkholderia mallei.

Infect Immun 2004 Nov;72(11):6589-96

Bacteriology Division, United States Army Medical Research Institute of Infectious Diseases, 1425 Porter St., Fort Detrick, MD 21702, USA.

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http://iai.asm.org/cgi/doi/10.1128/IAI.72.11.6589-6596.2004
Publisher Site
http://dx.doi.org/10.1128/IAI.72.11.6589-6596.2004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC523006PMC
November 2004

Mutational analysis and biochemical characterization of the Burkholderia thailandensis DW503 quorum-sensing network.

J Bacteriol 2004 Jul;186(13):4350-60

Bacteriology Division, United States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Maryland 21702-5011, USA.

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http://jb.asm.org/cgi/doi/10.1128/JB.186.13.4350-4360.2004
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http://dx.doi.org/10.1128/JB.186.13.4350-4360.2004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC421622PMC
July 2004

Arabidopsis MET1 cytosine methyltransferase mutants.

Genetics 2003 Mar;163(3):1109-22

Department of Biology, Washington University, St Louis, Missouri 63130, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462485PMC
March 2003

Burkholderia thailandensis E125 harbors a temperate bacteriophage specific for Burkholderia mallei.

J Bacteriol 2002 Jul;184(14):4003-17

Department of Microbiology and Infectious Diseases, University of Calgary Health Sciences Centre, Alberta T2N 4N1, Canada.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC135171PMC
http://dx.doi.org/10.1128/jb.184.14.4003-4017.2002DOI Listing
July 2002