Jaume Bonet, PhD - Ecole Polytechnique Fédérale de Lausanne - Post-doc

Jaume Bonet

PhD

Ecole Polytechnique Fédérale de Lausanne

Post-doc

Lausanne, Vaud | Switzerland

Jaume Bonet, PhD - Ecole Polytechnique Fédérale de Lausanne - Post-doc

Jaume Bonet

PhD

Introduction

Primary Affiliation: Ecole Polytechnique Fédérale de Lausanne - Lausanne, Vaud , Switzerland

Publications

21Publications

603Reads

1Profile Views

201PubMed Central Citations

Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.

Nat Commun 2016 10 10;7:13205. Epub 2016 Oct 10.

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http://dx.doi.org/10.1038/ncomms13205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5062501PMC
October 2016
137 Reads
10.742 Impact Factor

Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.

Nat Commun 2016 08 23;7:12460. Epub 2016 Aug 23.

Sage Bionetworks, Seattle, Washington 98115, USA.

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http://dx.doi.org/10.1038/ncomms12460DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4996969PMC
August 2016
117 Reads
12 Citations
10.742 Impact Factor

ADP-ribose-derived nuclear ATP synthesis by NUDIX5 is required for chromatin remodeling.

Science 2016 Jun;352(6290):1221-5

Centre de Regulació Genòmica (CRG), Barcelona Institute for Science and Technology, Barcelona E-09003, Spain. Universitat Pompeu Fabra, Barcelona E-08003, Spain.

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http://dx.doi.org/10.1126/science.aad9335DOI Listing
June 2016
23 Reads
20 Citations
31.480 Impact Factor

InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research.

Biochem Soc Trans 2016 06;44(3):917-24

Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth SY23 3DA, U.K.

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http://www.biochemsoctrans.org/content/44/3/917.full.pdf
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http://dx.doi.org/10.1042/BST20150001DOI Listing
June 2016
9 Reads
3.194 Impact Factor

On the use of knowledge-based potentials for the evaluation of models of protein-protein, protein-DNA, and protein-RNA interactions.

Adv Protein Chem Struct Biol 2014 ;94:77-120

Structural Bioinformatics Lab. (GRIB), Departament de Ciѐncies Experimentals i de la Salut, Universitat Pompeu Fabra, Barcelona, Catalunya, Spain. Electronic address:

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http://dx.doi.org/10.1016/B978-0-12-800168-4.00004-4DOI Listing
April 2015
16 Reads
3 Citations
3.040 Impact Factor

Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design.

Bioinformatics 2014 Jul 6;30(13):1935-6. Epub 2014 Mar 6.

Structural Bioinformatics Lab (GRIB), Universitat Pompeu Fabra, Barcelona, Catalonia 08003, Spain, Department of Structure of Macromolecules, CNB-CSIC, Cantoblanco, 28049 Madrid, Spain and Institute of Biological, Environmental and Rural Science, Aberystwyth University, Aberystwyth, SY23 3DA Ceredigion, UK.

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http://dx.doi.org/10.1093/bioinformatics/btu129DOI Listing
July 2014
5 Reads
5 Citations
4.981 Impact Factor

Elongation of the C-terminal domain of an anti-amyloid β single-chain variable fragment increases its thermodynamic stability and decreases its aggregation tendency.

MAbs 2013 Sep-Oct;5(5):678-89. Epub 2013 Jun 19.

Protein Folding and Stability Group; Departament de Bioquímica i Biologia Molecular; Unitat de Biociències; Universitat Autònoma de Barcelona; Barcelona, Spain.

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http://dx.doi.org/10.4161/mabs.25382DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3851221PMC
May 2014
9 Reads
7 Citations
4.560 Impact Factor

ArchDB 2014: structural classification of loops in proteins.

Nucleic Acids Res 2014 Jan 21;42(Database issue):D315-9. Epub 2013 Nov 21.

Structural Bioinformatics Lab (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona Research Park of Biomedicine (PRBB), Barcelona, Catalonia, 08950, Spain and Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, SY23 3DA Aberystwyth, Ceredigion, UK.

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http://dx.doi.org/10.1093/nar/gkt1189DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964960PMC
January 2014
21 Reads
12 Citations
9.112 Impact Factor

iLoops: a protein-protein interaction prediction server based on structural features.

Bioinformatics 2013 Sep 9;29(18):2360-2. Epub 2013 Jul 9.

Structural Bioinformatics Laboratory, Universitat Pompeu Fabra, 08003 Barcelona, Spain.

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http://dx.doi.org/10.1093/bioinformatics/btt401DOI Listing
September 2013
19 Reads
5 Citations
4.981 Impact Factor

Understanding protein-protein interactions using local structural features.

J Mol Biol 2013 Apr 23;425(7):1210-24. Epub 2013 Jan 23.

Structural Bioinformatics Group (GRIB-IMIM), Departament de Ciències Experimentals i de la Salut, Universitat Pompeu Fabra, C/Dr. Aiguader 88, 08003 Barcelona, Catalonia, Spain.

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http://dx.doi.org/10.1016/j.jmb.2013.01.014DOI Listing
April 2013
4 Reads
12 Citations
4.333 Impact Factor

Networks of ProteinProtein Interactions: From Uncertainty to Molecular Details.

Mol Inform 2012 May 30;31(5):342-62. Epub 2012 Apr 30.

Structural Bioinformatics Group, GRIB-IMIM, Universitat Pompeu Fabra, Barcelona Research Park of Biomedicine (PRBB), Catalonia, Spain.

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http://dx.doi.org/10.1002/minf.201200005DOI Listing
May 2012
10 Reads
3 Citations
2.013 Impact Factor

Prediction of a new class of RNA recognition motif.

J Mol Model 2011 Aug 17;17(8):1863-75. Epub 2010 Nov 17.

Departament de Bioquímica i Biologia Molecular, Unitat de Biociències, Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Spain.

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http://dx.doi.org/10.1007/s00894-010-0888-0DOI Listing
August 2011
44 Reads
1 Citation

Multivalent antibodies: when design surpasses evolution.

Trends Biotechnol 2010 Jul 4;28(7):355-62. Epub 2010 May 4.

Hospital Universitario Puerta de Hierro, 28222 Majadahonda, Madrid, Spain.

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http://dx.doi.org/10.1016/j.tibtech.2010.03.007DOI Listing
July 2010
41 Reads
31 Citations
11.960 Impact Factor

Characterization of protein hubs by inferring interacting motifs from protein interactions.

PLoS Comput Biol 2007 Sep 30;3(9):1761-71. Epub 2007 Jul 30.

Structural Bioinformatics Lab (GRIB), Universitat Pompeu Fabra-IMIM, Barcelona Research Park of Biomedicine (PRBB), Barcelona, Catalonia, Spain.

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http://dx.doi.org/10.1371/journal.pcbi.0030178DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1976338PMC
September 2007
3 Reads
16 Citations

The role of residue stability in transient protein-protein interactions involved in enzymatic phosphate hydrolysis. A computational study.

Proteins 2006 Apr;63(1):65-77

Computational Biochemistry and Biophysics Laboratory, Research Group on Biomedical Informatics (GRIB), IMIM/UPF, Barcelona, Spain.

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http://dx.doi.org/10.1002/prot.20791DOI Listing
April 2006
1 Read
5 Citations
2.630 Impact Factor

Top co-authors

Baldo Oliva
Baldo Oliva

Universitat Pompeu Fabra

15
Joan Planas-Iglesias
Joan Planas-Iglesias

Universitat Pompeu Fabra

7
Baldomero Oliva
Baldomero Oliva

Laboratory of Structural Bioinformatics (GRIB)

5
Luis Alvarez-Vallina
Luis Alvarez-Vallina

Hospital Universitario Puerta de Hierro

3
Oriol Fornes
Oriol Fornes

Universitat Pompeu Fabra

3
Emre Guney
Emre Guney

Universitat Pompeu Fabra

3
Daniel Poglayen
Daniel Poglayen

Universitat Pompeu Fabra

3
Angel M Cuesta
Angel M Cuesta

Hospital Universitario Puerta de Hierro

3