Jaroslav Bendl

Jaroslav Bendl

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Jaroslav Bendl

Jaroslav Bendl

Publications by authors named "Jaroslav Bendl"

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decorate: Differential Epigenetic Correlation Test.

Bioinformatics 2020 Jan 31. Epub 2020 Jan 31.

Pamela Sklar Division of Psychiatric Genomics.

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http://dx.doi.org/10.1093/bioinformatics/btaa067DOI Listing
January 2020

Functional interpretation of genetic variants using deep learning predicts impact on chromatin accessibility and histone modification.

Nucleic Acids Res 2019 Nov;47(20):10597-10611

Pamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

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http://dx.doi.org/10.1093/nar/gkz808DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6847046PMC
November 2019

An atlas of chromatin accessibility in the adult human brain.

Genome Res 2018 08 26;28(8):1243-1252. Epub 2018 Jun 26.

Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, New York 10029, USA.

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http://genome.cshlp.org/lookup/doi/10.1101/gr.232488.117
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http://dx.doi.org/10.1101/gr.232488.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6071637PMC
August 2018

FireProt: web server for automated design of thermostable proteins.

Nucleic Acids Res 2017 07;45(W1):W393-W399

Loschmidt Laboratories, Department of Experimental Biology, Masaryk University, Brno, Czech Republic.

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http://dx.doi.org/10.1093/nar/gkx285DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5570187PMC
July 2017

NewProt - a protein engineering portal.

Protein Eng Des Sel 2017 06;30(6):441-447

CMBI, Radboud University Medical Centre, Geert Grooteplein Zuid 26-28, 6525 GA Nijmegen, The Netherlands.

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http://dx.doi.org/10.1093/protein/gzx024DOI Listing
June 2017

HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering.

Nucleic Acids Res 2016 07 12;44(W1):W479-87. Epub 2016 May 12.

Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment RECETOX, Masaryk University, 625 00 Brno, Czech Republic International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic

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http://dx.doi.org/10.1093/nar/gkw416DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987947PMC
July 2016

PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions.

PLoS Comput Biol 2016 05 25;12(5):e1004962. Epub 2016 May 25.

Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment RECETOX, Masaryk University, Brno, Czech Republic.

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http://dx.doi.org/10.1371/journal.pcbi.1004962DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4880439PMC
May 2016

FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants.

PLoS Comput Biol 2015 Nov 3;11(11):e1004556. Epub 2015 Nov 3.

Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment RECETOX, Masaryk University, Brno, Czech Republic; International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic; Enantis, Ltd., Brno, Czech Republic.

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http://dx.doi.org/10.1371/journal.pcbi.1004556DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4631455PMC
November 2015

Computational tools for designing smart libraries.

Methods Mol Biol 2014 ;1179:291-314

Loschmidt Laboratories, Masaryk University, Kamenice 5/A13, 625 00, Brno, Czech Republic.

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http://dx.doi.org/10.1007/978-1-4939-1053-3_20DOI Listing
March 2015

Maximizing the efficiency of multienzyme process by stoichiometry optimization.

Chembiochem 2014 Sep 5;15(13):1891-5. Epub 2014 Aug 5.

Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625 00 Brno (Czech Republic); International Clinical Research Center, St. Anne's University Hospital Brno, Pekarska 53, 656 91 Brno (Czech Republic).

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http://dx.doi.org/10.1002/cbic.201402265DOI Listing
September 2014

Computer-assisted engineering of the synthetic pathway for biodegradation of a toxic persistent pollutant.

ACS Synth Biol 2014 Mar 17;3(3):172-81. Epub 2013 Dec 17.

Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment, Faculty of Science, Masaryk University , Kamenice 5/A13, 625 00 Brno, Czech Republic.

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http://dx.doi.org/10.1021/sb400147nDOI Listing
March 2014

PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations.

PLoS Comput Biol 2014 Jan 16;10(1):e1003440. Epub 2014 Jan 16.

Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment, Faculty of Science, Masaryk University, Brno, Czech Republic ; Center of Biomolecular and Cellular Engineering, International Centre for Clinical Research, St. Anne's University Hospital Brno, Brno, Czech Republic.

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http://dx.doi.org/10.1371/journal.pcbi.1003440DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3894168PMC
January 2014