Jeffrey A Bailey

Jeffrey A Bailey

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Jeffrey A Bailey

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The changing landscape of Plasmodium falciparum drug resistance in the Democratic Republic of Congo.

BMC Infect Dis 2019 Oct 22;19(1):872. Epub 2019 Oct 22.

Medical Research Council Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, Imperial College London, London, UK.

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http://dx.doi.org/10.1186/s12879-019-4523-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6805465PMC
October 2019

Genetic Variation Within the Gene Modulates Susceptibility to Type 1 Diabetes in HLA-DR3 Homozygotes.

Diabetes 2019 Jul 8;68(7):1523-1527. Epub 2019 Apr 8.

Division of Endocrinology, Department of Medicine, University of Massachusetts Medical School, Worcester, MA

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http://dx.doi.org/10.2337/db18-1128DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6609989PMC
July 2019

Laparoscopy in a Combat Theater of Operations.

J Trauma Acute Care Surg 2018 09;85(3):648-649

From the Department of Surgery (M.J.B., C.J.R., E.M.R., J.A.B.), Walter Reed National Military Medical Center/Uniformed Services University, Bethesda, Maryland.

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http://dx.doi.org/10.1097/TA.0000000000001913DOI Listing
September 2018

Catastrophic Non-Survivable Brain Injury Care-Role 2/3.

Mil Med 2018 09;183(suppl_2):73-77

Joint Trauma System, 3698 Chambers Pass, Joint Base San Antonio, Fort Sam Houston, TX.

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http://dx.doi.org/10.1093/milmed/usy083DOI Listing
September 2018

Automated red blood cell exchange in preparation for filgrastim mobilization of autologous peripheral blood hematopoietic progenitor cells in a patient with sickle cell anemia.

J Clin Apher 2018 Jun 11;33(3):431-435. Epub 2017 Nov 11.

Transfusion Medicine and Apheresis Service, UMass Memorial Medical Center, Worcester, Massachusetts.

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http://dx.doi.org/10.1002/jca.21602DOI Listing
June 2018

Development of an emergency general surgery process improvement program.

Patient Saf Surg 2018 20;12:17. Epub 2018 Jun 20.

1Department of Surgery, Walter Reed National Military Medical Center, 8901 Rockville Pike, Bethesda, MD 20889 USA.

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http://dx.doi.org/10.1186/s13037-018-0167-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6011594PMC
June 2018

SeekDeep: single-base resolution de novo clustering for amplicon deep sequencing.

Nucleic Acids Res 2018 02;46(4):e21

Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA.

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http://dx.doi.org/10.1093/nar/gkx1201DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5829576PMC
February 2018

Integrative microRNA and mRNA deep-sequencing expression profiling in endemic Burkitt lymphoma.

BMC Cancer 2017 Nov 13;17(1):761. Epub 2017 Nov 13.

Department of Bioinformatics & Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA.

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http://dx.doi.org/10.1186/s12885-017-3711-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5683570PMC
November 2017

Military use of tranexamic acid in combat trauma: Does it matter?

J Trauma Acute Care Surg 2017 10;83(4):579-588

United States Army Institute of Surgical Research (J.T.H., A.P.C., K.R.G.), Battlefield Health and Trauma Center for Human Integrative Physiology (J.T.H.), Department of Defense Joint Trauma System (Z.T.S.), Joint Base San Antonio-Fort Sam Houston, Texas; Bureau of Medicine and Surgery (Z.T.S.), US Navy, Falls Church, Virginia; Department of Surgery (J.A.B.), Uniformed Services University of the Health Sciences (J.A.B.); and Walter Reed National Military Medical Center (J.A.B.), Bethesda, Maryland.

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http://dx.doi.org/10.1097/TA.0000000000001613DOI Listing
October 2017

FLT1 and transcriptome-wide polyadenylation site (PAS) analysis in preeclampsia.

Sci Rep 2017 09 22;7(1):12139. Epub 2017 Sep 22.

RNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA, USA.

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http://dx.doi.org/10.1038/s41598-017-11639-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5610261PMC
September 2017

Therapeutic plasma exchange performed in tandem with hemodialysis without supplemental calcium in the apheresis circuit.

J Clin Apher 2017 Jun 13;32(3):154-157. Epub 2016 May 13.

Transfusion Medicine and Apheresis Service, UMass Memorial Medical Center, Worcester, Massachusetts.

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http://dx.doi.org/10.1002/jca.21473DOI Listing
June 2017

Therapeutic apheresis using a mononuclear cell program to lower the microfilaria burden of a 23-year-old African woman with loiasis.

J Clin Apher 2017 Jun 15;32(3):200-202. Epub 2016 Jun 15.

Transfusion Medicine and Apheresis Service, UMass Memorial Medical Center, Worcester, Massachusetts.

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http://dx.doi.org/10.1002/jca.21479DOI Listing
June 2017

Comprehensive Transcriptome and Mutational Profiling of Endemic Burkitt Lymphoma Reveals EBV Type-Specific Differences.

Mol Cancer Res 2017 05;15(5):563-576

Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, Massachusetts.

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http://dx.doi.org/10.1158/1541-7786.MCR-16-0305DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5471630PMC
May 2017

Early venous thromboembolism chemoprophylaxis in combat-related penetrating brain injury.

J Neurosurg 2017 Apr 17;126(4):1047-1055. Epub 2016 Jun 17.

Division of Neurosurgery, Department of Surgery, Uniformed Services University of the Health Sciences, Walter Reed National Military Medical Center, Bethesda, Maryland.

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http://dx.doi.org/10.3171/2016.4.JNS16101DOI Listing
April 2017

The Coalition for National Trauma Research supports the call for a national trauma research action plan.

J Trauma Acute Care Surg 2017 03;82(3):637-645

From the Department of Surgery (R.C.), University of California San Diego, LA Jolla, California; Department of Surgery (R.A.K.), University of Maryland School of Medicine, College Park, Maryland; Department of Surgery (J.W.S.), University of Louisville, Louisville, KY; Department of Surgery (B.L.Z.), Indiana University-Purdue University Indianapolis, Indianapolis, Indiana; Stephen R. Weiner Department of Surgery (C.J.H.), Beth Israel Deaconess Medical Center, Boston, Massachusetts; Department of Surgery (F.A.M.), University of Florida, Gainesville, Florida; Department of Surgery (J.A.B.), Uniformed Services University of the Health Sciences, Bethesda, Maryland; Department of Neurosurgery (A.V.), Virginia Commonwealth University, Richmond, Virginia; Department of Surgery (G.J.J.), University of California-Davis, Davis, California; Department of Surgery (D.H.J.), University of Texas Health Science Center at San Antonio, San Antonio, Texas; Department of Surgery (K.A.D.), Yale School of Medicine, New Haven, Connecticut; National Trauma Institute (M.A.P), San Antonio, Texas; and Department of Surgery (R.V.M.), University of Washington, Seattle, Washington.

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http://dx.doi.org/10.1097/TA.0000000000001353DOI Listing
March 2017

Human and Epstein-Barr Virus miRNA Profiling as Predictive Biomarkers for Endemic Burkitt Lymphoma.

Front Microbiol 2017 28;8:501. Epub 2017 Mar 28.

Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical SchoolWorcester, MA, USA; Division of Transfusion Medicine, Department of Medicine, University of Massachusetts Medical SchoolWorcester, MA, USA.

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http://dx.doi.org/10.3389/fmicb.2017.00501DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5368269PMC
March 2017

Longitudinal Pooled Deep Sequencing of the Plasmodium vivax K12 Kelch Gene in Cambodia Reveals a Lack of Selection by Artemisinin.

Am J Trop Med Hyg 2016 Dec 31;95(6):1409-1412. Epub 2016 Oct 31.

Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, North Carolina.

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http://dx.doi.org/10.4269/ajtmh.16-0566DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5154458PMC
December 2016

Evaluation of role 2 (R2) medical resources in the Afghanistan combat theater: Initial review of the joint trauma system R2 registry.

J Trauma Acute Care Surg 2016 Nov;81(5 Suppl 2 Proceedings of the 2015 Military Health System Research Symposium):S121-S127

From the US Army Institute of Surgical Research (E.M., T.D.L., S.A.S., M.A.S., M.W., K.R.G.), San Antonio, TX; The Department of Surgery at Uniformed Services University of the Health Sciences & the Walter Reed National Military Medical Center (J.A.B.), Bethesda, MD; Joint Trauma System (Z.T.S.), San Antonio, TX; Royal Center for Defence Medicine (R.R., T.H.), Birmingham, UK; US Army Medical Department Center and School (I.B.L.), San Antonio, TX; and US Army Medical Research and Materiel Command (S.C., K.N.R.), Ft Detrick, MD.

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http://dx.doi.org/10.1097/TA.0000000000001092DOI Listing
November 2016

Origins and importance of the joint trauma system.

J Trauma Acute Care Surg 2016 11;81(5 Suppl 2 Proceedings of the 2015 Military Health System Research Symposium):S75-S76

From the University of Texas Health Science Center at San Antonio, San Antonio, Texas (D.H.J.); and the Department of Surgery at Uniformed Services University and Walter Reed National Military Medical Center, Bethesda, Maryland (J.B.).

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http://dx.doi.org/10.1097/TA.0000000000001219DOI Listing
November 2016

Malaria - how this parasitic infection aids and abets EBV-associated Burkitt lymphomagenesis.

Curr Opin Virol 2016 10 27;20:78-84. Epub 2016 Sep 27.

Program for Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA.

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http://dx.doi.org/10.1016/j.coviro.2016.09.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5102755PMC
October 2016

Physiological measurements corroborate symptomatic improvement after therapeutic leukapheresis in a pregnant woman with chronic myelogenous leukemia.

J Clin Apher 2016 Aug 6;31(4):393-7. Epub 2015 Jun 6.

Transfusion Medicine and Apheresis Service, UMass Memorial Medical Center, Worcester, Massachusetts.

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http://dx.doi.org/10.1002/jca.21410DOI Listing
August 2016

Assessment of Groin Application of Junctional Tourniquets in a Manikin Model.

Prehosp Disaster Med 2016 Aug 27;31(4):358-63. Epub 2016 May 27.

1US Army Institute of Surgical Research - Damage Control Resuscitation,JBSA Fort Sam Houston,TexasUSA.

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http://dx.doi.org/10.1017/S1049023X16000443DOI Listing
August 2016

Short-Term Outcomes and Complications of Damage Control and Definitive Laparotomy in Deployed Combat Environments: 2002 to 2011.

Mil Med 2016 Mar;181(3):277-82

Division of Acute Care Surgery, Department of Surgery, University of Texas Health Sciences Center at Houston, 7000 Fannin Street, Houston, TX 77030.

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http://dx.doi.org/10.7205/MILMED-D-14-00726DOI Listing
March 2016

The Effect of a Golden Hour Policy on the Morbidity and Mortality of Combat Casualties.

JAMA Surg 2016 Jan;151(1):15-24

Joint Trauma System, United States Army Institute of Surgical Research, Joint Base San Antonio-Ft Sam Houston, Texas2Uniformed Services University of the Health Sciences, Bethesda, Maryland.

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http://archsurg.jamanetwork.com/article.aspx?doi=10.1001/jam
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http://dx.doi.org/10.1001/jamasurg.2015.3104DOI Listing
January 2016

A deep sequencing tool for partitioning clearance rates following antimalarial treatment in polyclonal infections.

Evol Med Public Health 2016 Jan 27;2016(1):21-36. Epub 2016 Jan 27.

Division of Infectious Diseases, University of North Carolina School of Medicine, Chapel Hill, NC, USA; Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, NC, USA; Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, NC, USA.

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http://dx.doi.org/10.1093/emph/eov036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4753362PMC
January 2016

Automated red blood cell exchange for acute drug removal in a patient with sirolimus toxicity.

J Clin Apher 2015 Dec 24;30(6):367-70. Epub 2015 Jan 24.

Transfusion Medicine and Apheresis Service, UMass Memorial Medical Center, Worcester, Massachusetts.

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http://dx.doi.org/10.1002/jca.21381DOI Listing
December 2015

Evaluation of the Effectiveness of the 2008 Postsplenectomy Vaccination Joint Theater Trauma System Clinical Practice Guideline.

Mil Med 2015 Nov;180(11):1170-7

San Antonio Military Medical Center Department of Infectious Disease, 3551 Roger Brooke Drive, JBSA Fort Sam Houston, TX 78234.

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http://dx.doi.org/10.7205/MILMED-D-14-00295DOI Listing
November 2015

Prospective surveillance of D- recipients of D+ apheresis platelets: alloimmunization against D is not detected.

Transfusion 2015 Jun 19;55(6):1327-30. Epub 2014 Dec 19.

Transfusion Medicine Service, UMass Memorial Medical Center, Worcester, Massachusetts.

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http://dx.doi.org/10.1111/trf.12972DOI Listing
June 2015

Prehospital pain medication use by U.S. Forces in Afghanistan.

Mil Med 2015 Mar;180(3):304-9

Joint Trauma System, US Army Institute of Surgical Research, 3698 Chambers Pass, Fort Sam Houston, TX 78234.

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http://dx.doi.org/10.7205/MILMED-D-14-00257DOI Listing
March 2015

Nonoperative management of splenic injury in combat: 2002-2012.

Mil Med 2015 Mar;180(3 Suppl):29-32

U.S. Military General Surgery, San Antonio Military Medical Center, 3851 Roger Brooke Drive #3600, San Antonio, TX 78234-7767.

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http://dx.doi.org/10.7205/MILMED-D-14-00411DOI Listing
March 2015

Interleukin-6 and interleukin-10 gene promoter polymorphisms and risk of endemic Burkitt lymphoma.

Am J Trop Med Hyg 2014 Sep 28;91(3):649-54. Epub 2014 Jul 28.

Department of Biomedical Sciences and Technology, Maseno University, Maseno, Kenya; Center for Global Health Research, Kenya Medical Research Institute, Kisumu, Kenya; Department of Pediatrics, University of Massachusetts Medical School, Worcester, Massachusetts; Department of Medicine, Division of Transfusion, and Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, Massachusetts; Department of Quantitative Health Sciences, University of Massachusetts Medical School, Worcester, Massachusetts

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http://dx.doi.org/10.4269/ajtmh.13-0616DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4155573PMC
September 2014

Inferring the evolutionary history of primate microRNA binding sites: overcoming motif counting biases.

Mol Biol Evol 2014 Jul 9;31(7):1894-901. Epub 2014 Apr 9.

Swiss Institute of Bioinformatics (SIB), Lausanne, SwitzerlandEcole Polytechnique Federale de Lausanne (EPFL), School of Life Sciences, Lausanne, Switzerland.

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http://dx.doi.org/10.1093/molbev/msu129DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4069616PMC
July 2014

Differing patterns of selection and geospatial genetic diversity within two leading Plasmodium vivax candidate vaccine antigens.

PLoS Negl Trop Dis 2014 Apr 17;8(4):e2796. Epub 2014 Apr 17.

Division of Infectious Diseases, University of North Carolina School of Medicine, Chapel Hill, North Carolina, United States of America.

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http://dx.doi.org/10.1371/journal.pntd.0002796DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3990511PMC
April 2014

Sickle cell trait is not associated with endemic Burkitt lymphoma: an ethnicity and malaria endemicity-matched case-control study suggests factors controlling EBV may serve as a predictive biomarker for this pediatric cancer.

Int J Cancer 2014 Feb 16;134(3):645-53. Epub 2013 Aug 16.

Center for Global Health Research, Kenyan Medical Research Institute, Kisumu, Kenya; Department of Biomedical Sciences and Technology, Maseno University, Maseno, Kenya.

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http://dx.doi.org/10.1002/ijc.28378DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3830732PMC
February 2014

Re: It is time to reassess critical care evacuation.

J Trauma Acute Care Surg 2014 Jan;76(1):250-1

Department of Surgery Naval Medical Center San Diego, CA Naval Research Laboratory Stennis Space Center Gulfport, Mississippi US Army Institute of Surgical Research Fort Sam Houston, Texas.

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http://dx.doi.org/10.1097/TA.0b013e3182aaed54DOI Listing
January 2014

Military trauma system in Afghanistan: lessons for civil systems?

Curr Opin Crit Care 2013 Dec;19(6):569-77

aUS Army Institute of Surgical Research, Joint Base San Antonio, Fort Sam Houston b59th Medical Wing, Joint Base San Antonio, Texas cThe Norman M. Rich Department of Surgery, The Uniformed Services University of the Health Sciences, Bethesda, Maryland, USA dAcademic Department Military Surgery and Trauma, Royal Centre for Defence Medicine, Birmingham eAcademic Unit of Surgery, Glasgow Royal Infirmary, Glasgow, UK. The opinions or assertions contained herein are the private views of the authors and are not to be construed as official or as reflecting the views of the US Department of the Department of Defense or UK Ministry of Defence.

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http://dx.doi.org/10.1097/MCC.0000000000000037DOI Listing
December 2013

Ahead of the curve: next generation estimators of drug resistance in malaria infections.

Trends Parasitol 2013 Jul 5;29(7):321-8. Epub 2013 Jun 5.

Center for Infectious Disease Dynamics, Department of Biology, The Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1016/j.pt.2013.05.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3694767PMC
July 2013

Military trauma training at civilian centers: a decade of advancements.

J Trauma Acute Care Surg 2012 Dec;73(6 Suppl 5):S483-9

Dewitt-Daughtry Family Department of Surgery, Miami, Florida, USA.

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http://dx.doi.org/10.1097/TA.0b013e31827546fbDOI Listing
December 2012

Use of massively parallel pyrosequencing to evaluate the diversity of and selection on Plasmodium falciparum csp T-cell epitopes in Lilongwe, Malawi.

J Infect Dis 2012 Aug 2;206(4):580-7. Epub 2012 May 2.

Division of Transfusion Medicine and Program in Bioinformatics and Integrative Biology, University of Massachusetts School of Medicine, Worcester, USA.

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http://dx.doi.org/10.1093/infdis/jis329DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3491736PMC
August 2012

Organophosphate antidote auto-injectors vs. traditional administration: a time motion study.

J Emerg Med 2009 Aug 2;37(2):139-43. Epub 2008 Jun 2.

Institute of Biosecurity, Saint Louis University, School of Public Health, St. Louis, Missouri 63104, USA.

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http://dx.doi.org/10.1016/j.jemermed.2007.09.043DOI Listing
August 2009

Improved survival of critically ill trauma patients treated with recombinant human erythropoietin.

J Trauma 2008 Aug;65(2):285-97; discussion 297-9

Department of Surgery, University of Michigan Medical Center, Ann Arbor, Michigan 48109-0033, USA.

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http://dx.doi.org/10.1097/TA.0b013e31817f2c6eDOI Listing
August 2008

Primate segmental duplications: crucibles of evolution, diversity and disease.

Nat Rev Genet 2006 Jul 13;7(7):552-64. Epub 2006 Jun 13.

Department of Pathology, Case Western University School of Medicine and University Hospitals of Cleveland, Ohio 44106, USA.

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http://dx.doi.org/10.1038/nrg1895DOI Listing
July 2006

Fine-scale structural variation of the human genome.

Nat Genet 2005 Jul 15;37(7):727-32. Epub 2005 May 15.

Department of Genome Sciences, University of Washington School of Medicine, 1705 NE Pacific Street, Seattle, Washington 98195, USA.

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http://bioinfo.mc.vanderbilt.edu/journal_club2006/2005/05-11
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http://www.nature.com/doifinder/10.1038/ng1562
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http://dx.doi.org/10.1038/ng1562DOI Listing
July 2005

Manipulating multiple sequence alignments via MaM and WebMaM.

Nucleic Acids Res 2005 Jul;33(Web Server issue):W295-8

Department of EECS, Case Western Reserve University, Cleveland, OH, USA.

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http://dx.doi.org/10.1093/nar/gki406DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160167PMC
July 2005

Endovascular treatment of segmental ischemic colitis.

Dig Dis Sci 2005 Apr;50(4):774-9

Department of Surgery, Division of General Surgery, St Louis University School of Medicine, St Louis, Missouri 63110-0250, USA.

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http://dx.doi.org/10.1007/s10620-005-2572-2DOI Listing
April 2005

The role of unequal crossover in alpha-satellite DNA evolution: a computational analysis.

J Comput Biol 2004 ;11(5):933-44

Department of EECS, Case Western Reserve University, Cleveland, OH 44106, USA.

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http://dx.doi.org/10.1089/cmb.2004.11.933DOI Listing
March 2005

Hotspots of mammalian chromosomal evolution.

Genome Biol 2004 8;5(4):R23. Epub 2004 Mar 8.

Department of Genetics, Center for Computational Genomics, Case Western Reserve University School of Medicine and University Hospitals of Cleveland, Cleveland, OH 44106, USA.

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http://genomebiology.biomedcentral.com/articles/10.1186/gb-2
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http://dx.doi.org/10.1186/gb-2004-5-4-r23DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC395782PMC
October 2004

Analysis of segmental duplications and genome assembly in the mouse.

Genome Res 2004 May;14(5):789-801

Department of Genetics, Center for Computational Genomics, Case Western Reserve University School of Medicine and University Hospitals of Cleveland, Cleveland, Ohio 4410, USA.

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http://dx.doi.org/10.1101/gr.2238404DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC479105PMC
May 2004

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:
Richard A Gibbs George M Weinstock Michael L Metzker Donna M Muzny Erica J Sodergren Steven Scherer Graham Scott David Steffen Kim C Worley Paula E Burch Geoffrey Okwuonu Sandra Hines Lora Lewis Christine DeRamo Oliver Delgado Shannon Dugan-Rocha George Miner Margaret Morgan Alicia Hawes Rachel Gill Celera Robert A Holt Mark D Adams Peter G Amanatides Holly Baden-Tillson Mary Barnstead Soo Chin Cheryl A Evans Steve Ferriera Carl Fosler Anna Glodek Zhiping Gu Don Jennings Cheryl L Kraft Trixie Nguyen Cynthia M Pfannkoch Cynthia Sitter Granger G Sutton J Craig Venter Trevor Woodage Douglas Smith Hong-Mei Lee Erik Gustafson Patrick Cahill Arnold Kana Lynn Doucette-Stamm Keith Weinstock Kim Fechtel Robert B Weiss Diane M Dunn Eric D Green Robert W Blakesley Gerard G Bouffard Pieter J De Jong Kazutoyo Osoegawa Baoli Zhu Marco Marra Jacqueline Schein Ian Bosdet Chris Fjell Steven Jones Martin Krzywinski Carrie Mathewson Asim Siddiqui Natasja Wye John McPherson Shaying Zhao Claire M Fraser Jyoti Shetty Sofiya Shatsman Keita Geer Yixin Chen Sofyia Abramzon William C Nierman Paul H Havlak Rui Chen K James Durbin Amy Egan Yanru Ren Xing-Zhi Song Bingshan Li Yue Liu Xiang Qin Simon Cawley Kim C Worley A J Cooney Lisa M D'Souza Kirt Martin Jia Qian Wu Manuel L Gonzalez-Garay Andrew R Jackson Kenneth J Kalafus Michael P McLeod Aleksandar Milosavljevic Davinder Virk Andrei Volkov David A Wheeler Zhengdong Zhang Jeffrey A Bailey Evan E Eichler Eray Tuzun Ewan Birney Emmanuel Mongin Abel Ureta-Vidal Cara Woodwark Evgeny Zdobnov Peer Bork Mikita Suyama David Torrents Marina Alexandersson Barbara J Trask Janet M Young Hui Huang Huajun Wang Heming Xing Sue Daniels Darryl Gietzen Jeanette Schmidt Kristian Stevens Ursula Vitt Jim Wingrove Francisco Camara M Mar Albà Josep F Abril Roderic Guigo Arian Smit Inna Dubchak Edward M Rubin Olivier Couronne Alexander Poliakov Norbert Hübner Detlev Ganten Claudia Goesele Oliver Hummel Thomas Kreitler Young-Ae Lee Jan Monti Herbert Schulz Heike Zimdahl Heinz Himmelbauer Hans Lehrach Howard J Jacob Susan Bromberg Jo Gullings-Handley Michael I Jensen-Seaman Anne E Kwitek Jozef Lazar Dean Pasko Peter J Tonellato Simon Twigger Chris P Ponting Jose M Duarte Stephen Rice Leo Goodstadt Scott A Beatson Richard D Emes Eitan E Winter Caleb Webber Petra Brandt Gerald Nyakatura Margaret Adetobi Francesca Chiaromonte Laura Elnitski Pallavi Eswara Ross C Hardison Minmei Hou Diana Kolbe Kateryna Makova Webb Miller Anton Nekrutenko Cathy Riemer Scott Schwartz James Taylor Shan Yang Yi Zhang Klaus Lindpaintner T Dan Andrews Mario Caccamo Michele Clamp Laura Clarke Valerie Curwen Richard Durbin Eduardo Eyras Stephen M Searle Gregory M Cooper Serafim Batzoglou Michael Brudno Arend Sidow Eric A Stone J Craig Venter Bret A Payseur Guillaume Bourque Carlos López-Otín Xose S Puente Kushal Chakrabarti Sourav Chatterji Colin Dewey Lior Pachter Nicolas Bray Von Bing Yap Anat Caspi Glenn Tesler Pavel A Pevzner David Haussler Krishna M Roskin Robert Baertsch Hiram Clawson Terrence S Furey Angie S Hinrichs Donna Karolchik William J Kent Kate R Rosenbloom Heather Trumbower Matt Weirauch David N Cooper Peter D Stenson Bin Ma Michael Brent Manimozhiyan Arumugam David Shteynberg Richard R Copley Martin S Taylor Harold Riethman Uma Mudunuri Jane Peterson Mark Guyer Adam Felsenfeld Susan Old Stephen Mockrin Francis Collins

Nature 2004 Apr;428(6982):493-521

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, Texas 77030, USA. http://www.hgsc.bcm.tmc.edu

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http://dx.doi.org/10.1038/nature02426DOI Listing
April 2004

Recent segmental duplications in the working draft assembly of the brown Norway rat.

Genome Res 2004 Apr;14(4):493-506

Department of Genetics, Center for Computational Genomics, Case Western Reserve University School of Medicine and University Hospitals of Cleveland, Cleveland, Ohio 44106, USA.

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http://www.genome.org/cgi/doi/10.1101/gr.1907504
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http://dx.doi.org/10.1101/gr.1907504DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC383293PMC
April 2004

An algorithmic analysis of the role of unequal crossover in alpha-satellite DNA evolution.

Genome Inform 2002 ;13:93-102

Department of EECS, Center for Computational Genomics, Case Western Reserve University, 10900 Euclid Ave., Cleveland, OH 44106, USA.

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November 2003

An Alu transposition model for the origin and expansion of human segmental duplications.

Am J Hum Genet 2003 Oct 22;73(4):823-34. Epub 2003 Sep 22.

Department of Genetics, Center for Computational Genomics, Case Western Reserve University School of Medicine and University Hospitals of Cleveland, Cleveland, OH, 44106, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S000292970763631
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1180605PMC
http://dx.doi.org/10.1086/378594DOI Listing
October 2003

The DNA sequence of human chromosome 7.

Authors:
Ladeana W Hillier Robert S Fulton Lucinda A Fulton Tina A Graves Kymberlie H Pepin Caryn Wagner-McPherson Dan Layman Jason Maas Sara Jaeger Rebecca Walker Kristine Wylie Mandeep Sekhon Michael C Becker Michelle D O'Laughlin Mark E Schaller Ginger A Fewell Kimberly D Delehaunty Tracie L Miner William E Nash Matt Cordes Hui Du Hui Sun Jennifer Edwards Holland Bradshaw-Cordum Johar Ali Stephanie Andrews Amber Isak Andrew Vanbrunt Christine Nguyen Feiyu Du Betty Lamar Laura Courtney Joelle Kalicki Philip Ozersky Lauren Bielicki Kelsi Scott Andrea Holmes Richard Harkins Anthony Harris Cynthia Madsen Strong Shunfang Hou Chad Tomlinson Sara Dauphin-Kohlberg Amy Kozlowicz-Reilly Shawn Leonard Theresa Rohlfing Susan M Rock Aye-Mon Tin-Wollam Amanda Abbott Patrick Minx Rachel Maupin Catrina Strowmatt Phil Latreille Nancy Miller Doug Johnson Jennifer Murray Jeffrey P Woessner Michael C Wendl Shiaw-Pyng Yang Brian R Schultz John W Wallis John Spieth Tamberlyn A Bieri Joanne O Nelson Nicolas Berkowicz Patricia E Wohldmann Lisa L Cook Matthew T Hickenbotham James Eldred Donald Williams Joseph A Bedell Elaine R Mardis Sandra W Clifton Stephanie L Chissoe Marco A Marra Christopher Raymond Eric Haugen Will Gillett Yang Zhou Rose James Karen Phelps Shawn Iadanoto Kerry Bubb Elizabeth Simms Ruth Levy James Clendenning Rajinder Kaul W James Kent Terrence S Furey Robert A Baertsch Michael R Brent Evan Keibler Paul Flicek Peer Bork Mikita Suyama Jeffrey A Bailey Matthew E Portnoy David Torrents Asif T Chinwalla Warren R Gish Sean R Eddy John D McPherson Maynard V Olson Evan E Eichler Eric D Green Robert H Waterston Richard K Wilson

Nature 2003 Jul;424(6945):157-64

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature01782DOI Listing
July 2003

Aminoglycosides for intra-abdominal infection: equal to the challenge?

Surg Infect (Larchmt) 2002 ;3(4):315-35

Department of Surgery, Saint Louis University School of Medicine, Saint Louis, Missouri 63110, USA.

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http://dx.doi.org/10.1089/109629602762539544DOI Listing
May 2003

Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome.

Genome Res 2003 Mar;13(3):358-68

Department of Genetics, Case Western Reserve University School of Medicine and University Hospitals of Cleveland, Cleveland, Ohio 44106, USA.

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http://dx.doi.org/10.1101/gr.923303DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC430288PMC
March 2003

Recent segmental duplications in the human genome.

Science 2002 Aug;297(5583):1003-7

Department of Genetics, Center for Computational Genomics, and Center for Human Genetics, Case Western Reserve University School of Medicine and University Hospitals of Cleveland, Cleveland, OH 44106, USA.

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http://dx.doi.org/10.1126/science.1072047DOI Listing
August 2002

Intensive insulin therapy in critically ill patients.

N Engl J Med 2002 May;346(20):1586-8; author reply 1586-8

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May 2002

Human-specific duplication and mosaic transcripts: the recent paralogous structure of chromosome 22.

Am J Hum Genet 2002 Jan 30;70(1):83-100. Epub 2001 Nov 30.

Department of Genetics and Center for Human Genetics, Case Western Reserve University School of Medicine and University Hospitals of Cleveland, OH, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S000292970761285
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http://dx.doi.org/10.1086/338458DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC419985PMC
January 2002