Jean-Christophe Lagier

Jean-Christophe Lagier

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Jean-Christophe Lagier

Jean-Christophe Lagier

Publications by authors named "Jean-Christophe Lagier"

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West Nile virus outbreak in the South of France: Implications for travel medicine.

Travel Med Infect Dis 2019 Mar - Apr;28:100-101. Epub 2019 Jan 7.

Aix Marseille Univ, IRD, AP-HM, MEPHI, IHU-Méditerranée Infection, Marseille, France.

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http://dx.doi.org/10.1016/j.tmaid.2019.01.002DOI Listing
May 2019

Failure of metagenomics in detecting emerging pathogens, the Clostridium difficile paradigm.

J Infect 2019 May 4;78(5):409-421. Epub 2019 Mar 4.

Aix Marseille Univ, IRD, MEPHI, IHU-Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005 Marseille, France. Electronic address:

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http://dx.doi.org/10.1016/j.jinf.2019.02.014DOI Listing
May 2019

Faecal microbiota transplantation shortens the colonisation period and allows re-entry of patients carrying carbapenamase-producing bacteria into medical care facilities.

Int J Antimicrob Agents 2019 Apr 23;53(4):355-361. Epub 2018 Nov 23.

AP-HM, IHU-Méditerranée Infection, Marseille, France; Aix Marseille Université, IRD, IHU-Méditerranée Infection, MEPHI, Marseille, France.

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http://dx.doi.org/10.1016/j.ijantimicag.2018.11.014DOI Listing
April 2019

Measles from Madagascar.

Travel Med Infect Dis 2019 Apr 5. Epub 2019 Apr 5.

IHU Méditerranée Infection, Assistance Publique-Hôpitaux de Marseille, Service de Maladies Infectieuses et Tropicales, 19-21 Bd Jean Moulin, Marseille, France; Aix Marseille Univ, IRD, AP-HM, MEPHI, IHU-Méditerranée Infection, Marseille, France. Electronic address:

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http://dx.doi.org/10.1016/j.tmaid.2019.04.003DOI Listing
April 2019

Human Bacterial Repertoire of the Urinary Tract: a Potential Paradigm Shift.

J Clin Microbiol 2019 Mar 27;57(3). Epub 2019 Feb 27.

Aix-Marseille Université, IRD, AP-HM, MEPHI, IHU-Méditerranée-Infection, Marseille, France

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http://jcm.asm.org/lookup/doi/10.1128/JCM.00675-18
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http://dx.doi.org/10.1128/JCM.00675-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6425171PMC
March 2019

[Management of an c or scratch].

Rev Prat 2019 Mar;69(3):324-327

Aix-Marseille Université, IRD, AP-HM, MEPHI, IHU-Méditerranée Infection, Marseille, France.

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March 2019

Noncontiguous finished genome sequence and description of Intestinimonas massiliensis sp. nov strain GD2 , the second Intestinimonas species cultured from the human gut.

Microbiologyopen 2019 01 14;8(1):e00621. Epub 2018 Apr 14.

Microbes, Evolution, Phylogeny and Infection, Aix-Marseille Université, UM 63, CNRS 7278, IRD 198, Inserm 1095, IHU - Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005 Marseille, France.

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http://dx.doi.org/10.1002/mbo3.621DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6341035PMC
January 2019

Whipple's disease and Tropheryma whipplei infections: when to suspect them and how to diagnose and treat them.

Curr Opin Infect Dis 2018 Dec;31(6):463-470

Aix Marseille Univ, IRD, MEPHI, IHU-Méditerranée Infection, Marseille, France.

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http://dx.doi.org/10.1097/QCO.0000000000000489DOI Listing
December 2018

Asymptomatic carriage of Streptococcus pneumoniae detected by qPCR on the palm of hands of populations in rural Senegal.

PLoS Negl Trop Dis 2018 12 10;12(12):e0006945. Epub 2018 Dec 10.

Aix-Marseille Univ, IRD, AP-HM, SSA, IHU-Méditerranée Infection, UMR Vecteurs-,InfectionsTropicales et Mediterranéennes (VITROME), Marseille, France.

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http://dx.doi.org/10.1371/journal.pntd.0006945DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6312329PMC
December 2018

Bacterial Cocktail to Treat Clostridium difficile Infection: Primum Non Nocere.

Clin Infect Dis 2018 Nov;67(11):1799

Institut de Recherche pour le Développement, Microbes Evolution Phylogeny and Infections, Institut Hospitalo Universitaire-Méditerranée Infection, Aix Marseille Université, France.

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http://dx.doi.org/10.1093/cid/ciy459DOI Listing
November 2018

Eggerthella timonensis sp. nov, a new species isolated from the stool sample of a pygmy female.

Microbiologyopen 2018 10 13;7(5):e00575. Epub 2018 Jun 13.

URMITE UM63, CNRS 7278, IRD 198, INSERM 1095, Institut Hospitalo-Universitaire Méditerranée-Infection, Faculté de médecine, Aix-Marseille Université, Marseille Cedex, France.

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http://dx.doi.org/10.1002/mbo3.575DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6182555PMC
October 2018

Mesenteric lymphadenitis as a presenting feature of Whipple's disease: Value of PCR analysis.

Int J Infect Dis 2018 Oct 7;75:15-17. Epub 2018 Aug 7.

Department of Internal Medicine, Hôpital de la Croix Rousse, Hospices Civils de Lyon, Université Claude Bernard Lyon 1, Lyon, France. Electronic address:

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http://dx.doi.org/10.1016/j.ijid.2018.08.003DOI Listing
October 2018

Sediminibacillus massiliensis sp. nov., a moderately halophilic, Gram-positive bacterium isolated from a stool sample of a young Senegalese man.

Antonie Van Leeuwenhoek 2018 Jul 7;111(7):1225-1236. Epub 2018 Feb 7.

URMITE, Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095, IHU - Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005, Marseille, France.

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http://dx.doi.org/10.1007/s10482-018-1032-xDOI Listing
July 2018

Limbic encephalitis as a relapse of Whipple's disease with digestive involvement and spondylodiscitis.

Infection 2018 Jul 10. Epub 2018 Jul 10.

Service des pathologies infectieuses et tropicales, CHU de Bordeaux, hôpital Pellegrin, 33000, Bordeaux, France.

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http://dx.doi.org/10.1007/s15010-018-1173-xDOI Listing
July 2018

Halophilic & halotolerant prokaryotes in humans.

Future Microbiol 2018 06 4;13:799-812. Epub 2018 May 4.

Aix Marseille University, IRD, MEPHI, IHU Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005 Marseille, France.

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http://dx.doi.org/10.2217/fmb-2017-0237DOI Listing
June 2018

Genome sequence and description of Haloferax massiliense sp. nov., a new halophilic archaeon isolated from the human gut.

Extremophiles 2018 May 12;22(3):485-498. Epub 2018 Feb 12.

Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, CNRS, (UMR 7278) IRD (198), INSERM (U1095), AMU (UM63), Institut Hospitalo-Universitaire Méditerranée-Infection, Aix-Marseille Université, 19-21 Boulevard Jean Moulin, 13385, Marseille Cedex 5, France.

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http://dx.doi.org/10.1007/s00792-018-1011-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5862939PMC
May 2018

Clostridium scindens Is Present in the Gut Microbiota during Clostridium difficile Infection: a Metagenomic and Culturomic Analysis.

J Clin Microbiol 2018 05 25;56(5). Epub 2018 Apr 25.

Aix-Marseille Université, IRD, MEPHI, APHM, IHU Méditerranée Infection, Marseille, France

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http://dx.doi.org/10.1128/JCM.01663-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5925712PMC
May 2018

Metagenomics, culturomics, and the human gut microbiota.

Expert Rev Anti Infect Ther 2018 05 23;16(5):373-375. Epub 2018 Apr 23.

a Aix Marseille University, IRD, MEPHI, IHU-Méditerranée Infection , Marseille , France.

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https://www.tandfonline.com/doi/full/10.1080/14787210.2018.1
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http://dx.doi.org/10.1080/14787210.2018.1467268DOI Listing
May 2018

The contribution of culturomics to the repertoire of isolated human bacterial and archaeal species.

Microbiome 2018 05 24;6(1):94. Epub 2018 May 24.

IRD, APHM, MEPHI, IHU Méditerranée Infection, Aix-Marseille Université, Marseille, France.

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http://dx.doi.org/10.1186/s40168-018-0485-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5966928PMC
May 2018

Culturing the human microbiota and culturomics.

Nat Rev Microbiol 2018 05 1:540-550. Epub 2018 May 1.

Aix Marseille Université, IRD, AP-HM, MEPHI, IHU Méditerranée Infection, Marseille, France.

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http://www.nature.com/articles/s41579-018-0041-0
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http://dx.doi.org/10.1038/s41579-018-0041-0DOI Listing
May 2018

How mass spectrometric approaches applied to bacterial identification have revolutionized the study of human gut microbiota.

Expert Rev Proteomics 2018 03 19;15(3):217-229. Epub 2018 Jan 19.

a Aix Marseille Université, Microbes Evolution Phylogeny and Infections (MEPHI), Assistance Publique - Hôpitaux de Marseille - IHU Méditerranée Infection , Marseille , France.

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http://dx.doi.org/10.1080/14789450.2018.1429271DOI Listing
March 2018

Early Fecal Microbiota Transplantation Improves Survival in Severe Clostridium difficile Infections.

Clin Infect Dis 2018 Feb;66(5):645-650

Aix Marseille Université, CNRS, IRD, INSERM, AP-HM, URMITE, IHU Méditerranée Infection.

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http://dx.doi.org/10.1093/cid/cix762DOI Listing
February 2018

Case report: Ribavirin and vitamin A in a severe case of measles.

Medicine (Baltimore) 2017 Dec;96(50):e9154

Aix Marseille Univ, CNRS 7278, IRD 198, INSERM 1095, AP-HM, URMITE, IHU Méditerranée-Infection, 19-21 Boulevard Jean Moulin, Marseille Cedex 5.

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http://dx.doi.org/10.1097/MD.0000000000009154DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5815733PMC
December 2017

Koch Postulate: Why Should we Grow Bacteria?

Arch Med Res 2017 11 6;48(8):774-779. Epub 2018 Mar 6.

Aix Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, INSERM 1095, Institut Hospitalo-Universitaire Méditerranée-Infection, Faculté de médecine, Marseille, France. Electronic address:

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http://dx.doi.org/10.1016/j.arcmed.2018.02.003DOI Listing
November 2017

From Expert Protocols to Standardized Management of Infectious Diseases.

Clin Infect Dis 2017 Aug;65(suppl_1):S12-S19

Aix Marseille Université, CNRS 7278, IRD 198, INSERM 1095, URMITE.

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http://dx.doi.org/10.1093/cid/cix403DOI Listing
August 2017

Many More Microbes in Humans: Enlarging the Microbiome Repertoire.

Clin Infect Dis 2017 Aug;65(suppl_1):S20-S29

CNRS 7278, IRD 198, INSERM 1095, URMITE.

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http://dx.doi.org/10.1093/cid/cix404DOI Listing
August 2017

Vaginal self-sampling as a diagnosis tool in low-income countries and potential applications for exploring the infectious causes of miscarriage.

Future Microbiol 2017 06 12;12:609-620. Epub 2017 Jun 12.

Aix-Marseille Université URMITE, IHU Méditerranée-Infection, UM63, CNRS 7278, IRD 198, INSERM 1095, 27 Boulevard Jean Moulin, 13385 Marseille Cedex 5, France.

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http://dx.doi.org/10.2217/fmb-2016-0179DOI Listing
June 2017

Prosthetic joint infection caused by Granulicatella adiacens: a case series and review of literature.

BMC Musculoskelet Disord 2017 Jun 23;18(1):276. Epub 2017 Jun 23.

Centre de Référence des Infections Ostéo-Articulaires (CRIOA) Sud-Méditerranée, Assistance Publique - Hôpitaux de Marseille, IHU-Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005, Marseille, France.

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http://dx.doi.org/10.1186/s12891-017-1630-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5481920PMC
June 2017

Samples and techniques highlighting the links between obesity and microbiota.

Microb Pathog 2017 May 30;106:119-126. Epub 2016 Jan 30.

Aix-Marseille Université URMITE, UM63, IHU Méditerranée Infection, CNRS 7278, IRD 198, INSERM 1095, 27 Boulevard Jean Moulin, 13385 Marseille Cedex 5, France. Electronic address:

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http://dx.doi.org/10.1016/j.micpath.2016.01.024DOI Listing
May 2017

Repertoire of human gut microbes.

Microb Pathog 2017 May 16;106:103-112. Epub 2016 Jun 16.

Aix-Marseille Université URMITE, UM63, CNRS 7278, IRD 198, INSERM 1095, 27 Boulevard Jean Moulin, 13385, Marseille Cedex 5, France; Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, 21589, Saudi Arabia. Electronic address:

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http://dx.doi.org/10.1016/j.micpath.2016.06.020DOI Listing
May 2017

Meta-analysis on efficacy of amoxicillin in uncomplicated severe acute malnutrition.

Microb Pathog 2017 05 29;106:76-77. Epub 2016 Jun 29.

Aix-Marseille Université, Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), Institut Hospitalier Universitaire Méditerranée-Infection, UM63, CNRS7278, IRD198, INSERM1095, Marseille, France. Electronic address:

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http://dx.doi.org/10.1016/j.micpath.2016.06.025DOI Listing
May 2017

Motorcycles, Cell Phones, and Electricity Can Dramatically Change the Epidemiology of Infectious Disease in Africa.

Am J Trop Med Hyg 2017 May 30;96(5):1009-1010. Epub 2017 Jan 30.

Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), IHU Méditerranée-Infection, Aix-Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095, Marseille, France.

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http://dx.doi.org/10.4269/ajtmh.16-0290DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5417187PMC
May 2017

Editorial: the resurrection of old antibiotics.

Int J Antimicrob Agents 2017 May 21;49(5):525. Epub 2017 Feb 21.

Aix-Marseille Université, IHU Méditerranée-Infection, URMITE-UM63, CNRS 7278, IRD 198, INSERM 1095, 19-21 Boulevard Jean Moulin, 13385 Marseille, France. Electronic address:

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http://dx.doi.org/10.1016/j.ijantimicag.2017.02.002DOI Listing
May 2017

Gut Bacteria Missing in Severe Acute Malnutrition, Can We Identify Potential Probiotics by Culturomics?

Front Microbiol 2017 23;8:899. Epub 2017 May 23.

URMITE, Aix Marseille Université, UM63, Centre National de la Recherche Scientifique 7278, IRD 198, Institut National de la Santé Et de la Recherche Médicale 1095, IHU-Méditerranée InfectionMarseille, France.

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http://dx.doi.org/10.3389/fmicb.2017.00899DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5440526PMC
May 2017

Infections in symptomatic travelers returning from the Arabian peninsula to France: A retrospective cross-sectional study.

Travel Med Infect Dis 2016 Jul-Aug;14(4):414-6. Epub 2016 May 14.

Aix Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, INSERM 1095, Marseille, France; IHU Méditerranée Infection, APHM Public Hospitals of Marseille, Marseille, France.

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http://dx.doi.org/10.1016/j.tmaid.2016.05.002DOI Listing
April 2017

Acute infections caused by Tropheryma whipplei.

Future Microbiol 2017 03 27;12:247-254. Epub 2017 Feb 27.

Aix Marseille Université, URMITE, IHU Méditerranée-Infection, UM63, CNRS 7278, IRD 198, INSERM 1095, 27 Boulevard Jean Moulin, 13385 Marseille Cedex 5, France.

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http://dx.doi.org/10.2217/fmb-2017-0178DOI Listing
March 2017

Blautia massiliensis sp. nov., isolated from a fresh human fecal sample and emended description of the genus Blautia.

Anaerobe 2017 Feb 5;43:47-55. Epub 2016 Dec 5.

URMITE UM63, CNRS7278, IRD198, INSERM1095, Faculté de Médecine, Aix Marseille Université, 27 Boulevard Jean Moulin, 13385, Marseille Cedex 5, France; Pôle des Maladies Infectieuses, Hôpital La Timone, Assistance Publique-Hôpitaux de Marseille, Marseille, France. Electronic address:

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http://dx.doi.org/10.1016/j.anaerobe.2016.12.001DOI Listing
February 2017

Staphylococcus lugdunensis: An Underreported Pathogen in Osteomyelitis.

J Foot Ankle Surg 2017 Mar - Apr;56(2):412-413. Epub 2017 Jan 7.

Professor of Infectious Disease, Centre de Référence des Infections Ostéo-Articulaires Interrégional Sud-Méditerranée, Service des Maladies Infectieuses, Centre Hospitalo-Universitaire de la Conception, Marseille, France; and Aix-Marseille Université, Faculté de Médecine, Marseille, France.

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http://dx.doi.org/10.1053/j.jfas.2016.10.018DOI Listing
January 2017

Critical Microbiological View of SER-109.

J Infect Dis 2017 01 20;215(1):161-162. Epub 2016 Oct 20.

Aix-Marseille Université, URMITE, IHU Méditerranée-Infection, UM63, CNRS 7278, IRD 198, Inserm U1095, Marseille, France.

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http://dx.doi.org/10.1093/infdis/jiw489DOI Listing
January 2017

Acute polyarthritis in a young patient caused by meningococcal and parvovirus B19 infections: a case report and review of the literature.

J Med Case Rep 2016 Dec 20;10(1):362. Epub 2016 Dec 20.

Service de Maladies Infectieuses Aigues, Pôle Maladies Infectieuses, Assistance Publique Hôpitaux de Marseille, CHU Timone, Institut Hospitalo-Universitaire Méditerranée Infection, 13005, Marseille, France.

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http://dx.doi.org/10.1186/s13256-016-1156-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5175313PMC
December 2016

A Regional Outbreak of Clostridium difficile PCR-Ribotype 027 Infections in Southeastern France from a Single Long-Term Care Facility.

Infect Control Hosp Epidemiol 2016 11 3;37(11):1337-1341. Epub 2016 Aug 3.

1Unité de Recherche sur les Maladies Infectieuses Tropicales et Emergentes,UMR CNRS-7278,IRD189,INSERM U1095,Méditerranée-Infection,Aix-Marseille-Université,Marseille,France.

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http://dx.doi.org/10.1017/ice.2016.164DOI Listing
November 2016

[Culturomics: a method to study human gut microbiota].

Med Sci (Paris) 2016 Nov 23;32(11):923-925. Epub 2016 Dec 23.

Aix-Marseille Université URMITE, IHU Méditerranée-Infection, UM63, CNRS 7278, IRD 198, Inserm 1095, 27, boulevard Jean Moulin, 13385 Marseille Cedex 5, France.

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http://dx.doi.org/10.1051/medsci/20163211004DOI Listing
November 2016

[Fecal microbiota transplantation: indications and perspectives].

Med Sci (Paris) 2016 Nov 23;32(11):991-997. Epub 2016 Dec 23.

Aix-Marseille université URMITE, IHU Méditerranée-Infection, UM63, CNRS 7278, IRD 198, Inserm 1095, 27 Boulevard Jean Moulin, 13385 Marseille Cedex 5, France.

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http://dx.doi.org/10.1051/medsci/20163211015DOI Listing
November 2016

Gut microbiota associated with HIV infection is significantly enriched in bacteria tolerant to oxygen.

BMJ Open Gastroenterol 2016 28;3(1):e000080. Epub 2016 Jul 28.

Faculté de Médecine, URMITE, UMR CNRS 6236-IRD 198, Aix-Marseille Université, Marseille, France; Pôle des Maladies Infectieuses et Tropicales Clinique et Biologique, Fédération de Bactériologie-Hygiène-Virologie, University Hospital Centre Timone, Institut Hospitalo-Universitaire (IHU) Méditerranée Infection, Assistance Publique-Hôpitaux de Marseille, Marseille, France; Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.

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http://dx.doi.org/10.1136/bmjgast-2016-000080DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4985784PMC
August 2016

Gut microbiome and dietary patterns in different Saudi populations and monkeys.

Sci Rep 2016 08 31;6:32191. Epub 2016 Aug 31.

Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes: URMITE CNRS-IRD 198 UMR 6236, Aix Marseille Université, Faculté de Médecine, 27 Bd Jean Moulin, 13385 Marseille, France.

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http://dx.doi.org/10.1038/srep32191DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5006041PMC
August 2016

Melioidosis as a travel-associated infection: Case report and review of the literature.

Travel Med Infect Dis 2015 Sep-Oct;13(5):367-81. Epub 2015 Sep 4.

Aix Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, INSERM 1095, 13005 Marseille, France; Assistance Publique Hôpitaux de Marseille, CHU Timone, Pôle Maladies Infectieuses, Service de Maladies Infectieuses Aigues, Institut Hospitalo-Universitaire Méditerranée Infection, 13005 Marseille, France. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S14778939150014
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http://dx.doi.org/10.1016/j.tmaid.2015.08.007DOI Listing
July 2016

Risungbinella massiliensis sp. nov., a new member of Thermoactinomycetaceae isolated from human gut.

Antonie Van Leeuwenhoek 2016 Jun 17;109(6):773-84. Epub 2016 Mar 17.

Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, UM 63, CNRS 7278, IRD 198, Inserm 1095, Institut Hospitalo-Universitaire Méditerranée-Infection, Faculté de médecine, Aix-Marseille Université, 27 Boulevard Jean Moulin, 13385, Marseille Cedex 05, France.

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http://dx.doi.org/10.1007/s10482-016-0677-6DOI Listing
June 2016

Glycans affect DNA extraction and induce substantial differences in gut metagenomic studies.

Sci Rep 2016 05 18;6:26276. Epub 2016 May 18.

URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095, Aix Marseille Université,13005 Marseille, France.

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http://dx.doi.org/10.1038/srep26276DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4870698PMC
May 2016

Microvirga massiliensis sp. nov., the human commensal with the largest genome.

Microbiologyopen 2016 Apr 8;5(2):307-22. Epub 2016 Jan 8.

Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes, CNRS, UMR 7278 - IRD 198, Faculté de médecine, Aix-Marseille Université, 27 Boulevard Jean Moulin, 13385, Marseille Cedex 05, France.

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http://dx.doi.org/10.1002/mbo3.329DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4831475PMC
April 2016

Microbial Culturomics to Map Halophilic Bacterium in Human Gut: Genome Sequence and Description of Oceanobacillus jeddahense sp. nov.

OMICS 2016 Apr;20(4):248-58

1 Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, CNRS (UMR 7278), IRD (198), INSERM (U1095), AMU (UM63), Institut Hospitalo-Universitaire Méditerranée-Infection, Faculté de Médecine, Aix-Marseille Université , Marseille, Franca.

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http://www.liebertpub.com/doi/10.1089/omi.2016.0004
Publisher Site
http://dx.doi.org/10.1089/omi.2016.0004DOI Listing
April 2016

Deglycosylation of Tropheryma whipplei biofilm and discrepancies between diagnostic results during Whipple's disease progression.

Sci Rep 2016 Mar 30;6:23883. Epub 2016 Mar 30.

Aix Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095, 13005 Marseille, France.

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http://dx.doi.org/10.1038/srep23883DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4812295PMC
March 2016

Classic Whipple's disease diagnosed by (18)F-fluorodeoxyglucose PET.

Lancet Infect Dis 2016 Jan;16(1):130

Aix Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, INSERM 1095, Marseille, France. Electronic address:

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http://dx.doi.org/10.1016/S1473-3099(15)00503-4DOI Listing
January 2016

Extended Perineal Dermatobia hominis Myiasis in a Traveler Returning From South America.

JAMA Dermatol 2015 Dec;151(12):1389-1390

Pôle Infectieux, Institut Hospitalo-Universitaire Méditerranée Infection, Assistance Publique Hôpitaux de Marseille, Centre Hospitalier Universitaire Nord, Marseille, France2Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, Aix Ma.

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http://dx.doi.org/10.1001/jamadermatol.2015.2608DOI Listing
December 2015

Clostridium polynesiense sp. nov., a new member of the human gut microbiota in French Polynesia.

Anaerobe 2015 Dec 17;36:79-87. Epub 2015 Oct 17.

Aix-Marseille Université, URMITE, UM63, CNRS7278, IRD198, Inserm 1095, Faculté de médecine, 27 Boulevard Jean Moulin, 13385, Marseille Cedex 05, France. Electronic address:

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http://dx.doi.org/10.1016/j.anaerobe.2015.10.004DOI Listing
December 2015

From culturomics to taxonomogenomics: A need to change the taxonomy of prokaryotes in clinical microbiology.

Anaerobe 2015 Dec 27;36:73-8. Epub 2015 Oct 27.

Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), UM 63, CNRS 7278, IRD198, Inserm1095, Institut Hospitalo-Universitaire Méditerranée-Infection, Faculté de Médecine, Université de la Méditerranée, Marseille, France. Electronic address:

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http://dx.doi.org/10.1016/j.anaerobe.2015.10.011DOI Listing
December 2015

Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut.

Stand Genomic Sci 2015 29;10:91. Epub 2015 Oct 29.

Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, UM 63, CNRS 7278, L'Institut de Recherche pour le Développement 198, Inserm 1095, Institut Hospitalo-Universitaire Méditerranée-Infection, Faculté de Médecine, Aix-Marseille Université, 27 Boulevard Jean Moulin, 13385 Marseille Cedex 5, France.

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http://link.springer.com/content/pdf/10.1186%2Fs40793-015-00
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http://www.standardsingenomics.com/content/10/1/91
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http://dx.doi.org/10.1186/s40793-015-0081-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4627390PMC
November 2015

Clostridium butyricum Strains and Dysbiosis Linked to Necrotizing Enterocolitis in Preterm Neonates.

Clin Infect Dis 2015 Oct 17;61(7):1107-15. Epub 2015 Jun 17.

Facultés de Médecine et de Pharmacie, Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, UM63, CNRS 7278, IRD 198, INSERM U1095, Aix-Marseille Université

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http://dx.doi.org/10.1093/cid/civ468DOI Listing
October 2015

Non contiguous-finished genome sequence and description of Bacillus jeddahensis sp. nov.

Stand Genomic Sci 2015 1;10:47. Epub 2015 Aug 1.

URMITE, Aix-Marseille Université, Faculté de médecine, Marseille, France ; Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.

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http://dx.doi.org/10.1186/s40793-015-0024-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572673PMC
September 2015

Non-contiguous finished genome sequence and description of Clostridium ihumii sp. nov.

Stand Genomic Sci 2015 19;10:63. Epub 2015 Sep 19.

Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), UM 63, CNRS 7278, IRD 198, Inserm 1095, Institut Hospitalo-Universitaire Méditerranée-Infection, Faculté de médecine, Aix-Marseille Université, 27 Boulevard Jean Moulin, 13385, Marseille, cedex 05 France.

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http://dx.doi.org/10.1186/s40793-015-0025-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4575456PMC
September 2015

Faecal microbiota transplantation as salvage therapy for fulminant Clostridium difficile infections.

Int J Antimicrob Agents 2015 Aug 3;46(2):227-8. Epub 2015 Jun 3.

Aix-Marseille Université, Unité de recherche sur les maladies infectieuses et tropicales émergentes, UM63, CNRS 7278, IRD 198, INSERM 1095, Marseille, France. Electronic address:

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http://dx.doi.org/10.1016/j.ijantimicag.2015.05.002DOI Listing
August 2015

The human gut microbiome, a taxonomic conundrum.

Syst Appl Microbiol 2015 Jun 25;38(4):276-86. Epub 2015 Mar 25.

URMITE, UM63, CNRS7278, IRD198, insermU1095, Institut Hospitalo-Universitaire Méditerranée Infection, Aix-Marseille University, Marseille, France. Electronic address:

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http://dx.doi.org/10.1016/j.syapm.2015.03.004DOI Listing
June 2015

Concentrations of doxycycline in cerebrospinal fluid in Whipple's disease.

Int J Antimicrob Agents 2015 Jun 24;45(6):677-8. Epub 2015 Mar 24.

Pôle des Maladies Infectieuses et Tropicales Clinique et Biologique, Fédération de Bactériologie-Hygiène-Virologie, University Hospital Centre Timone, Institut Hospitalo-Universitaire (IHU) Méditerranée Infection, Assistance Publique-Hôpitaux de Marseille, Marseille, France; Université Aix-Marseille, Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) UM 63 CNRS 7278 IRD 198 INSERM U1095, Facultés de Médecine et de Pharmacie, Marseille, France. Electronic address:

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http://dx.doi.org/10.1016/j.ijantimicag.2015.03.002DOI Listing
June 2015

Sewage workers with low antibody responses may be colonized successively by several Tropheryma whipplei strains.

Int J Infect Dis 2015 Jun 21;35:51-5. Epub 2015 Apr 21.

Aix-Marseille Université, Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) UM63, CNRS 7278, IRD 198, Inserm 1095, 13005 Marseille, France. Electronic address:

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http://dx.doi.org/10.1016/j.ijid.2015.04.009DOI Listing
June 2015

The aerobic activity of metronidazole against anaerobic bacteria.

Int J Antimicrob Agents 2015 May 16;45(5):537-40. Epub 2015 Feb 16.

Aix-Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, INSERM 1095, 13005 Marseille, France. Electronic address:

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http://dx.doi.org/10.1016/j.ijantimicag.2014.12.032DOI Listing
May 2015

Laryngeal tuberculosis diagnosed by stool sample cultures: a case report.

J Med Case Rep 2015 Mar 31;9:74. Epub 2015 Mar 31.

Assistance Publique-Hôpitaux de Marseille, CHU Nord, Pôle Infectieux, Institut Hospitalo-Universitaire Méditerranée Infection, 13015, Marseille, France.

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http://www.jmedicalcasereports.com/content/pdf/s13256-015-05
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http://www.jmedicalcasereports.com/content/9/1/74
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http://dx.doi.org/10.1186/s13256-015-0548-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4381499PMC
March 2015

Relapse of Tropheryma whipplei endocarditis treated by trimethoprim/sulfamethoxazole, cured by hydroxychloroquine plus doxycycline.

Int J Infect Dis 2015 Jan 6;30:17-9. Epub 2014 Nov 6.

Service of Infectious Diseases, Department of Medical Specialties, University Hospitals Geneva, Switzerland.

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http://dx.doi.org/10.1016/j.ijid.2014.11.003DOI Listing
January 2015

Current and past strategies for bacterial culture in clinical microbiology.

Clin Microbiol Rev 2015 Jan;28(1):208-36

Aix Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, INSERM 1095, Marseille, France

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http://dx.doi.org/10.1128/CMR.00110-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4284306PMC
January 2015

The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota.

Clin Microbiol Rev 2015 Jan;28(1):237-64

Aix Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, INSERM 1095, Marseille, France

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http://dx.doi.org/10.1128/CMR.00014-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4284300PMC
January 2015

MALDI-TOF identification of the human Gut microbiome in people with and without diarrhea in Senegal.

PLoS One 2014 1;9(5):e87419. Epub 2014 May 1.

Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) UM63, CNRS 7278, IRD 198, INSERM 1095, Aix-Marseille Université, Marseille, France and Dakar, Senegal.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0087419PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4006720PMC
December 2014

Genome Sequence of Bacillus simplex Strain P558, Isolated from a Human Fecal Sample.

Genome Announc 2014 Dec 11;2(6). Epub 2014 Dec 11.

Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, UM63, CNRS 7278, IRD 198, INSERM U1095, Faculté de Médecine, Aix-Marseille Université, Marseille, France

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http://dx.doi.org/10.1128/genomeA.01241-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4263825PMC
December 2014

Gorilla gorilla gorilla gut: a potential reservoir of pathogenic bacteria as revealed using culturomics and molecular tools.

Sci Rep 2014 Nov 24;4:7174. Epub 2014 Nov 24.

Aix Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095, 13005 Marseille, France.

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http://dx.doi.org/10.1038/srep07174DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4241516PMC
November 2014

Whipple's disease: surprised by the surprise.

Lancet 2014 Sep;384(9949):1184-5

Aix Marseille Université, INSERM 1095, Marseille 13005, France. Electronic address:

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http://dx.doi.org/10.1016/S0140-6736(14)61721-9DOI Listing
September 2014

Tropheryma whipplei and Whipple's disease.

J Infect 2014 Aug 28;69(2):103-12. Epub 2014 May 28.

Aix-Marseille Université, Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) UM63, CNRS 7278, IRD 198, Inserm 1095, 13005 Marseille, France; AP-HM, CHU Timone, Pôle Infectieux, 13005 Marseille, France. Electronic address:

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http://dx.doi.org/10.1016/j.jinf.2014.05.008DOI Listing
August 2014

Culturomics and pyrosequencing evidence of the reduction in gut microbiota diversity in patients with broad-spectrum antibiotics.

Int J Antimicrob Agents 2014 Aug 14;44(2):117-24. Epub 2014 Jun 14.

Aix-Marseille University, Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE; Research Unit on Infectious and Tropical Emerging Diseases) UM 63 CNRS 7278 IRD 198 INSERM U1095, Faculties of Medicine and Pharmacy, Marseille, France; Pôle des Maladies Infectieuses et Tropicales Clinique et Biologique, Fédération de Bactériologie-Hygiène-Virologie, University, Hospital Centre Timone, Institut Hospitalo-Universitaire (IHU) Méditerranée Infection, Assistance Publique-Hôpitaux de Marseille, Marseille, France; Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah 21589, Saudi Arabia. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S09248579140016
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http://dx.doi.org/10.1016/j.ijantimicag.2014.04.020DOI Listing
August 2014

Common subclinical hypothyroidism during Whipple's disease.

BMC Infect Dis 2014 Jul 4;14:370. Epub 2014 Jul 4.

Aix Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, INSERM 1095, Faculté de Médecine, 27 Bd Jean Moulin, 13005 Marseille, France.

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http://dx.doi.org/10.1186/1471-2334-14-370DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4099391PMC
July 2014

Abnormal weight gain and gut microbiota modifications are side effects of long-term doxycycline and hydroxychloroquine treatment.

Antimicrob Agents Chemother 2014 Jun 31;58(6):3342-7. Epub 2014 Mar 31.

Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, Faculté de Médecine et de Pharmacie, CNRS UMR 7278, IRD 198, Aix-Marseille Université, Marseille, France

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http://dx.doi.org/10.1128/AAC.02437-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4068504PMC
June 2014

Non-contiguous finished genome sequence and description of Corynebacterium jeddahense sp. nov.

Stand Genomic Sci 2014 Jun 29;9(3):987-1002. Epub 2014 Apr 29.

Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, Institut Hospitalo-Universitaire Méditerranée-Infection, Faculté de médecine, Aix-Marseille Université, Boulevard Jean Moulin, Marseille cedex, France ; Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdul Aziz University, Jeddah, Saudi Arabia .

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http://dx.doi.org/10.4056/sigs.5561028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149016PMC
June 2014

Non contiguous-finished genome sequence and description of Clostridium jeddahense sp. nov.

Stand Genomic Sci 2014 Jun 1;9(3):1003-19. Epub 2014 May 1.

Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, UMR CNRS 7278 - IRD 198, Institut Hospitalo-Universitaire Méditerranée-Infection, Faculté de médecine, Aix-Marseille Université, France ; Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.

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http://dx.doi.org/10.4056/sigs.5571026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148971PMC
June 2014

Genome sequence and description of Corynebacterium ihumii sp. nov.

Stand Genomic Sci 2014 Jun 15;9(3):1128-43. Epub 2014 Mar 15.

URMITE, UM63, CNRS7278, IRD198, Inserm1095, IHU Méditerranée-Infection, Aix-Marseille Université, Faculté de médecine, France.

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http://dx.doi.org/10.4056/sigs.5149006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149009PMC
June 2014

Genome sequence and description of Bacteroides timonensis sp. nov.

Stand Genomic Sci 2014 Jun 15;9(3):1181-97. Epub 2014 Mar 15.

Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, Institut Hospitalo-Universitaire Méditerranée-Infection, Faculté de médecine, Aix-Marseille Université, Marseille, France.

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http://dx.doi.org/10.4056/sigs.5389564DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148978PMC
June 2014

Non-contiguous finished genome sequence and description of Alistipes ihumii sp. nov.

Stand Genomic Sci 2014 Jun 15;9(3):1221-35. Epub 2014 Feb 15.

Aix-Marseille Université, URMITE, UM63, Faculté de médecine, Marseille, France.

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http://dx.doi.org/10.4056/sigs.4698398DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149002PMC
June 2014

Non-contiguous finished genome sequence and description of Kurthia senegalensis sp. nov.

Stand Genomic Sci 2014 Jun 20;9(3):1319-30. Epub 2014 Feb 20.

Aix Marseille Université, URMITE, Faculté de médecine, Aix-Marseille Université, Marseille, France.

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http://dx.doi.org/10.4056/sigs.5078947DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148981PMC
June 2014

Non-contiguous finished genome sequence and description of Holdemania massiliensis sp. nov.

Stand Genomic Sci 2013 Dec 15;9(2):395-409. Epub 2013 Dec 15.

URMITE, CNRS 7278, IRD 198, Inserm U1095, Aix-Marseille Université, Faculté de Médecine, Marseille, France.

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http://dx.doi.org/10.4056/sigs.4628316DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4062643PMC
December 2013