Jaroslaw Meller

Jaroslaw Meller

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Jaroslaw Meller

Jaroslaw Meller

Publications by authors named "Jaroslaw Meller"

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Variability of indoor fungal microbiome of green and non-green low-income homes in Cincinnati, Ohio.

Sci Total Environ 2018 Jan 10;610-611:212-218. Epub 2017 Aug 10.

University of Cincinnati, Department of Environmental Health, P.O. Box 670056, Cincinnati, OH, USA. Electronic address:

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http://dx.doi.org/10.1016/j.scitotenv.2017.07.274DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6728913PMC
January 2018

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.

Authors:
Alexandra B Keenan Sherry L Jenkins Kathleen M Jagodnik Simon Koplev Edward He Denis Torre Zichen Wang Anders B Dohlman Moshe C Silverstein Alexander Lachmann Maxim V Kuleshov Avi Ma'ayan Vasileios Stathias Raymond Terryn Daniel Cooper Michele Forlin Amar Koleti Dusica Vidovic Caty Chung Stephan C Schürer Jouzas Vasiliauskas Marcin Pilarczyk Behrouz Shamsaei Mehdi Fazel Yan Ren Wen Niu Nicholas A Clark Shana White Naim Mahi Lixia Zhang Michal Kouril John F Reichard Siva Sivaganesan Mario Medvedovic Jaroslaw Meller Rick J Koch Marc R Birtwistle Ravi Iyengar Eric A Sobie Evren U Azeloglu Julia Kaye Jeannette Osterloh Kelly Haston Jaslin Kalra Steve Finkbiener Jonathan Li Pamela Milani Miriam Adam Renan Escalante-Chong Karen Sachs Alex Lenail Divya Ramamoorthy Ernest Fraenkel Gavin Daigle Uzma Hussain Alyssa Coye Jeffrey Rothstein Dhruv Sareen Loren Ornelas Maria Banuelos Berhan Mandefro Ritchie Ho Clive N Svendsen Ryan G Lim Jennifer Stocksdale Malcolm S Casale Terri G Thompson Jie Wu Leslie M Thompson Victoria Dardov Vidya Venkatraman Andrea Matlock Jennifer E Van Eyk Jacob D Jaffe Malvina Papanastasiou Aravind Subramanian Todd R Golub Sean D Erickson Mohammad Fallahi-Sichani Marc Hafner Nathanael S Gray Jia-Ren Lin Caitlin E Mills Jeremy L Muhlich Mario Niepel Caroline E Shamu Elizabeth H Williams David Wrobel Peter K Sorger Laura M Heiser Joe W Gray James E Korkola Gordon B Mills Mark LaBarge Heidi S Feiler Mark A Dane Elmar Bucher Michel Nederlof Damir Sudar Sean Gross David F Kilburn Rebecca Smith Kaylyn Devlin Ron Margolis Leslie Derr Albert Lee Ajay Pillai

Cell Syst 2018 01 29;6(1):13-24. Epub 2017 Nov 29.

NIH, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1016/j.cels.2017.11.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5799026PMC
January 2018

Leveraging Food and Drug Administration Adverse Event Reports for the Automated Monitoring of Electronic Health Records in a Pediatric Hospital.

Biomed Inform Insights 2017 8;9:1178222617713018. Epub 2017 Jun 8.

Department of Biomedical Informatics, Cincinnati Children's Hospital Medical Center (CCHMC), Cincinnati, OH, USA.

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http://dx.doi.org/10.1177/1178222617713018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5467704PMC
June 2017

The SRL peptide of rhesus rotavirus VP4 protein governs cholangiocyte infection and the murine model of biliary atresia.

Hepatology 2017 04 10;65(4):1278-1292. Epub 2017 Jan 10.

Department of Pediatric and Thoracic Surgery, Cincinnati Children's Hospital Medical Center, Cincinnati, OH.

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http://dx.doi.org/10.1002/hep.28947DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5360466PMC
April 2017

Comprehensive analysis of sequences of a protein switch.

Protein Sci 2016 Jan 1;25(1):135-46. Epub 2015 Jul 1.

Institute for Computational Engineering and Sciences, University of Texas at Austin, Austin, Texas.

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http://dx.doi.org/10.1002/pro.2723DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4815306PMC
January 2016

Rhesus rotavirus VP4 sequence-specific activation of mononuclear cells is associated with cholangiopathy in murine biliary atresia.

Am J Physiol Gastrointest Liver Physiol 2015 Sep 23;309(6):G466-74. Epub 2015 Jul 23.

Department of Pediatric and Thoracic Surgery, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio;

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http://dx.doi.org/10.1152/ajpgi.00079.2015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572408PMC
September 2015

Interaction between Na-K-ATPase and Bcl-2 proteins BclXL and Bak.

Am J Physiol Cell Physiol 2015 Jan 15;308(1):C51-60. Epub 2014 Oct 15.

Cell Biophysics Group, Wright State University Boonshoft School of Medicine, Dayton, Ohio; Department of Pharmacology and Toxicology, Wright State University Boonshoft School of Medicine, Dayton, Ohio; and.

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http://www.physiology.org/doi/10.1152/ajpcell.00287.2014
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http://dx.doi.org/10.1152/ajpcell.00287.2014DOI Listing
January 2015

Rational design of small molecule inhibitors targeting the Ras GEF, SOS1.

Chem Biol 2014 Dec 20;21(12):1618-28. Epub 2014 Nov 20.

Division of Experimental Hematology and Cancer Biology, Children's Hospital Research Foundation, Cincinnati, OH 45229, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chembiol.2014.09.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4272618PMC
December 2014

Genetic risk signatures of opioid-induced respiratory depression following pediatric tonsillectomy.

Pharmacogenomics 2014 Nov;15(14):1749-1762

Division of Biomedical Informatics, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.

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http://dx.doi.org/10.2217/pgs.14.137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4287371PMC
November 2014

Secretory phospholipase A2-IIa upregulates HER/HER2-elicited signaling in lung cancer cells.

Int J Oncol 2014 Sep 10;45(3):978-84. Epub 2014 Jun 10.

Department of Pathology, University of Cincinnati College of Medicine, Cincinnati, OH 45237, USA.

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http://dx.doi.org/10.3892/ijo.2014.2486DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4121404PMC
September 2014

On setting up and assessing docking simulations for virtual screening.

Methods Mol Biol 2012 ;928:1-16

Biomedical Informatics, Children's Hospital Research Foundation, Cincinnati, OH, USA.

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http://link.springer.com/10.1007/978-1-62703-008-3_1
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http://dx.doi.org/10.1007/978-1-62703-008-3_1DOI Listing
February 2013

Analysis of current antifungal agents and their targets within the Pneumocystis carinii genome.

Curr Drug Targets 2012 Nov;13(12):1575-85

Department of Environmental Health, University of Cincinnati, Cincinnati, OH 45267-0056, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3907186PMC
http://dx.doi.org/10.2174/138945012803530107DOI Listing
November 2012

Fast geometric consensus approach for protein model quality assessment.

J Comput Biol 2011 Dec 18;18(12):1807-18. Epub 2011 Jan 18.

Department of Environmental Health, University of Cincinnati College of Medicine, Cincinnati, Ohio 45226, USA.

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http://dx.doi.org/10.1089/cmb.2010.0170DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3228594PMC
December 2011

Solvent and lipid accessibility prediction as a basis for model quality assessment in soluble and membrane proteins.

Curr Protein Pept Sci 2011 Sep;12(6):563-73

Department of Environmental Health, University of Cincinnati, Cincinnati, OH 45267, USA.

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http://dx.doi.org/10.2174/138920311796957603DOI Listing
September 2011

Survey of public domain software for docking simulations and virtual screening.

Hum Genomics 2011 Jul;5(5):497-505

Biomedical Informatics, Children's Hospital Research Foundation, Cincinnati, OH 45229, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3525969PMC
http://dx.doi.org/10.1186/1479-7364-5-5-497DOI Listing
July 2011

Enhanced prediction of conformational flexibility and phosphorylation in proteins.

Adv Exp Med Biol 2010 ;680:307-19

Department of Biomedical Engineering, University of Cincinnati, Cincinnati, OH, USA.

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http://dx.doi.org/10.1007/978-1-4419-5913-3_35DOI Listing
February 2011

POLYVIEW-MM: web-based platform for animation and analysis of molecular simulations.

Nucleic Acids Res 2010 Jul 26;38(Web Server issue):W662-6. Epub 2010 May 26.

Department of Environmental Health, University of Cincinnati, Cincinnati, OH, USA.

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http://dx.doi.org/10.1093/nar/gkq445DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896192PMC
July 2010

Genomics Portals: integrative web-platform for mining genomics data.

BMC Genomics 2010 Jan 13;11:27. Epub 2010 Jan 13.

Laboratory for Statistical Genomics and Systems Biology, Department of Environmental Health, University of Cincinnati College of Medicine, Cincinnati OH 45267-0056, USA.

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http://dx.doi.org/10.1186/1471-2164-11-27DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2824719PMC
January 2010

Building and assessing atomic models of proteins from structural templates: learning and benchmarks.

Proteins 2009 Sep;76(4):930-45

Department of Chemistry and Biochemistry, Institute of Computational Engineering and Sciences, University of Texas at Austin, Austin, Texas 78712, USA.

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http://dx.doi.org/10.1002/prot.22401DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2719020PMC
September 2009

Sensitivity analysis for reversal distance and breakpoint reuse in genome rearrangements.

Pac Symp Biocomput 2008 :37-48

Department of Computer Science, University of Cincinnati, Cincinnati, OH 45221, USA.

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March 2008

Large-scale characterization of introns in the Pneumocystis carinii genome.

J Eukaryot Microbiol 2006 ;53 Suppl 1:S151-3

University of Cincinnati College of Medicine, Cincinnati, Ohio 46267-0560, USA.

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http://dx.doi.org/10.1111/j.1550-7408.2006.00211.xDOI Listing
October 2007

Draft assembly and annotation of the Pneumocystis carinii genome.

J Eukaryot Microbiol 2006 ;53 Suppl 1:S89-91

University of Cincinnati College of Medicine, Cincinnati, Ohio 46267-0560, USA.

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http://dx.doi.org/10.1111/j.1550-7408.2006.00184.xDOI Listing
October 2007

Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D.

BMC Bioinformatics 2007 Aug 29;8:316. Epub 2007 Aug 29.

Department of Environmental Health, University of Cincinnati, Cincinnati, OH 45267, USA.

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http://dx.doi.org/10.1186/1471-2105-8-316DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1978507PMC
August 2007

Artificial intelligence approaches for rational drug design and discovery.

Curr Pharm Des 2007 ;13(14):1497-508

Department of Informatics, Nicolaus Copernicus University, Grudziadzka 5, Toruń, Poland.

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http://dx.doi.org/10.2174/138161207780765954DOI Listing
June 2007

Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms.

BMC Bioinformatics 2007 Mar 8;8:82. Epub 2007 Mar 8.

Department of Computer Science, University of Cincinnati, Cincinnati, OH 45221, USA.

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http://dx.doi.org/10.1186/1471-2105-8-82DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1821339PMC
March 2007

Prediction-based fingerprints of protein-protein interactions.

Proteins 2007 Feb;66(3):630-45

Division of Biomedical Informatics, Children's Hospital Research Foundation, Cincinnati, Ohio 45229, USA.

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http://dx.doi.org/10.1002/prot.21248DOI Listing
February 2007

Enhanced recognition of protein transmembrane domains with prediction-based structural profiles.

Bioinformatics 2006 Feb 17;22(3):303-9. Epub 2005 Nov 17.

Biomedical Informatics, Children's Hospital Research Foundation, Cincinnati, OH 45229, USA.

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http://dx.doi.org/10.1093/bioinformatics/bti784DOI Listing
February 2006

Combining prediction of secondary structure and solvent accessibility in proteins.

Proteins 2005 May;59(3):467-75

Biomedical Informatics, Children's Hospital Research Foundation, Cincinnati, Ohio 45229, USA.

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http://doi.wiley.com/10.1002/prot.20441
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http://dx.doi.org/10.1002/prot.20441DOI Listing
May 2005

Linear regression models for solvent accessibility prediction in proteins.

J Comput Biol 2005 Apr;12(3):355-69

Division of Biomedical Informatics, Cincinnati Children's Hospital Research Foundation, 3333 Burnet Avenue, Cincinnati, OH 45229, USA.

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http://dx.doi.org/10.1089/cmb.2005.12.355DOI Listing
April 2005

A central domain of cyclin D1 mediates nuclear receptor corepressor activity.

Oncogene 2005 Jan;24(3):431-44

Department of Cell Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45267-0521, USA.

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http://dx.doi.org/10.1038/sj.onc.1208200DOI Listing
January 2005

POLYVIEW: a flexible visualization tool for structural and functional annotations of proteins.

Bioinformatics 2004 Oct 8;20(15):2460-2. Epub 2004 Apr 8.

Children's Hospital Research Foundation, 3333 Burnet Avenue, Cincinnati, OH 45229, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/bth248DOI Listing
October 2004

Accurate prediction of solvent accessibility using neural networks-based regression.

Proteins 2004 Sep;56(4):753-67

Children's Hospital Research Foundation, Cincinnati, Ohio, USA.

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http://dx.doi.org/10.1002/prot.20176DOI Listing
September 2004

von Hippel-Lindau tumor suppressor: not only HIF's executioner.

Trends Mol Med 2004 Apr;10(4):146-9

Department of Genome Science, University of Cincinnati College of Medicine, Cincinnati, OH 45267-0505, USA.

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http://dx.doi.org/10.1016/j.molmed.2004.02.004DOI Listing
April 2004

Mutations within the P2 domain of norovirus capsid affect binding to human histo-blood group antigens: evidence for a binding pocket.

J Virol 2003 Dec;77(23):12562-71

Division of Infectious Diseases and Division of Pediatric Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio 45229, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC262557PMC
http://dx.doi.org/10.1128/jvi.77.23.12562-12571.2003DOI Listing
December 2003

Deuterium isotope effects on hydrophobic interactions: the importance of dispersion interactions in the hydrophobic phase.

J Am Chem Soc 2003 Nov;125(45):13836-49

Department of Polymer Science and Engineering, Kyoto Institute of Technology, Matsugasaki, Sakyo-ku, Kyoto 606-8585, Japan.

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http://dx.doi.org/10.1021/ja036006gDOI Listing
November 2003

von Hippel-Lindau protein binds hyperphosphorylated large subunit of RNA polymerase II through a proline hydroxylation motif and targets it for ubiquitination.

Proc Natl Acad Sci U S A 2003 Mar 25;100(5):2706-11. Epub 2003 Feb 25.

Department of Molecular and Cellular Physiology, Children's Hospital Research Foundation, University of Cincinnati College of Medicine, Cincinnati, OH 45267-0576, USA.

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http://dx.doi.org/10.1073/pnas.0436037100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151405PMC
March 2003

Maximum feasibility guideline in the design and analysis of protein folding potentials.

J Comput Chem 2002 Jan;23(1):111-8

Department of Computer Science, Cornell University, Ithaca, New York 14853, USA.

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http://dx.doi.org/10.1002/jcc.10014DOI Listing
January 2002