Jean Y H Yang

Jean Y H Yang

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Jean Y H Yang

Jean Y H Yang

Publications by authors named "Jean Y H Yang"

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Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis.

BMC Bioinformatics 2019 Dec 24;20(Suppl 19):660. Epub 2019 Dec 24.

Charles Perkins Centre, School of Mathematics and Statistics, Faculty of Science, The University of Sydney, Sydney, NSW 2006, Australia.

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http://dx.doi.org/10.1186/s12859-019-3179-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6929272PMC
December 2019

scDC: single cell differential composition analysis.

BMC Bioinformatics 2019 Dec 24;20(Suppl 19):721. Epub 2019 Dec 24.

School of Mathematics and Statistics, The University of Sydney, Sydney, NSW 2006, Australia.

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http://dx.doi.org/10.1186/s12859-019-3211-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6929335PMC
December 2019

Analysis of the Whole-Exome Sequencing of Tumor and Circulating Tumor DNA in Metastatic Melanoma.

Cancers (Basel) 2019 Nov 29;11(12). Epub 2019 Nov 29.

Department of Biomedical Sciences, Faculty of Medicine and Health Sciences, Macquarie University, Sydney, NSW 2109, Australia.

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http://dx.doi.org/10.3390/cancers11121905DOI Listing
November 2019

Evaluating stably expressed genes in single cells.

Gigascience 2019 09;8(9)

School of Mathematics and Statistics, University of Sydney, Sydney, NSW 2006, Australia.

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http://dx.doi.org/10.1093/gigascience/giz106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6748759PMC
September 2019

Multi-omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency.

Cell Syst 2019 May 8;8(5):427-445.e10. Epub 2019 May 8.

Epigenetics & Stem Cell Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC 27709, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S24054712193011
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http://dx.doi.org/10.1016/j.cels.2019.03.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6544180PMC
May 2019

DCARS: differential correlation across ranked samples.

Bioinformatics 2019 03;35(5):823-829

School of Mathematics and Statistics, University of Sydney, Sydney, NSW, Australia.

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http://dx.doi.org/10.1093/bioinformatics/bty698DOI Listing
March 2019

Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development.

BMC Genomics 2017 Dec 4;18(1):946. Epub 2017 Dec 4.

Key Laboratory of Systems Biomedicine (Ministry of Education) and Collaborative Innovation Center of Systems Biomedicine, Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China.

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http://dx.doi.org/10.1186/s12864-017-4342-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5715535PMC
December 2017

Quantitative Performance Evaluator for Proteomics (QPEP): Web-based Application for Reproducible Evaluation of Proteomics Preprocessing Methods.

J Proteome Res 2017 07 5;16(7):2359-2369. Epub 2017 Jun 5.

School of Mathematics and Statistics, University of Sydney , Sydney, New South Wales 2006, Australia.

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http://dx.doi.org/10.1021/acs.jproteome.6b00882DOI Listing
July 2017

Integrated single cell data analysis reveals cell specific networks and novel coactivation markers.

BMC Syst Biol 2016 Dec 5;10(Suppl 5):127. Epub 2016 Dec 5.

School of Mathematics and Statistics, The University of Sydney, Eastern Avenue, Camperdown, NSW, 2006, Australia.

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http://dx.doi.org/10.1186/s12918-016-0370-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5249008PMC
December 2016

Differential distribution improves gene selection stability and has competitive classification performance for patient survival.

Nucleic Acids Res 2016 07 17;44(13):e119. Epub 2016 May 17.

School of Mathematics and Statistics, University of Sydney, NSW 2006, Australia ARC Centre of Excellence for Mathematical & Statistical Frontiers, University of Melbourne, Parkville VIC 3010, Australia

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http://dx.doi.org/10.1093/nar/gkw444DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5291264PMC
July 2016

Analysis of Post-Liver Transplant Hepatitis C Virus Recurrence Using Serial Cluster of Differentiation Antibody Microarrays.

Transplantation 2015 Sep;99(9):e120-6

1 A.W. Morrow Gastroenterology and Liver Centre, Royal Prince Alfred Hospital, Camperdown, NSW, Australia. 2 Centenary Institute, Sydney, NSW, Australia. 3 Medsaic Pty Ltd, Suite 145, Level 1, National Innovation Centre, Australian Technology Park, Garden Street, Eveleigh, Australia. 4 School of Molecular and Microbial Biosciences, The University of Sydney, NSW, Australia. 5 Victorian Infectious Diseases Reference Laboratory, Melbourne, Australia. 6 Collaborative Transplantation Research Group, Bosch Institute, The University of Sydney, NSW, Australia. 7 School of Mathematics and Statistics, The University of Sydney, NSW, Australia.

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http://dx.doi.org/10.1097/TP.0000000000000617DOI Listing
September 2015

ClassifyR: an R package for performance assessment of classification with applications to transcriptomics.

Bioinformatics 2015 Jun 1;31(11):1851-3. Epub 2015 Feb 1.

School of Mathematics and Statistics, University of Sydney, New South Wales, Australia and Melanoma Institute Australia, Sydney, New South Wales, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btv066DOI Listing
June 2015