Je-Gun Joung

Je-Gun Joung

UNVERIFIED PROFILE

Are you Je-Gun Joung?   Register this Author

Register author
Je-Gun Joung

Je-Gun Joung

Publications by authors named "Je-Gun Joung"

Are you Je-Gun Joung?   Register this Author

60Publications

986Reads

42Profile Views

Paired whole exome and transcriptome analyses for the Immunogenomic changes during concurrent chemoradiotherapy in esophageal squamous cell carcinoma.

J Immunother Cancer 2019 May 16;7(1):128. Epub 2019 May 16.

Division of Hematology-Oncology, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, 81 Irwon-ro, Gangnam-Gu, Seoul, 60351, Republic of Korea.

View Article

Download full-text PDF

Source
https://jitc.biomedcentral.com/articles/10.1186/s40425-019-0
Publisher Site
http://dx.doi.org/10.1186/s40425-019-0609-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6524245PMC
May 2019

Correlations between metabolic texture features, genetic heterogeneity, and mutation burden in patients with lung cancer.

Eur J Nucl Med Mol Imaging 2019 02 25;46(2):446-454. Epub 2018 Aug 25.

Department of Health Sciences and Technology, SAIHST, Sungkyunkwan University, Seoul, Republic of Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00259-018-4138-5DOI Listing
February 2019

Biomarkers Associated with Tumor Heterogeneity in Prostate Cancer.

Transl Oncol 2019 Jan 25;12(1):43-48. Epub 2018 Sep 25.

Center for Health Promotion, Samsung Medical Center, Seoul, Republic of Korea. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.tranon.2018.09.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6161410PMC
January 2019

Clinical Relevance of Genomic Changes in Recurrent Pediatric Solid Tumors.

Transl Oncol 2018 Dec 11;11(6):1390-1397. Epub 2018 Sep 11.

Samsung Genome Institute, Samsung Medical Center, 81 Irwon-ro, Gangnam-gu, Seoul 06351, Republic of Korea; Department of Health Science and Technology, Samsung Advanced Institute for Health Sciences and Technology, Sungkyunkwan University, 81 Irwon-ro, Gangnam-gu, Seoul 06351, Republic of Korea; Department of Molecular Cell Biology, Sungkyunkwan University School of Medicine, 81 Irwon-ro, Gangnam-gu, Seoul 06351, Republic of Korea. Electronic address:

View Article

Download full-text PDF

Source
https://linkinghub.elsevier.com/retrieve/pii/S19365233183031
Publisher Site
http://dx.doi.org/10.1016/j.tranon.2018.08.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6134157PMC
December 2018

Molecular Characterization of Colorectal Signet-Ring Cell Carcinoma Using Whole-Exome and RNA Sequencing.

Transl Oncol 2018 Aug 7;11(4):836-844. Epub 2018 May 7.

Department of Health Sciences and Technology, SAIHST, Sungkyunkwan University, Seoul, Republic of Korea; Department of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea; Department of Medical Device Management & Research, SAIHST, Sungkyunkwan University, Seoul, Republic of Korea. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.tranon.2018.04.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6051939PMC
August 2018

Genomic alterations of ground-glass nodular lung adenocarcinoma.

Sci Rep 2018 May 16;8(1):7691. Epub 2018 May 16.

Division of Pulmonary and Critical Care Medicine, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41598-018-25800-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5955945PMC
May 2018

Tumor Heterogeneity Predicts Metastatic Potential in Colorectal Cancer.

Clin Cancer Res 2017 Dec 22;23(23):7209-7216. Epub 2017 Sep 22.

Department of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.

View Article

Download full-text PDF

Source
http://clincancerres.aacrjournals.org/lookup/doi/10.1158/107
Publisher Site
http://dx.doi.org/10.1158/1078-0432.CCR-17-0306DOI Listing
December 2017

Regulation of PLK1 through competition between hnRNPK, miR-149-3p and miR-193b-5p.

Cell Death Differ 2017 11 14;24(11):1861-1871. Epub 2017 Jul 14.

Department of Health Sciences and Technology, Samsung Advanced Institute for Health Sciences and Technology, Sungkyunkwan University, Seoul, Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/cdd.2017.106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5635212PMC
November 2017

Exome and transcriptome sequencing identifies loss of in metastatic colorectal cancers.

Cancer Manag Res 2017 8;9:581-589. Epub 2017 Nov 8.

Department of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine.

View Article

Download full-text PDF

Source
https://www.dovepress.com/exome-and-transcriptome-sequencing
Publisher Site
http://dx.doi.org/10.2147/CMAR.S149002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5685135PMC
November 2017

RNA-seq Reveals Transcriptomic Differences in Inflamed and Noninflamed Intestinal Mucosa of Crohn's Disease Patients Compared with Normal Mucosa of Healthy Controls.

Inflamm Bowel Dis 2017 07;23(7):1098-1108

*Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea;†Laboratory of Translational Genomics, Samsung Genome Institute, Samsung Medical Center, Seoul, Korea;‡Department of Internal Medicine, Samsung Biomedical Research Institute, Samsung Medical Center, Seoul, Korea;§Korea University Ansan Hospital, Korea University College of Medicine, Ansan, Korea;‖Department of Internal Medicine, Yonsei University School of Medicine, Seoul, Korea;¶Department of Internal Medicine, Seoul National University College of Medicine, Seoul, Korea; and**Department of Internal Medicine, Inje University College of Medicine, Seoul, Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1097/MIB.0000000000001066DOI Listing
July 2017

Nonlinear tumor evolution from dysplastic nodules to hepatocellular carcinoma.

Oncotarget 2017 Jan;8(2):2076-2082

Samsung Genome Institute, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.18632/oncotarget.10502DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5356781PMC
January 2017

Molecular Evolution Patterns in Metastatic Lymph Nodes Reflect the Differential Treatment Response of Advanced Primary Lung Cancer.

Cancer Res 2016 11 13;76(22):6568-6576. Epub 2016 Sep 13.

Samsung Genome Institute, Samsung Medical Center, Seoul, Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1158/0008-5472.CAN-16-0873DOI Listing
November 2016

Paradoxical delay of senescence upon depletion of BRCA2 in telomerase-deficient worms.

FEBS Open Bio 2016 Oct 7;6(10):1016-1024. Epub 2016 Sep 7.

Department of Biological Sciences & Institute of Molecular Biology and Genetics (IMBG) Seoul National University Gwanak-Gu Seoul Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/2211-5463.12109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5055038PMC
October 2016

Comprehensive genomic profiling of IgM multiple myeloma identifies IRF4 as a prognostic marker.

Oncotarget 2016 Jul;7(30):47127-47133

Division of Hematology-Oncology, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.18632/oncotarget.9478DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5216929PMC
July 2016

Genome-wide screen identifies novel machineries required for both ciliogenesis and cell cycle arrest upon serum starvation.

Biochim Biophys Acta 2016 Jun 28;1863(6 Pt A):1307-18. Epub 2016 Mar 28.

Department of Health Sciences and Technology, SAIHST, Sungkyunkwan University, #81 Irwon-Ro Gangnam-Gu, Seoul 06351, Republic of Korea; SGI, Samsung Medical Center, #81 Irwon-Ro Gangnam-Gu, Seoul 06351, Republic of Korea. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bbamcr.2016.03.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4886714PMC
June 2016

Deciphering intratumor heterogeneity using cancer genome analysis.

Hum Genet 2016 06 28;135(6):635-42. Epub 2016 Apr 28.

Samsung Genome Institute, Samsung Medical Center, Seoul, Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00439-016-1670-xDOI Listing
June 2016

Neurofibromatosis 2 (NF2) controls the invasiveness of glioblastoma through YAP-dependent expression of CYR61/CCN1 and miR-296-3p.

Biochim Biophys Acta 2016 Apr 24;1859(4):599-611. Epub 2016 Feb 24.

Department of Health Sciences and Technology, Samsung Advanced Institute for Health Sciences and Technology, Sungkyunkwan University, Seoul, Republic of Korea; Samsung Biomedical Research Institute, Institute for Future Medicine, Samsung Medical Center, Seoul, Republic of Korea. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bbagrm.2016.02.010DOI Listing
April 2016

Predicting multi-class responses to preoperative chemoradiotherapy in rectal cancer patients.

Radiat Oncol 2016 Mar 22;11:50. Epub 2016 Mar 22.

Department of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, 135-710, Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13014-016-0623-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4804643PMC
March 2016

The use of FNA samples for whole-exome sequencing and detection of somatic mutations in breast cancer surgical specimens.

Cancer Cytopathol 2015 Nov 11;123(11):669-77. Epub 2015 Aug 11.

Department of Surgery, Seoul National University College of Medicine, Seoul, Republic of Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/cncy.21599DOI Listing
November 2015

Overexpression of microRNA-95-3p suppresses brain metastasis of lung adenocarcinoma through downregulation of cyclin D1.

Oncotarget 2015 Aug;6(24):20434-48

Department of Health Sciences and Technology, Samsung Advanced Institute for Health Sciences and Technology, Sungkyunkwan University, Seoul, Korea.

View Article

Download full-text PDF

Source
http://www.oncotarget.com/fulltext/3886
Publisher Site
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4653016PMC
http://dx.doi.org/10.18632/oncotarget.3886DOI Listing
August 2015

Deregulation of Retinaldehyde Dehydrogenase 2 Leads to Defective Angiogenic Function of Endothelial Colony-Forming Cells in Pediatric Moyamoya Disease.

Arterioscler Thromb Vasc Biol 2015 Jul 28;35(7):1670-7. Epub 2015 May 28.

From the Department of Anatomy (J.Y.L.), Division of Pediatric Neurosurgery, Seoul National University Children's Hospital (J.Y.L., Y.J.M., S.-A.C., K.-C.W., J.W.H., J.H.P., S.-K.K.), and Department of Neurosurgery (H.S.K., J.E.K.), Seoul National University College of Medicine, Seoul, Korea; Samsung Genome Institute, Samsung Medical Center, Seoul, Korea (H.-O.L., J.-G.J., W.-Y.P.); College of Pharmacy, Sunchon National University, Jeonnam, Korea (A.-K.P.); and Department of Molecular Cell Biology, Sungkyunkwan University School of Medicine, Suwon, Korea (H.-O.L., W.-Y.P.).

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1161/ATVBAHA.115.305363DOI Listing
July 2015

Patient-derived xenografts from non-small cell lung cancer brain metastases are valuable translational platforms for the development of personalized targeted therapy.

Clin Cancer Res 2015 Mar 30;21(5):1172-82. Epub 2014 Dec 30.

Department of Neurosurgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea. Samsung Advanced Institute for Health Sciences and Technology (SAIHST), Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea. Samsung Biomedical Research Institute, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea.

View Article

Download full-text PDF

Source
http://clincancerres.aacrjournals.org/content/early/2015/02/
Web Search
http://clincancerres.aacrjournals.org/content/early/2014/12/
Web Search
http://clincancerres.aacrjournals.org/cgi/doi/10.1158/1078-0
Publisher Site
http://dx.doi.org/10.1158/1078-0432.CCR-14-1589DOI Listing
March 2015

Characteristic molecular vibrations of adenosine receptor ligands.

FEBS Lett 2015 Feb 23;589(4):548-52. Epub 2015 Jan 23.

Department of Pharmacology, Inje University College of Medicine, Busan 614-735, Republic of Korea. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.febslet.2015.01.024DOI Listing
February 2015

Knowledge boosting: a graph-based integration approach with multi-omics data and genomic knowledge for cancer clinical outcome prediction.

J Am Med Inform Assoc 2015 Jan 7;22(1):109-20. Epub 2014 Jul 7.

Division of Biomedical Informatics, Seoul National University Biomedical Informatics (SNUBI), Seoul National University College of Medicine, Seoul, Korea Systems Biomedical Informatics Research Center, Seoul National University, Seoul, Korea.

View Article

Download full-text PDF

Source
http://jamia.oxfordjournals.org/content/jaminfo/22/1/109.ful
Web Search
http://jamia.oxfordjournals.org/cgi/doi/10.1136/amiajnl-2013
Publisher Site
http://dx.doi.org/10.1136/amiajnl-2013-002481DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4433357PMC
January 2015

Extracting coordinated patterns of DNA methylation and gene expression in ovarian cancer.

J Am Med Inform Assoc 2013 Jul-Aug;20(4):637-42. Epub 2013 Apr 18.

Division of Biomedical Informatics, Seoul National University Biomedical Informatics (SNUBI), Seoul, Republic of Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1136/amiajnl-2012-001571DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3721174PMC
September 2013

A probabilistic coevolutionary biclustering algorithm for discovering coherent patterns in gene expression dataset.

BMC Bioinformatics 2012 13;13 Suppl 17:S12. Epub 2012 Dec 13.

Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, 151-742, Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-13-S17-S12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3521386PMC
May 2013

Comprehensive evaluation of matrix factorization methods for the analysis of DNA microarray gene expression data.

BMC Bioinformatics 2011 30;12 Suppl 13:S8. Epub 2011 Nov 30.

Seoul National University Biomedical Informatics, Systems Biomedical Informatics Research Center, and Interdisciplinary Program of Medical Informatics Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul 110799, Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-12-S13-S8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3278848PMC
August 2012

Transcriptome profiling and methyl homeostasis of an Arabidopsis mutant deficient in S-adenosylhomocysteine hydrolase1 (SAHH1).

Plant Mol Biol 2012 Jul 4;79(4-5):315-31. Epub 2012 May 4.

Plant Biotechnology Institute, National Research Council of Canada (NRC), 110 Gymnasium Place, Saskatoon, SK, S7N 0W9, Canada.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s11103-012-9914-1DOI Listing
July 2012

Extracting regulatory modules from gene expression data by sequential pattern mining.

BMC Genomics 2011 Nov 30;12 Suppl 3:S5. Epub 2011 Nov 30.

Seoul National University Biomedical Informatics, Seoul National University College of Medicine, Seoul 110799, Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-12-S3-S5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3333188PMC
November 2011

High-throughput illumina strand-specific RNA sequencing library preparation.

Cold Spring Harb Protoc 2011 Aug 1;2011(8):940-9. Epub 2011 Aug 1.

Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853, USA.

View Article

Download full-text PDF

Source
http://www.epigenome.cuhk.edu.hk/pic/paper/2011_CSHP.pdf
Web Search
http://www.cshprotocols.org/cgi/doi/10.1101/pdb.prot5652
Publisher Site
http://dx.doi.org/10.1101/pdb.prot5652DOI Listing
August 2011

Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics.

Nucleic Acids Res 2011 Jan 21;39(Database issue):D1156-63. Epub 2010 Oct 21.

Boyce Thompson Institute for Plant Research, Cornell University, USDA Robert W Holley Center for Agriculture and Health, Ithaca, NY 14853, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkq991DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013811PMC
January 2011

Interdependence of threonine, methionine and isoleucine metabolism in plants: accumulation and transcriptional regulation under abiotic stress.

Amino Acids 2010 Oct 26;39(4):933-47. Epub 2010 Feb 26.

Boyce Thompson Institute for Plant Research, Ithaca, NY 14853, USA.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/s00726-010-0505-7
Publisher Site
http://dx.doi.org/10.1007/s00726-010-0505-7DOI Listing
October 2010

Plant MetGenMAP: an integrative analysis system for plant systems biology.

Plant Physiol 2009 Dec 9;151(4):1758-68. Epub 2009 Oct 9.

Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, New York 14853, USA.

View Article

Download full-text PDF

Source
http://www.plantphysiol.org/cgi/doi/10.1104/pp.109.145169
Publisher Site
http://dx.doi.org/10.1104/pp.109.145169DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2786002PMC
December 2009

Identification of cell cycle-related regulatory motifs using a kernel canonical correlation analysis.

BMC Genomics 2009 Dec 3;10 Suppl 3:S29. Epub 2009 Dec 3.

Graduate Program in Bioinformatics, Seoul National University, Seoul 151-744, Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-10-S3-S29DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2788382PMC
December 2009

Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model.

Bioinformatics 2009 Feb 4;25(3):387-93. Epub 2008 Dec 4.

Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btn626DOI Listing
February 2009

Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information.

BMC Bioinformatics 2009 Jan 30;10 Suppl 1:S34. Epub 2009 Jan 30.

Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853, USA.

View Article

Download full-text PDF

Source
http://www.biomedcentral.com/1471-2105/10/S1/S34
Publisher Site
http://dx.doi.org/10.1186/1471-2105-10-S1-S34DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2648752PMC
January 2009

Small RNAs in tomato fruit and leaf development.

Biochim Biophys Acta 2008 Feb 3;1779(2):99-107. Epub 2007 Dec 3.

Department of Plant Cellular and Molecular Biology, Ohio State University, Columbus, Ohio 43210, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bbagrm.2007.09.003DOI Listing
February 2008

WITHDRAWN: Small RNAs in tomato fruit and leaf development.

Biochim Biophys Acta 2007 Oct 5. Epub 2007 Oct 5.

Department of Plant Cellular and Molecular Biology and Plant Biotechnology Center, Ohio State University, Columbus, OH 43210, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bbaexp.2007.09.002DOI Listing
October 2007

Discovery of microRNA-mRNA modules via population-based probabilistic learning.

Bioinformatics 2007 May 9;23(9):1141-7. Epub 2007 Mar 9.

Center for Bioinformation Technology, Seoul National University, Seoul, Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btm045DOI Listing
May 2007

Identification of regulatory modules by co-clustering latent variable models: stem cell differentiation.

Bioinformatics 2006 Aug;22(16):2005-11

Center for Bioinformation Technology, Institute of Molecular Biology and Genetics, Seoul National University, Seoul 151-742, Republic of Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btl343DOI Listing
August 2006

Protein sequence-based risk classification for human papillomaviruses.

Comput Biol Med 2006 Jun 3;36(6):656-67. Epub 2005 Aug 3.

Graduate Program in Bioinformatics, Seoul National University, Seoul 151-742, Republic of Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.compbiomed.2004.04.007DOI Listing
June 2006

Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks.

BMC Bioinformatics 2006 Jun 6;7:284. Epub 2006 Jun 6.

Department of Pharmacology, Inje University College of Medicine, Busan, 614-735, Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-7-284DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1534063PMC
June 2006