Jeffery P Demuth

Jeffery P Demuth

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Jeffery P Demuth

Jeffery P Demuth

Publications by authors named "Jeffery P Demuth"

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The within-host dynamics of infection in trans-generationally primed flour beetles.

Mol Ecol 2017 Jul 4;26(14):3794-3807. Epub 2017 Apr 4.

Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, 08544, USA.

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http://dx.doi.org/10.1111/mec.14088DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5653231PMC
July 2017

Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface.

Genome Biol 2016 11 11;17(1):227. Epub 2016 Nov 11.

Human Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s13059-016-1088-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5105290PMC
November 2016

Haldane's Rule: Genetic Bases and Their Empirical Support.

J Hered 2016 09 27;107(5):383-91. Epub 2016 May 27.

From the Department of Biology, Indiana University, 1001 East Third Street, Bloomington, IN 47405 (Delph); and Department of Biology, University of Texas at Arlington, 501 South Nedderman Drive, Arlington, TX 76063 (Demuth).

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http://dx.doi.org/10.1093/jhered/esw026DOI Listing
September 2016

An information-theoretic approach to estimating the composite genetic effects contributing to variation among generation means: Moving beyond the joint-scaling test for line cross analysis.

Evolution 2016 Feb 13;70(2):420-32. Epub 2016 Jan 13.

Department of Biology, University of Texas at Arlington, Texas, 76019.

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http://dx.doi.org/10.1111/evo.12844DOI Listing
February 2016

The fragile Y hypothesis: Y chromosome aneuploidy as a selective pressure in sex chromosome and meiotic mechanism evolution.

Bioessays 2015 Sep 22;37(9):942-50. Epub 2015 Jul 22.

Department of Biology, University of Texas at Arlington, Arlington, TX, USA.

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http://dx.doi.org/10.1002/bies.201500040DOI Listing
September 2015

Estimating tempo and mode of Y chromosome turnover: explaining Y chromosome loss with the fragile Y hypothesis.

Genetics 2014 Jun;197(2):561-72

Department of Biology, University of Texas, Box 19498, Arlington, Texas 76019.

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http://dx.doi.org/10.1534/genetics.114.164269DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4063915PMC
June 2014

Genetic architecture of isolation between two species of Silene with sex chromosomes and Haldane's rule.

Evolution 2014 Feb 30;68(2):332-42. Epub 2013 Sep 30.

Department of Biology, 501 S. Nedderman Drive, University of Texas at Arlington, Arlington, Texas, 76019.

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http://dx.doi.org/10.1111/evo.12269DOI Listing
February 2014

Haldane's rule in marsupials: what happens when both sexes are functionally hemizygous?

J Hered 2012 May-Jun;103(3):453-8. Epub 2012 Feb 29.

Department of Biology, University of Texas at Arlington, Arlington, TX 76010-0498, USA.

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http://dx.doi.org/10.1093/jhered/esr154DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3331990PMC
August 2012

Why chromosome palindromes?

Int J Evol Biol 2012 15;2012:207958. Epub 2012 Jul 15.

Department of Biology, University of Texas at Arlington, Box 19498, Arlington, TX 76019, USA.

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http://dx.doi.org/10.1155/2012/207958DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3403216PMC
August 2012

Sex, war, and disease: the role of parasite infection on weapon development and mating success in a horned beetle (Gnatocerus cornutus).

PLoS One 2012 11;7(1):e28690. Epub 2012 Jan 11.

Department of Biology, The University of Texas at Arlington, Arlington, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0028690PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3256137PMC
May 2012

Hyperexpression of the X chromosome in both sexes results in extensive female bias of X-linked genes in the flour beetle.

Genome Biol Evol 2010 Jul 12;2:336-46. Epub 2010 Jul 12.

Department of Biology, The University of Texas at Arlington, USA.

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http://dx.doi.org/10.1093/gbe/evq024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2942036PMC
July 2010

Adaptive evolution of young gene duplicates in mammals.

Genome Res 2009 May;19(5):859-67

School of Informatics, Indiana University, Bloomington, IN 47405, USA.

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http://dx.doi.org/10.1101/gr.085951.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2675974PMC
May 2009

The life and death of gene families.

Bioessays 2009 Jan;31(1):29-39

Department of Biology, University of Texas, Arlington, TX, USA.

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http://doi.wiley.com/10.1002/bies.080085
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http://dx.doi.org/10.1002/bies.080085DOI Listing
January 2009

The genome of the model beetle and pest Tribolium castaneum.

Authors:
Stephen Richards Richard A Gibbs George M Weinstock Susan J Brown Robin Denell Richard W Beeman Richard Gibbs Richard W Beeman Susan J Brown Gregor Bucher Markus Friedrich Cornelis J P Grimmelikhuijzen Martin Klingler Marce Lorenzen Stephen Richards Siegfried Roth Reinhard Schröder Diethard Tautz Evgeny M Zdobnov Donna Muzny Richard A Gibbs George M Weinstock Tony Attaway Stephanie Bell Christian J Buhay Mimi N Chandrabose Dean Chavez Kerstin P Clerk-Blankenburg Andrew Cree Marvin Dao Clay Davis Joseph Chacko Huyen Dinh Shannon Dugan-Rocha Gerald Fowler Toni T Garner Jeffrey Garnes Andreas Gnirke Alica Hawes Judith Hernandez Sandra Hines Michael Holder Jennifer Hume Shalini N Jhangiani Vandita Joshi Ziad Mohid Khan LaRonda Jackson Christie Kovar Andrea Kowis Sandra Lee Lora R Lewis Jon Margolis Margaret Morgan Lynne V Nazareth Ngoc Nguyen Geoffrey Okwuonu David Parker Stephen Richards San-Juana Ruiz Jireh Santibanez Joël Savard Steven E Scherer Brian Schneider Erica Sodergren Diethard Tautz Selina Vattahil Donna Villasana Courtney S White Rita Wright Yoonseong Park Richard W Beeman Jeff Lord Brenda Oppert Marce Lorenzen Susan Brown Liangjiang Wang Joël Savard Diethard Tautz Stephen Richards George Weinstock Richard A Gibbs Yue Liu Kim Worley George Weinstock Christine G Elsik Justin T Reese Eran Elhaik Giddy Landan Dan Graur Peter Arensburger Peter Atkinson Richard W Beeman Jim Beidler Susan J Brown Jeffery P Demuth Douglas W Drury Yu-Zhou Du Haruhiko Fujiwara Marce Lorenzen Vincenza Maselli Mizuko Osanai Yoonseong Park Hugh M Robertson Zhijian Tu Jian-jun Wang Suzhi Wang Stephen Richards Henry Song Lan Zhang Erica Sodergren Doreen Werner Mario Stanke Burkhard Morgenstern Victor Solovyev Peter Kosarev Garth Brown Hsiu-Chuan Chen Olga Ermolaeva Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Donna Maglott Kim Pruitt Victor Sapojnikov Alexandre Souvorov Aaron J Mackey Robert M Waterhouse Stefan Wyder Evgeny M Zdobnov Evgeny M Zdobnov Stefan Wyder Evgenia V Kriventseva Tatsuhiko Kadowaki Peer Bork Manuel Aranda Riyue Bao Anke Beermann Nicola Berns Renata Bolognesi François Bonneton Daniel Bopp Susan J Brown Gregor Bucher Thomas Butts Arnaud Chaumot Robin E Denell David E K Ferrier Markus Friedrich Cassondra M Gordon Marek Jindra Martin Klingler Que Lan H Michael G Lattorff Vincent Laudet Cornelia von Levetsow Zhenyi Liu Rebekka Lutz Jeremy A Lynch Rodrigo Nunes da Fonseca Nico Posnien Rolf Reuter Siegfried Roth Joël Savard Johannes B Schinko Christian Schmitt Michael Schoppmeier Reinhard Schröder Teresa D Shippy Franck Simonnet Henrique Marques-Souza Diethard Tautz Yoshinori Tomoyasu Jochen Trauner Maurijn Van der Zee Michel Vervoort Nadine Wittkopp Ernst A Wimmer Xiaoyun Yang Andrew K Jones David B Sattelle Paul R Ebert David Nelson Jeffrey G Scott Richard W Beeman Subbaratnam Muthukrishnan Karl J Kramer Yasuyuki Arakane Richard W Beeman Qingsong Zhu David Hogenkamp Radhika Dixit Brenda Oppert Haobo Jiang Zhen Zou Jeremy Marshall Elena Elpidina Konstantin Vinokurov Cris Oppert Zhen Zou Jay Evans Zhiqiang Lu Picheng Zhao Niranji Sumathipala Boran Altincicek Andreas Vilcinskas Michael Williams Dan Hultmark Charles Hetru Haobo Jiang Cornelis J P Grimmelikhuijzen Frank Hauser Giuseppe Cazzamali Michael Williamson Yoonseong Park Bin Li Yoshiaki Tanaka Reinhard Predel Susanne Neupert Joachim Schachtner Peter Verleyen Florian Raible Peer Bork Markus Friedrich Kimberly K O Walden Hugh M Robertson Sergio Angeli Sylvain Forêt Gregor Bucher Stefan Schuetz Ryszard Maleszka Ernst A Wimmer Richard W Beeman Marce Lorenzen Yoshinori Tomoyasu Sherry C Miller Daniela Grossmann Gregor Bucher

Nature 2008 Apr 23;452(7190):949-55. Epub 2008 Mar 23.

Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/nature06784DOI Listing
April 2008

Accelerated rate of gene gain and loss in primates.

Genetics 2007 Nov 18;177(3):1941-9. Epub 2007 Oct 18.

Department of Biology and School of Informatics, Indiana University, Bloomington, Indiana 47405, USA.

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http://dx.doi.org/10.1534/genetics.107.080077DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2147951PMC
November 2007

Evolutionary and biomedical insights from the rhesus macaque genome.

Authors:
Richard A Gibbs Jeffrey Rogers Michael G Katze Roger Bumgarner George M Weinstock Elaine R Mardis Karin A Remington Robert L Strausberg J Craig Venter Richard K Wilson Mark A Batzer Carlos D Bustamante Evan E Eichler Matthew W Hahn Ross C Hardison Kateryna D Makova Webb Miller Aleksandar Milosavljevic Robert E Palermo Adam Siepel James M Sikela Tony Attaway Stephanie Bell Kelly E Bernard Christian J Buhay Mimi N Chandrabose Marvin Dao Clay Davis Kimberly D Delehaunty Yan Ding Huyen H Dinh Shannon Dugan-Rocha Lucinda A Fulton Ramatu Ayiesha Gabisi Toni T Garner Jennifer Godfrey Alicia C Hawes Judith Hernandez Sandra Hines Michael Holder Jennifer Hume Shalini N Jhangiani Vandita Joshi Ziad Mohid Khan Ewen F Kirkness Andrew Cree R Gerald Fowler Sandra Lee Lora R Lewis Zhangwan Li Yih-Shin Liu Stephanie M Moore Donna Muzny Lynne V Nazareth Dinh Ngoc Ngo Geoffrey O Okwuonu Grace Pai David Parker Heidie A Paul Cynthia Pfannkoch Craig S Pohl Yu-Hui Rogers San Juana Ruiz Aniko Sabo Jireh Santibanez Brian W Schneider Scott M Smith Erica Sodergren Amanda F Svatek Teresa R Utterback Selina Vattathil Wesley Warren Courtney Sherell White Asif T Chinwalla Yucheng Feng Aaron L Halpern Ladeana W Hillier Xiaoqiu Huang Pat Minx Joanne O Nelson Kymberlie H Pepin Xiang Qin Granger G Sutton Eli Venter Brian P Walenz John W Wallis Kim C Worley Shiaw-Pyng Yang Steven M Jones Marco A Marra Mariano Rocchi Jacqueline E Schein Robert Baertsch Laura Clarke Miklós Csürös Jarret Glasscock R Alan Harris Paul Havlak Andrew R Jackson Huaiyang Jiang Yue Liu David N Messina Yufeng Shen Henry Xing-Zhi Song Todd Wylie Lan Zhang Ewan Birney Kyudong Han Miriam K Konkel Jungnam Lee Arian F A Smit Brygg Ullmer Hui Wang Jinchuan Xing Richard Burhans Ze Cheng John E Karro Jian Ma Brian Raney Xinwei She Michael J Cox Jeffery P Demuth Laura J Dumas Sang-Gook Han Janet Hopkins Anis Karimpour-Fard Young H Kim Jonathan R Pollack Tomas Vinar Charles Addo-Quaye Jeremiah Degenhardt Alexandra Denby Melissa J Hubisz Amit Indap Carolin Kosiol Bruce T Lahn Heather A Lawson Alison Marklein Rasmus Nielsen Eric J Vallender Andrew G Clark Betsy Ferguson Ryan D Hernandez Kashif Hirani Hildegard Kehrer-Sawatzki Jessica Kolb Shobha Patil Ling-Ling Pu Yanru Ren David Glenn Smith David A Wheeler Ian Schenck Edward V Ball Rui Chen David N Cooper Belinda Giardine Fan Hsu W James Kent Arthur Lesk David L Nelson William E O'brien Kay Prüfer Peter D Stenson James C Wallace Hui Ke Xiao-Ming Liu Peng Wang Andy Peng Xiang Fan Yang Galt P Barber David Haussler Donna Karolchik Andy D Kern Robert M Kuhn Kayla E Smith Ann S Zwieg

Science 2007 Apr;316(5822):222-34

Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.1126/science.1139247DOI Listing
April 2007

Population differentiation in the beetleTribolium castaneum. I. Genetic architecture.

Evolution 2007 Mar;61(3):494-509

Indiana University, Department of Biology, 1001 East 3rd Street, Bloomington, Indiana 47405, USA.

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http://dx.doi.org/10.1111/j.1558-5646.2007.00048.xDOI Listing
March 2007

Population differentiation in the beetle Tribolium castaneum. II. Haldane'S rule and incipient speciation.

Evolution 2007 Mar;61(3):694-9

Indiana University, Department of Biology, 1001 East 3rd Street, Bloomington, Indiana 47405, USA.

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http://dx.doi.org/10.1111/j.1558-5646.2007.00049.xDOI Listing
March 2007

Maternal expression increases the rate of bicoid evolution by relaxing selective constraint.

Genetica 2007 Jan 6;129(1):37-43. Epub 2006 Sep 6.

Department of Biology, Indiana University, Bloomington, IN 47405, USA.

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http://dx.doi.org/10.1007/s10709-006-0031-4DOI Listing
January 2007

The evolution of mammalian gene families.

PLoS One 2006 Dec 20;1:e85. Epub 2006 Dec 20.

Department of Biology and School of Informatics, Indiana University, Bloomington, Indiana, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000085PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1762380PMC
December 2006

CAFE: a computational tool for the study of gene family evolution.

Bioinformatics 2006 May 16;22(10):1269-71. Epub 2006 Mar 16.

K.U.Leuven, OKP Research Group Tiensestraat 102, 3000 Leuven, Belgium.

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http://dx.doi.org/10.1093/bioinformatics/btl097DOI Listing
May 2006

Maternal expression relaxes constraint on innovation of the anterior determinant, bicoid.

PLoS Genet 2005 Nov 11;1(5):e57. Epub 2005 Nov 11.

Department of Biology, Indiana University, Bloomington, Indiana, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.0010057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1283158PMC
November 2005

On the theoretical and empirical framework for studying genetic interactions within and among species.

Am Nat 2005 May 17;165(5):524-36. Epub 2005 Mar 17.

Department of Biology, Indiana University, 1001 East 3rd Street, Bloomington, Indiana 47405, USA.

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http://dx.doi.org/10.1086/429276DOI Listing
May 2005

Sexual selection favors female-biased sex ratios: the balance between the opposing forces of sex-ratio selection and sexual selection.

Am Nat 2003 Oct 16;162(4):403-14. Epub 2003 Oct 16.

Department of Biology, Indiana University, Bloomington, Indiana 47405, USA.

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http://dx.doi.org/10.1086/378211DOI Listing
October 2003