Publications by authors named "Janine E Deakin"

59Publications

Comparative Cytogenetic Mapping and Telomere Analysis Provide Evolutionary Predictions for Devil Facial Tumour 2.

Genes (Basel) 2020 04 28;11(5). Epub 2020 Apr 28.

Institute for Applied Ecology, University of Canberra, Canberra, ACT 2617, Australia.

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http://dx.doi.org/10.3390/genes11050480DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7290341PMC
April 2020

Evolution of Marsupial Genomes.

Annu Rev Anim Biosci 2020 02 11;8:25-45. Epub 2019 Dec 11.

Department of Molecular and Cell Biology and Institute for Systems Genomics, University of Connecticut, Storrs, Connecticut 06269, USA; email:

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http://dx.doi.org/10.1146/annurev-animal-021419-083555DOI Listing
February 2020

Sexual conflict in action: An antagonistic relationship between maternal and paternal sex allocation in the tammar wallaby, .

Ecol Evol 2019 Apr 5;9(8):4340-4348. Epub 2019 Apr 5.

Department of Ecology, Environment and Evolution, School of Life Sciences La Trobe University Melbourne Victoria Australia.

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http://dx.doi.org/10.1002/ece3.4813DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6476839PMC
April 2019

Marsupial chromosomics: bridging the gap between genomes and chromosomes.

Reprod Fertil Dev 2019 Jul;31(7):1189-1202

Research School of Biology, Australian National University, Acton, ACT 2601, Australia.

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http://www.publish.csiro.au/?paper=RD18201
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http://dx.doi.org/10.1071/RD18201DOI Listing
July 2019

The methylation and telomere landscape in two families of marsupials with different rates of chromosome evolution.

Chromosome Res 2018 12 12;26(4):317-332. Epub 2018 Dec 12.

Institute for Applied Ecology, University of Canberra, Canberra, ACT, 2617, Australia.

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http://dx.doi.org/10.1007/s10577-018-9593-0DOI Listing
December 2018

Chromosome Evolution in Marsupials.

Authors:
Janine E Deakin

Genes (Basel) 2018 Feb 6;9(2). Epub 2018 Feb 6.

Institute for Applied Ecology, University of Canberra, Canberra, ACT 2617, Australia.

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http://dx.doi.org/10.3390/genes9020072DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5852568PMC
February 2018

Identification of candidate genes for devil facial tumour disease tumourigenesis.

Sci Rep 2017 08 18;7(1):8761. Epub 2017 Aug 18.

Institute for Applied Ecology, University of Canberra, Canberra, ACT, 2617, Australia.

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http://dx.doi.org/10.1038/s41598-017-08908-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5562891PMC
August 2017

Chromosomal Speciation in the Genomics Era: Disentangling Phylogenetic Evolution of Rock-wallabies.

Front Genet 2017 10;8:10. Epub 2017 Feb 10.

Research School of Biology, Australian National University, Acton ACT, Australia.

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http://dx.doi.org/10.3389/fgene.2017.00010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5301020PMC
February 2017

Identification of interleukin genes in Pogona vitticeps using a de novo transcriptome assembly from RNA-seq data.

Immunogenetics 2016 10 2;68(9):719-31. Epub 2016 Jun 2.

Institute for Applied Ecology, University of Canberra, Canberra, ACT, 2617, Australia.

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http://dx.doi.org/10.1007/s00251-016-0922-1DOI Listing
October 2016

Marsupials as models for understanding the role of chromosome rearrangements in evolution and disease.

Chromosoma 2016 09 3;125(4):633-44. Epub 2016 Jun 3.

Institute for Applied Ecology, University of Canberra, Canberra, ACT, 2617, Australia.

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http://dx.doi.org/10.1007/s00412-016-0603-8DOI Listing
September 2016

Immunofluorescent staining reveals hypermethylation of microchromosomes in the central bearded dragon, Pogona vitticeps.

Mol Cytogenet 2015 30;8:104. Epub 2015 Dec 30.

Institute for Applied Ecology, University of Canberra, Canberra, ACT 2601 Australia.

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http://dx.doi.org/10.1186/s13039-015-0208-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4696178PMC
December 2015

Global DNA Methylation patterns on marsupial and devil facial tumour chromosomes.

Mol Cytogenet 2015 1;8:74. Epub 2015 Oct 1.

Institute for Applied Ecology, University of Canberra, Canberra, ACT 2601 Australia.

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http://www.molecularcytogenetics.org/content/8/1/74
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http://dx.doi.org/10.1186/s13039-015-0176-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4591559PMC
October 2015

Implications of monotreme and marsupial chromosome evolution on sex determination and differentiation.

Authors:
Janine E Deakin

Gen Comp Endocrinol 2017 04 30;244:130-138. Epub 2015 Sep 30.

Institute for Applied Ecology, University of Canberra, Canberra, ACT 2601, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.ygcen.2015.09.029DOI Listing
April 2017

A peculiar lamin in a peculiar mammal: Expression of lamin LIII in platypus (Ornithorhynchus anatinus).

Eur J Cell Biol 2015 Nov 14;94(11):522-30. Epub 2015 Jul 14.

Department of Cell Biology, FB2, University of Bremen, P.O. Box 33 04 40, 28334 Bremen, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.ejcb.2015.07.001DOI Listing
November 2015

Marsupials and monotremes possess a novel family of MHC class I genes that is lost from the eutherian lineage.

BMC Genomics 2015 Jul 22;16:535. Epub 2015 Jul 22.

Center for Evolutionary and Theoretical Immunology, Department of Biology, University of New Mexico, Albuquerque, NM, 87131-0001, USA.

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http://dx.doi.org/10.1186/s12864-015-1745-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4509613PMC
July 2015

Pathogenesis and molecular biology of a transmissible tumor in the Tasmanian devil.

Annu Rev Anim Biosci 2014 Feb 18;2:165-87. Epub 2013 Nov 18.

Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia.

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http://dx.doi.org/10.1146/annurev-animal-022513-114204DOI Listing
February 2014

Tracing the evolution of amniote chromosomes.

Chromosoma 2014 Jun 25;123(3):201-16. Epub 2014 Mar 25.

Institute for Applied Ecology, University of Canberra, Canberra, 2601, Australia,

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http://dx.doi.org/10.1007/s00412-014-0456-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4031395PMC
June 2014

Independent evolution of transcriptional inactivation on sex chromosomes in birds and mammals.

PLoS Genet 2013 18;9(7):e1003635. Epub 2013 Jul 18.

Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia.

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http://dx.doi.org/10.1371/journal.pgen.1003635DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715422PMC
January 2014

Exceptionally high conservation of the MHC class I-related gene, MR1, among mammals.

Immunogenetics 2013 Feb 16;65(2):115-24. Epub 2012 Nov 16.

Institute for Comprehensive Medical Science, Fujita Health University, Toyoake, Aichi, Japan.

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http://dx.doi.org/10.1007/s00251-012-0666-5DOI Listing
February 2013

A comparative genomics approach to understanding transmissible cancer in Tasmanian devils.

Annu Rev Genomics Hum Genet 2012 29;13:207-22. Epub 2012 May 29.

Research School of Biology, The Australian National University, Canberra 0200, Australia.

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http://www.annualreviews.org/doi/10.1146/annurev-genom-09071
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http://dx.doi.org/10.1146/annurev-genom-090711-163852DOI Listing
January 2013

Marsupial genome sequences: providing insight into evolution and disease.

Authors:
Janine E Deakin

Scientifica (Cairo) 2012 25;2012:543176. Epub 2012 Nov 25.

Division of Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia.

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http://dx.doi.org/10.6064/2012/543176DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3820666PMC
November 2013

A cross-species comparison of escape from X inactivation in Eutheria: implications for evolution of X chromosome inactivation.

Chromosoma 2012 Feb 27;121(1):71-8. Epub 2011 Sep 27.

Evolution Ecology and Genetics, Research School of Biology, The Australian National University, ACT 2601, Canberra, Australia.

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http://dx.doi.org/10.1007/s00412-011-0343-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3260438PMC
February 2012

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development.

Authors:
Marilyn B Renfree Anthony T Papenfuss Janine E Deakin James Lindsay Thomas Heider Katherine Belov Willem Rens Paul D Waters Elizabeth A Pharo Geoff Shaw Emily S W Wong Christophe M Lefèvre Kevin R Nicholas Yoko Kuroki Matthew J Wakefield Kyall R Zenger Chenwei Wang Malcolm Ferguson-Smith Frank W Nicholas Danielle Hickford Hongshi Yu Kirsty R Short Hannah V Siddle Stephen R Frankenberg Keng Yih Chew Brandon R Menzies Jessica M Stringer Shunsuke Suzuki Timothy A Hore Margaret L Delbridge Hardip R Patel Amir Mohammadi Nanette Y Schneider Yanqiu Hu William O'Hara Shafagh Al Nadaf Chen Wu Zhi-Ping Feng Benjamin G Cocks Jianghui Wang Paul Flicek Stephen M J Searle Susan Fairley Kathryn Beal Javier Herrero Dawn M Carone Yutaka Suzuki Sumio Sugano Atsushi Toyoda Yoshiyuki Sakaki Shinji Kondo Yuichiro Nishida Shoji Tatsumoto Ion Mandiou Arthur Hsu Kaighin A McColl Benjamin Lansdell George Weinstock Elizabeth Kuczek Annette McGrath Peter Wilson Artem Men Mehlika Hazar-Rethinam Allison Hall John Davis David Wood Sarah Williams Yogi Sundaravadanam Donna M Muzny Shalini N Jhangiani Lora R Lewis Margaret B Morgan Geoffrey O Okwuonu San Juana Ruiz Jireh Santibanez Lynne Nazareth Andrew Cree Gerald Fowler Christie L Kovar Huyen H Dinh Vandita Joshi Chyn Jing Fremiet Lara Rebecca Thornton Lei Chen Jixin Deng Yue Liu Joshua Y Shen Xing-Zhi Song Janette Edson Carmen Troon Daniel Thomas Amber Stephens Lankesha Yapa Tanya Levchenko Richard A Gibbs Desmond W Cooper Terence P Speed Asao Fujiyama Jennifer A M Graves Rachel J O'Neill Andrew J Pask Susan M Forrest Kim C Worley

Genome Biol 2011 Aug 29;12(8):R81. Epub 2011 Aug 29.

The Australian Research Council Centre of Excellence in Kangaroo Genomics, Australia.

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http://dx.doi.org/10.1186/gb-2011-12-8-r81DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3277949PMC
August 2011

Activity map of the tammar X chromosome shows that marsupial X inactivation is incomplete and escape is stochastic.

Genome Biol 2010 23;11(12):R122. Epub 2010 Dec 23.

Research School of Biology, The Australian National University, Biology Place, Canberra 0200, Australia.

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http://dx.doi.org/10.1186/gb-2010-11-12-r122DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3046482PMC
June 2011

Globin gene structure in a reptile supports the transpositional model for amniote α- and β-globin gene evolution.

Chromosome Res 2010 Dec 30;18(8):897-907. Epub 2010 Nov 30.

Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia.

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http://dx.doi.org/10.1007/s10577-010-9164-5DOI Listing
December 2010

Replication asynchrony and differential condensation of X chromosomes in female platypus (Ornithorhynchus anatinus).

Reprod Fertil Dev 2009 ;21(8):952-63

School of Molecular and Biomedical Science, The University of Adelaide, Adelaide, SA 5005, Australia.

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http://dx.doi.org/10.1071/RD09099DOI Listing
February 2010

Unravelling the evolutionary origins of X chromosome inactivation in mammals: insights from marsupials and monotremes.

Chromosome Res 2009 ;17(5):671-85

Comparative Genomics Group, School of Biology, College of Medicine, Biology and Environment, The Australian National University, Canberra, ACT 0200, Australia.

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http://link.springer.com/10.1007/s10577-009-9058-6
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http://dx.doi.org/10.1007/s10577-009-9058-6DOI Listing
November 2009

MHC-linked and un-linked class I genes in the wallaby.

BMC Genomics 2009 Jul 14;10:310. Epub 2009 Jul 14.

Faculty of Veterinary Science, University of Sydney, NSW 2006, Australia.

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http://dx.doi.org/10.1186/1471-2164-10-310DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2719672PMC
July 2009

Identification of natural killer cell receptor clusters in the platypus genome reveals an expansion of C-type lectin genes.

Immunogenetics 2009 Aug 14;61(8):565-79. Epub 2009 Jul 14.

Faculty of Veterinary Science, University of Sydney, B19 RMC Gunn, Sydney, NSW, 2006, Australia.

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http://link.springer.com/10.1007/s00251-009-0386-7
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http://dx.doi.org/10.1007/s00251-009-0386-7DOI Listing
August 2009

Physical map of two tammar wallaby chromosomes: a strategy for mapping in non-model mammals.

Chromosome Res 2008 8;16(8):1159-75. Epub 2008 Nov 8.

ARC Centre of Excellence for Kangaroo Genomics, Research School of Biological Sciences, The Australian National University, Canberra, ACT 0200, Australia.

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http://dx.doi.org/10.1007/s10577-008-1266-yDOI Listing
March 2009

The evolution of epigenetic regulators CTCF and BORIS/CTCFL in amniotes.

PLoS Genet 2008 Aug 29;4(8):e1000169. Epub 2008 Aug 29.

ARC Centre for Kangaroo Genomics, Research School of Biological Sciences, The Australian National University, Canberra, Australian Capital Territory, Australia.

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http://dx.doi.org/10.1371/journal.pgen.1000169DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2515639PMC
August 2008

Platypus globin genes and flanking loci suggest a new insertional model for beta-globin evolution in birds and mammals.

BMC Biol 2008 Jul 25;6:34. Epub 2008 Jul 25.

The ARC Centre for Kangaroo Genomics, Research School of Biological Sciences, The Australian National University, Canberra, ACT 2601, Australia.

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http://dx.doi.org/10.1186/1741-7007-6-34DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2529266PMC
July 2008

The status of dosage compensation in the multiple X chromosomes of the platypus.

PLoS Genet 2008 Jul 25;4(7):e1000140. Epub 2008 Jul 25.

Research School of Biological Sciences, The Australian National University, Canberra, Australia.

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http://dx.doi.org/10.1371/journal.pgen.1000140DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2453332PMC
July 2008

Genome analysis of the platypus reveals unique signatures of evolution.

Authors:
Wesley C Warren LaDeana W Hillier Jennifer A Marshall Graves Ewan Birney Chris P Ponting Frank Grützner Katherine Belov Webb Miller Laura Clarke Asif T Chinwalla Shiaw-Pyng Yang Andreas Heger Devin P Locke Pat Miethke Paul D Waters Frédéric Veyrunes Lucinda Fulton Bob Fulton Tina Graves John Wallis Xose S Puente Carlos López-Otín Gonzalo R Ordóñez Evan E Eichler Lin Chen Ze Cheng Janine E Deakin Amber Alsop Katherine Thompson Patrick Kirby Anthony T Papenfuss Matthew J Wakefield Tsviya Olender Doron Lancet Gavin A Huttley Arian F A Smit Andrew Pask Peter Temple-Smith Mark A Batzer Jerilyn A Walker Miriam K Konkel Robert S Harris Camilla M Whittington Emily S W Wong Neil J Gemmell Emmanuel Buschiazzo Iris M Vargas Jentzsch Angelika Merkel Juergen Schmitz Anja Zemann Gennady Churakov Jan Ole Kriegs Juergen Brosius Elizabeth P Murchison Ravi Sachidanandam Carly Smith Gregory J Hannon Enkhjargal Tsend-Ayush Daniel McMillan Rosalind Attenborough Willem Rens Malcolm Ferguson-Smith Christophe M Lefèvre Julie A Sharp Kevin R Nicholas David A Ray Michael Kube Richard Reinhardt Thomas H Pringle James Taylor Russell C Jones Brett Nixon Jean-Louis Dacheux Hitoshi Niwa Yoko Sekita Xiaoqiu Huang Alexander Stark Pouya Kheradpour Manolis Kellis Paul Flicek Yuan Chen Caleb Webber Ross Hardison Joanne Nelson Kym Hallsworth-Pepin Kim Delehaunty Chris Markovic Pat Minx Yucheng Feng Colin Kremitzki Makedonka Mitreva Jarret Glasscock Todd Wylie Patricia Wohldmann Prathapan Thiru Michael N Nhan Craig S Pohl Scott M Smith Shunfeng Hou Mikhail Nefedov Pieter J de Jong Marilyn B Renfree Elaine R Mardis Richard K Wilson

Nature 2008 May;453(7192):175-83

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature06936DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2803040PMC
May 2008

Origin and evolution of candidate mental retardation genes on the human X chromosome (MRX).

BMC Genomics 2008 Feb 5;9:65. Epub 2008 Feb 5.

Comparative Genomics Group, Research School of Biological Sciences, The Australian National University, Canberra, ACT 2601, Australia.

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http://dx.doi.org/10.1186/1471-2164-9-65DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2276207PMC
February 2008

A unique T cell receptor discovered in marsupials.

Proc Natl Acad Sci U S A 2007 Jun 29;104(23):9776-81. Epub 2007 May 29.

Center for Evolutionary and Theoretical Immunology and Department of Biology, University of New Mexico, Albuquerque, NM 87131, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0609106104
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http://dx.doi.org/10.1073/pnas.0609106104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1887558PMC
June 2007

Evolution and comparative analysis of the MHC Class III inflammatory region.

BMC Genomics 2006 Nov 2;7:281. Epub 2006 Nov 2.

ARC Centre for Kangaroo Genomics, Research School of Biological Sciences, The Australian National University, Canberra, ACT 0200, Australia.

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http://dx.doi.org/10.1186/1471-2164-7-281DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1654159PMC
November 2006

Recent assembly of an imprinted domain from non-imprinted components.

PLoS Genet 2006 Oct;2(10):e182

Australian Research Council Center for Kangaroo Genomics and Research School of Biological Sciences, Australian National University, Canberra, Australia.

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http://dx.doi.org/10.1371/journal.pgen.0020182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1626109PMC
October 2006

DMRT gene cluster analysis in the platypus: new insights into genomic organization and regulatory regions.

Genomics 2007 Jan 7;89(1):10-21. Epub 2006 Sep 7.

Comparative Genomics Group, Research School of Biological Sciences, Australian National University, P.O. Box 475, Canberra, ACT 2601, Australia.

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http://dx.doi.org/10.1016/j.ygeno.2006.07.017DOI Listing
January 2007

Isolation of major histocompatibility complex Class I genes from the tammar wallaby (Macropus eugenii).

Immunogenetics 2006 Jun 28;58(5-6):487-93. Epub 2006 Mar 28.

Centre for Advanced Technologies in Animal Genetics and Reproduction, Faculty of Veterinary Science, University of Sydney, Sydney, Australia.

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http://link.springer.com/10.1007/s00251-006-0107-4
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http://dx.doi.org/10.1007/s00251-006-0107-4DOI Listing
June 2006

Characterizing the chromosomes of the Australian model marsupial Macropus eugenii (tammar wallaby).

Chromosome Res 2005 21;13(6):627-36. Epub 2005 Sep 21.

ARC Centre for Kangaroo Genomics, Research School of Biological Sciences, The Australian National University, Canberra, ACT 2601, Australia.

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http://link.springer.com/content/pdf/10.1007/s10577-005-0989
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http://link.springer.com/10.1007/s10577-005-0989-2
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http://dx.doi.org/10.1007/s10577-005-0989-2DOI Listing
January 2006

Autosomal location of genes from the conserved mammalian X in the platypus (Ornithorhynchus anatinus): implications for mammalian sex chromosome evolution.

Chromosome Res 2005 ;13(4):401-10

Comparative Genomics Group, Research Group of Biological Science, The Australian National University, Canberra, ACT, 2601, Australia.

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http://dx.doi.org/10.1007/s10577-005-0978-5DOI Listing
September 2005