Jasper Koehorst

Jasper Koehorst

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Jasper Koehorst

Jasper Koehorst

Publications by authors named "Jasper Koehorst"

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Organohalide-respiring Desulfoluna species isolated from marine environments.

ISME J 2020 Mar 2;14(3):815-827. Epub 2020 Jan 2.

Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands.

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http://dx.doi.org/10.1038/s41396-019-0573-yDOI Listing
March 2020

Metabolic shift induced by synthetic co-cultivation promotes high yield of chain elongated acids from syngas.

Sci Rep 2019 Dec 2;9(1):18081. Epub 2019 Dec 2.

Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE, Wageningen, the Netherlands.

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http://dx.doi.org/10.1038/s41598-019-54445-yDOI Listing
December 2019

The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation.

Sci Data 2019 11 4;6(1):254. Epub 2019 Nov 4.

Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen, 6708 WE, The Netherlands.

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http://dx.doi.org/10.1038/s41597-019-0263-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6828702PMC
November 2019

Diversity of tryptophan halogenases in sponges of the genus Aplysina.

FEMS Microbiol Ecol 2019 Aug;95(8)

Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands.

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https://academic.oup.com/femsec/article/doi/10.1093/femsec/f
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http://dx.doi.org/10.1093/femsec/fiz108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6644159PMC
August 2019

SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles.

Bioinformatics 2018 04;34(8):1401-1403

Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen 6708 WE, The Netherlands.

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http://dx.doi.org/10.1093/bioinformatics/btx767DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5905645PMC
April 2018

Reverse Methanogenesis and Respiration in Methanotrophic Archaea.

Archaea 2017 5;2017:1654237. Epub 2017 Jan 5.

Laboratory of Microbiology, Wageningen University, Stippeneng 4, 6708 WE Wageningen, Netherlands; Soehngen Institute of Anaerobic Microbiology, Heyendaalseweg 135, 6525 AJ Nijmegen, Netherlands; Centre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal.

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http://dx.doi.org/10.1155/2017/1654237DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5244752PMC
December 2017

Persistence of Functional Protein Domains in Mycoplasma Species and their Role in Host Specificity and Synthetic Minimal Life.

Front Cell Infect Microbiol 2017 7;7:31. Epub 2017 Feb 7.

Laboratory of Systems and Synthetic Biology, Department of Agrotechnology and Food Sciences, Wageningen University and Research Wageningen, Netherlands.

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http://dx.doi.org/10.3389/fcimb.2017.00031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5293770PMC
December 2017

Concurrent Haloalkanoate Degradation and Chlorate Reduction by Pseudomonas chloritidismutans AW-1.

Appl Environ Microbiol 2017 06 31;83(12). Epub 2017 May 31.

Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands

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http://dx.doi.org/10.1128/AEM.00325-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5452809PMC
June 2017

Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data.

Sci Rep 2016 12 6;6:38699. Epub 2016 Dec 6.

Wageningen University, Laboratory of Systems and Synthetic Biology, Wageningen, 6708 WE, The Netherlands.

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http://dx.doi.org/10.1038/srep38699DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5138606PMC
December 2016

Genome and proteome analysis of Pseudomonas chloritidismutans AW-1 that grows on n-decane with chlorate or oxygen as electron acceptor.

Environ Microbiol 2016 10 5;18(10):3247-3257. Epub 2015 Jun 5.

Laboratory of Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, Wageningen, 6703 HB, The Netherlands.

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http://dx.doi.org/10.1111/1462-2920.12880DOI Listing
October 2016

Complete genome sequence of thermophilic Bacillus smithii type strain DSM 4216(T).

Stand Genomic Sci 2016 24;11(1):52. Epub 2016 Aug 24.

Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB Wageningen, The Netherlands ; Corbion, Arkelsedijk 46, 4206 AC Gorinchem, The Netherlands.

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http://dx.doi.org/10.1186/s40793-016-0172-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4995803PMC
August 2016

Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View.

PLoS One 2015 14;10(9):e0137908. Epub 2015 Sep 14.

Laboratory of Systems and Synthetic Biology, Wageningen University and Research Centre, Wageningen, The Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0137908PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4569324PMC
May 2016

Effects of Argonaute on Gene Expression in Thermus thermophilus.

PLoS One 2015 22;10(4):e0124880. Epub 2015 Apr 22.

Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0124880PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4406477PMC
April 2016

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource.

J Biomed Semantics 2015 23;6:39. Epub 2015 Oct 23.

Laboratory of Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, Wageningen, 6703 HB The Netherlands.

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http://dx.doi.org/10.1186/s13326-015-0038-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4619317PMC
October 2015

Comparative genomics of Streptococcus pyogenes M1 isolates differing in virulence and propensity to cause systemic infection in mice.

Int J Med Microbiol 2015 Sep 23;305(6):532-43. Epub 2015 Jun 23.

Microbial Interactions and Processes Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S14384221150005
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http://dx.doi.org/10.1016/j.ijmm.2015.06.002DOI Listing
September 2015

A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid degrading communities.

Biochim Biophys Acta 2014 Dec 26;1837(12):2004-2016. Epub 2014 Jun 26.

Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB Wageningen, The Netherlands; Centre of Biological Engineering, University of Minho, 4710-057 Braga, Portugal.

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http://dx.doi.org/10.1016/j.bbabio.2014.06.005DOI Listing
December 2014

Differential translation tunes uneven production of operon-encoded proteins.

Cell Rep 2013 Sep 5;4(5):938-44. Epub 2013 Sep 5.

Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB Wageningen, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2013.07.049DOI Listing
September 2013