Janet Kelso

Janet Kelso

UNVERIFIED PROFILE

Are you Janet Kelso?   Register this Author

Register author
Janet Kelso

Janet Kelso

Publications by authors named "Janet Kelso"

Are you Janet Kelso?   Register this Author

99Publications

3120Reads

16Profile Views

admixr-R package for reproducible analyses using ADMIXTOOLS.

Bioinformatics 2019 Sep;35(17):3194-3195

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btz030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6736366PMC
September 2019

Reviewer-coerced citation: case report, update on journal policy and suggestions for future prevention.

Bioinformatics 2019 Sep;35(18):3217-3218

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btz071DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6748764PMC
September 2019

A genetic analysis of the Gibraltar Neanderthals.

Proc Natl Acad Sci U S A 2019 Jul 15;116(31):15610-15615. Epub 2019 Jul 15.

Centre for Human Evolution Research, Department of Earth Sciences, The Natural History Museum, London SW7 5BD, United Kingdom

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1903984116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6681707PMC
July 2019

Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity.

Curr Biol 2019 01 13;29(1):120-127.e5. Epub 2018 Dec 13.

Language and Genetics Department, Max Planck Institute for Psycholinguistics, P.O. Box 310, 6500 AH, Nijmegen, the Netherlands; Donders Institute for Brain, Cognition and Behaviour, Radboud University, P.O. Box 9101, 6500 HB, Nijmegen, the Netherlands. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cub.2018.10.065DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6380688PMC
January 2019

Immune Gene Diversity in Archaic and Present-day Humans.

Genome Biol Evol 2019 01 1;11(1):232-241. Epub 2019 Jan 1.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/gbe/evy271DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6347564PMC
January 2019

Limits of long-term selection against Neandertal introgression.

Proc Natl Acad Sci U S A 2019 01 15;116(5):1639-1644. Epub 2019 Jan 15.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany

View Article

Download full-text PDF

Source
http://www.pnas.org/lookup/doi/10.1073/pnas.1814338116
Publisher Site
http://dx.doi.org/10.1073/pnas.1814338116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6358679PMC
January 2019

Expression signatures of early-stage and advanced medaka melanomas.

Comp Biochem Physiol C Toxicol Pharmacol 2018 Jun 21;208:20-28. Epub 2017 Nov 21.

Physiological Chemistry, Biocenter, University of Wuerzburg, Am Hubland, 97074 Wuerzburg, Germany; Comprehensive Cancer Center Mainfranken, University of Wuerzburg, Am Hubland, 97074 Wuerzburg, Germany; Hagler Institute for Advanced Study and Department of Biology, Texas A&M University, College Station, TX 77843, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cbpc.2017.11.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5936653PMC
June 2018

The Contribution of Neanderthals to Phenotypic Variation in Modern Humans.

Am J Hum Genet 2017 Oct;101(4):578-589

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig 04103, Germany. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ajhg.2017.09.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5630192PMC
October 2017

40,000-Year-Old Individual from Asia Provides Insight into Early Population Structure in Eurasia.

Curr Biol 2017 Oct 12;27(20):3202-3208.e9. Epub 2017 Oct 12.

Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China; Laboratory on Molecular Paleontology of the Max Planck Institute for Evolutionary Anthropology and the Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cub.2017.09.030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6592271PMC
October 2017

A fourth Denisovan individual.

Sci Adv 2017 07 7;3(7):e1700186. Epub 2017 Jul 7.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/sciadv.1700186DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5501502PMC
July 2017

Functional implications of Neandertal introgression in modern humans.

Genome Biol 2017 04 3;18(1):61. Epub 2017 Apr 3.

Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig, 04103, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13059-017-1181-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5376702PMC
April 2017

ABAEnrichment: an R package to test for gene set expression enrichment in the adult and developing human brain.

Bioinformatics 2016 10 26;32(20):3201-3203. Epub 2016 Jun 26.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig 04103, Germany Medical Faculty, University of Leipzig, Leipzig 04103, Germany.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5048072PMC
http://dx.doi.org/10.1093/bioinformatics/btw392DOI Listing
October 2016

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.

Nature 2016 Oct 21;538(7624):201-206. Epub 2016 Sep 21.

Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature18964DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5161557PMC
October 2016

Genetic Adaptation and Neandertal Admixture Shaped the Immune System of Human Populations.

Cell 2016 Oct;167(3):643-656.e17

Human Evolutionary Genetics Unit, Institut Pasteur, Paris 75015, France; CNRS, URA3012, Paris 75015, France; Center of Bioinformatics, Biostatistics and Integrative Biology, Institut Pasteur, Paris 75015, France. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cell.2016.09.024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5075285PMC
October 2016

Genetic Evidence of Human Adaptation to a Cooked Diet.

Genome Biol Evol 2016 Apr 13;8(4):1091-103. Epub 2016 Apr 13.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/gbe/evw059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4860691PMC
April 2016

Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins.

Nature 2016 Mar 14;531(7595):504-7. Epub 2016 Mar 14.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature17405DOI Listing
March 2016

Introgression of Neandertal- and Denisovan-like Haplotypes Contributes to Adaptive Variation in Human Toll-like Receptors.

Am J Hum Genet 2016 Jan;98(1):22-33

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig 04103, Germany. Electronic address:

View Article

Download full-text PDF

Source
http://www.cell.com/ajhg/pdf/S0002-9297(15)00486-3.pdf
Web Search
http://linkinghub.elsevier.com/retrieve/pii/S000292971500486
Publisher Site
http://dx.doi.org/10.1016/j.ajhg.2015.11.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4716682PMC
January 2016

Nuclear and mitochondrial DNA sequences from two Denisovan individuals.

Proc Natl Acad Sci U S A 2015 Dec 16;112(51):15696-700. Epub 2015 Nov 16.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1519905112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4697428PMC
December 2015

deML: robust demultiplexing of Illumina sequences using a likelihood-based approach.

Bioinformatics 2015 Mar 30;31(5):770-2. Epub 2014 Oct 30.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Saxony D-04103, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btu719DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4341068PMC
March 2015

Ancient humans and the origin of modern humans.

Curr Opin Genet Dev 2014 Dec 3;29:133-8. Epub 2014 Oct 3.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.gde.2014.09.004DOI Listing
December 2014

leeHom: adaptor trimming and merging for Illumina sequencing reads.

Nucleic Acids Res 2014 Oct 6;42(18):e141. Epub 2014 Aug 6.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany

View Article

Download full-text PDF

Source
http://academic.oup.com/nar/article/42/18/e141/2434537/leeHo
Publisher Site
http://dx.doi.org/10.1093/nar/gku699DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4191382PMC
October 2014

Ancient human genomes suggest three ancestral populations for present-day Europeans.

Authors:
Iosif Lazaridis Nick Patterson Alissa Mittnik Gabriel Renaud Swapan Mallick Karola Kirsanow Peter H Sudmant Joshua G Schraiber Sergi Castellano Mark Lipson Bonnie Berger Christos Economou Ruth Bollongino Qiaomei Fu Kirsten I Bos Susanne Nordenfelt Heng Li Cesare de Filippo Kay Prüfer Susanna Sawyer Cosimo Posth Wolfgang Haak Fredrik Hallgren Elin Fornander Nadin Rohland Dominique Delsate Michael Francken Jean-Michel Guinet Joachim Wahl George Ayodo Hamza A Babiker Graciela Bailliet Elena Balanovska Oleg Balanovsky Ramiro Barrantes Gabriel Bedoya Haim Ben-Ami Judit Bene Fouad Berrada Claudio M Bravi Francesca Brisighelli George B J Busby Francesco Cali Mikhail Churnosov David E C Cole Daniel Corach Larissa Damba George van Driem Stanislav Dryomov Jean-Michel Dugoujon Sardana A Fedorova Irene Gallego Romero Marina Gubina Michael Hammer Brenna M Henn Tor Hervig Ugur Hodoglugil Aashish R Jha Sena Karachanak-Yankova Rita Khusainova Elza Khusnutdinova Rick Kittles Toomas Kivisild William Klitz Vaidutis Kučinskas Alena Kushniarevich Leila Laredj Sergey Litvinov Theologos Loukidis Robert W Mahley Béla Melegh Ene Metspalu Julio Molina Joanna Mountain Klemetti Näkkäläjärvi Desislava Nesheva Thomas Nyambo Ludmila Osipova Jüri Parik Fedor Platonov Olga Posukh Valentino Romano Francisco Rothhammer Igor Rudan Ruslan Ruizbakiev Hovhannes Sahakyan Antti Sajantila Antonio Salas Elena B Starikovskaya Ayele Tarekegn Draga Toncheva Shahlo Turdikulova Ingrida Uktveryte Olga Utevska René Vasquez Mercedes Villena Mikhail Voevoda Cheryl A Winkler Levon Yepiskoposyan Pierre Zalloua Tatijana Zemunik Alan Cooper Cristian Capelli Mark G Thomas Andres Ruiz-Linares Sarah A Tishkoff Lalji Singh Kumarasamy Thangaraj Richard Villems David Comas Rem Sukernik Mait Metspalu Matthias Meyer Evan E Eichler Joachim Burger Montgomery Slatkin Svante Pääbo Janet Kelso David Reich Johannes Krause

Nature 2014 Sep;513(7518):409-13

1] Institute for Archaeological Sciences, University of Tübingen, Tübingen 72074, Germany. [2] Senckenberg Centre for Human Evolution and Palaeoenvironment, University of Tübingen, 72070 Tübingen, Germany. [3] Max Planck Institut für Geschichte und Naturwissenschaften, Jena 07745, Germany.

View Article

Download full-text PDF

Source
https://genetics.med.harvard.edu/reich/Reich_Lab/Welcome_fil
Web Search
http://biorxiv.org/content/biorxiv/early/2013/12/23/001552.f
Web Search
http://www.geo.uni-tuebingen.de/fileadmin/website/arbeitsber
Web Search
http://www.nature.com/doifinder/10.1038/nature13673
Publisher Site
http://dx.doi.org/10.1038/nature13673DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4170574PMC
September 2014

Reconstructing the DNA methylation maps of the Neandertal and the Denisovan.

Science 2014 May 17;344(6183):523-7. Epub 2014 Apr 17.

Department of Genetics, Alexander Silberman Institute of Life Sciences, Hebrew University of Jerusalem, Jerusalem 91904, Israel.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.1250368DOI Listing
May 2014

ISCB computational biology Wikipedia competition.

PLoS Comput Biol 2013 19;9(9):e1003242. Epub 2013 Sep 19.

European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.1003242DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3777890PMC
April 2014

Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans.

Nat Commun 2014 Apr 1;5:3584. Epub 2014 Apr 1.

1] CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai 200031, China [2] Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig 04103, Germany.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/ncomms4584
Publisher Site
http://dx.doi.org/10.1038/ncomms4584DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3988804PMC
April 2014

The genomic landscape of Neanderthal ancestry in present-day humans.

Nature 2014 Mar 29;507(7492):354-7. Epub 2014 Jan 29.

1] Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Broad Institute of Harvard and MIT, Cambridge, Massachusetts 02142, USA [3] Howard Hughes Medical Institute, Harvard Medical School, Boston, Massachusetts 02115, USA.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/nature12961
Publisher Site
http://dx.doi.org/10.1038/nature12961DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4072735PMC
March 2014

The earliest transcribed zygotic genes are short, newly evolved, and different across species.

Cell Rep 2014 Jan 16;6(2):285-92. Epub 2014 Jan 16.

Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstrasse 108, 01307 Dresden, Germany. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.celrep.2013.12.030DOI Listing
January 2014

freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers.

Bioinformatics 2013 May 6;29(9):1208-9. Epub 2013 Mar 6.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btt117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3634191PMC
May 2013

DNA analysis of an early modern human from Tianyuan Cave, China.

Proc Natl Acad Sci U S A 2013 Feb 22;110(6):2223-7. Epub 2013 Jan 22.

Chinese Academy of Sciences-Max Planck Society Joint Laboratory for Human Evolution, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, 100044 Beijing, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1221359110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3568306PMC
February 2013

High-throughput sequencing of the melanoma genome.

Exp Dermatol 2013 Jan 22;22(1):10-7. Epub 2012 Nov 22.

Department of Dermatology, Venereology and Allergology, University of Leipzig, Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/exd.12054DOI Listing
January 2013

Impact of ontology evolution on functional analyses.

Bioinformatics 2012 Oct 6;28(20):2671-7. Epub 2012 Sep 6.

Department of Computer Science, University of Leipzig, Leipzig, Germany.

View Article

Download full-text PDF

Source
http://bioinformatics.oxfordjournals.org/content/early/2012/
Web Search
http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/bts498DOI Listing
October 2012

Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference.

BMC Bioinformatics 2011 30;12 Suppl 13:S1. Epub 2011 Nov 30.

Department of Chemistry and Biomolecular Sciences and ARC Centre of Excellence in Bioinformatics, Macquarie University, Sydney NSW 2109, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-12-S13-S1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3278825PMC
August 2012

Transcription factors are targeted by differentially expressed miRNAs in primates.

Genome Biol Evol 2012 27;4(4):552-64. Epub 2012 Mar 27.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/gbe/evs033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3342879PMC
July 2012

Annotation of primate miRNAs by high throughput sequencing of small RNA libraries.

BMC Genomics 2012 Mar 27;13:116. Epub 2012 Mar 27.

Max Planck Institute for Evolutionary Anthropology, Department of Evolutionary Genetics, Deutscher Platz 6, Leipzig 04103, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-13-116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3328248PMC
March 2012

Deep proteome and transcriptome mapping of a human cancer cell line.

Mol Syst Biol 2011 Nov 8;7:548. Epub 2011 Nov 8.

Department for Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany.

View Article

Download full-text PDF

Source
http://msb.embopress.org/cgi/doi/10.1038/msb.2011.81
Publisher Site
http://dx.doi.org/10.1038/msb.2011.81DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3261714PMC
November 2011

InCoB celebrates its tenth anniversary as first joint conference with ISCB-Asia.

BMC Genomics 2011 Nov 30;12 Suppl 3:S1. Epub 2011 Nov 30.

Department of Bioscience and Bioinformatics, Graduate School of Computer Science and Systems Engineering, Kyushu Institute of Technology, Fukuoka 820-8502, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-12-S3-S1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3333168PMC
November 2011

OBML - Ontologies in Biomedicine and Life Sciences.

J Biomed Semantics 2011 Aug 9;2 Suppl 4:I1. Epub 2011 Aug 9.

Institute for Medical Informatics, Statistics and Epidemiology (IMISE), University of Leipzig, Haertelstrasse 16-18, 04107 Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2041-1480-2-S4-I1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3194167PMC
August 2011

Addressing challenges in the production and analysis of illumina sequencing data.

BMC Genomics 2011 Jul 29;12:382. Epub 2011 Jul 29.

Max Planck Institute for Evolutionary Anthropology, Department of Evolutionary Genetics Deutscher Platz 6 04103 Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-12-382DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3163567PMC
July 2011

Computational challenges in the analysis of ancient DNA.

Genome Biol 2010 6;11(5):R47. Epub 2010 May 6.

Max-Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gb-2010-11-5-r47DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2898072PMC
September 2010

Relations as patterns: bridging the gap between OBO and OWL.

BMC Bioinformatics 2010 Aug 31;11:441. Epub 2010 Aug 31.

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-11-441DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2942855PMC
August 2010

High-throughput DNA sequencing--concepts and limitations.

Bioessays 2010 Jun;32(6):524-36

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/bies.200900181DOI Listing
June 2010

Statistical tests for associations between two directed acyclic graphs.

PLoS One 2010 Jun 16;5(6):e10996. Epub 2010 Jun 16.

Research Group Ontologies in Medicine, Institute for Medical Informatics, Statistics and Epidemiology, University of Leipzig, Leipzig, Germany.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0010996PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2886832PMC
June 2010

Applying the functional abnormality ontology pattern to anatomical functions.

J Biomed Semantics 2010 Mar 31;1(1). Epub 2010 Mar 31.

Institute for Medical Informatics, Statistics and Epidemiology, University of Leipzig, Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2041-1480-1-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2895731PMC
March 2010

The ontology of biological sequences.

BMC Bioinformatics 2009 Nov 18;10:377. Epub 2009 Nov 18.

Research Group Ontologies in Medicine, Institute for Medical Informatics, Statistics and Epidemiology, University of Leipzig, Haertelstrasse 16-18, 04107 Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-10-377DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2785798PMC
November 2009

Improved base calling for the Illumina Genome Analyzer using machine learning strategies.

Genome Biol 2009 14;10(8):R83. Epub 2009 Aug 14.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz, 04103 Leipzig, Germany.

View Article

Download full-text PDF

Source
http://link.springer.com/content/pdf/10.1186/gb-2009-10-8-r8
Web Search
http://genomebiology.biomedcentral.com/articles/10.1186/gb-2
Publisher Site
http://dx.doi.org/10.1186/gb-2009-10-8-r83DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2745764PMC
October 2009

BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology.

BMC Bioinformatics 2009 May 6;10 Suppl 5:S5. Epub 2009 May 6.

Department of Computer Science, Faculty of Mathematics and Computer Science, University of Leipzig, Johannisgasse 26, 04103 Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-10-S5-S5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2679405PMC
May 2009

Transcriptional neoteny in the human brain.

Proc Natl Acad Sci U S A 2009 Apr 23;106(14):5743-8. Epub 2009 Mar 23.

Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.0900544106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2659716PMC
April 2009

DATABASE: A new forum for biological databases and curation.

Database (Oxford) 2009 16;2009:bap002. Epub 2009 Mar 16.

Potomac, MD, USA, Seattle, WA, USA, Leipzig, Germany and Toronto, ON, Canada.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/database/bap002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2790300PMC
March 2009

PatMaN: rapid alignment of short sequences to large databases.

Bioinformatics 2008 Jul 8;24(13):1530-1. Epub 2008 May 8.

Max-Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btn223DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2718670PMC
July 2008

Population transcriptomics of life-history variation in the genus Salmo.

Mol Ecol 2008 Jul 3;17(13):3095-108. Epub 2008 Jun 3.

CMPG, Zoological Institute, University of Bern, Baltzerstrasse 6, CH-3012 Bern, Switzerland.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1111/j.1365-294X.2008.03820.x
Publisher Site
http://dx.doi.org/10.1111/j.1365-294X.2008.03820.xDOI Listing
July 2008

Representing default knowledge in biomedical ontologies: application to the integration of anatomy and phenotype ontologies.

BMC Bioinformatics 2007 Oct 9;8:377. Epub 2007 Oct 9.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.

View Article

Download full-text PDF

Source
http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
Publisher Site
http://dx.doi.org/10.1186/1471-2105-8-377DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2180186PMC
October 2007

Patterns of damage in genomic DNA sequences from a Neandertal.

Proc Natl Acad Sci U S A 2007 Sep 21;104(37):14616-21. Epub 2007 Aug 21.

Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, D-04103 Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.0704665104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1976210PMC
September 2007

A splice variant of the human CCA-adding enzyme with modified activity.

J Mol Biol 2007 Mar 12;366(4):1258-65. Epub 2006 Dec 12.

University of Leipzig, Institute for Biochemistry, Brüderstrasse 34, D-04103 Leipzig, Germany.

View Article

Download full-text PDF

Source
http://linkinghub.elsevier.com/retrieve/pii/S002228360601675
Publisher Site
http://dx.doi.org/10.1016/j.jmb.2006.12.016DOI Listing
March 2007

Comparison of protein and mRNA expression evolution in humans and chimpanzees.

PLoS One 2007 Feb 14;2(2):e216. Epub 2007 Feb 14.

Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000216PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1789144PMC
February 2007

Identifying genes underlying skin pigmentation differences among human populations.

Hum Genet 2007 Jan 15;120(5):613-21. Epub 2006 Sep 15.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00439-006-0256-4DOI Listing
January 2007

A top-level ontology of functions and its application in the Open Biomedical Ontologies.

Bioinformatics 2006 Jul;22(14):e66-73

Department of Computer Science, Faculty of Mathematics and Computer Science, University of Leipzig, Augustusplatz 10-11, 04109 Leipzig.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btl266DOI Listing
July 2006

Integration of text- and data-mining using ontologies successfully selects disease gene candidates.

Nucleic Acids Res 2005 14;33(5):1544-52. Epub 2005 Mar 14.

South African National Bioinformatics Institute, University of the Western Cape Belville 7535, South Africa.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gki296DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1065256PMC
March 2005

Allele-specific transcript isoforms in human.

FEBS Lett 2004 Nov;577(1-2):233-8

Computational Biology Group, University of Cape Town, Rondebosch 7701, Cape Town, South Africa.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.febslet.2004.10.018DOI Listing
November 2004

Integrative annotation of 21,037 human genes validated by full-length cDNA clones.

Authors:
Tadashi Imanishi Takeshi Itoh Yutaka Suzuki Claire O'Donovan Satoshi Fukuchi Kanako O Koyanagi Roberto A Barrero Takuro Tamura Yumi Yamaguchi-Kabata Motohiko Tanino Kei Yura Satoru Miyazaki Kazuho Ikeo Keiichi Homma Arek Kasprzyk Tetsuo Nishikawa Mika Hirakawa Jean Thierry-Mieg Danielle Thierry-Mieg Jennifer Ashurst Libin Jia Mitsuteru Nakao Michael A Thomas Nicola Mulder Youla Karavidopoulou Lihua Jin Sangsoo Kim Tomohiro Yasuda Boris Lenhard Eric Eveno Yoshiyuki Suzuki Chisato Yamasaki Jun-ichi Takeda Craig Gough Phillip Hilton Yasuyuki Fujii Hiroaki Sakai Susumu Tanaka Clara Amid Matthew Bellgard Maria de Fatima Bonaldo Hidemasa Bono Susan K Bromberg Anthony J Brookes Elspeth Bruford Piero Carninci Claude Chelala Christine Couillault Sandro J de Souza Marie-Anne Debily Marie-Dominique Devignes Inna Dubchak Toshinori Endo Anne Estreicher Eduardo Eyras Kaoru Fukami-Kobayashi Gopal R Gopinath Esther Graudens Yoonsoo Hahn Michael Han Ze-Guang Han Kousuke Hanada Hideki Hanaoka Erimi Harada Katsuyuki Hashimoto Ursula Hinz Momoki Hirai Teruyoshi Hishiki Ian Hopkinson Sandrine Imbeaud Hidetoshi Inoko Alexander Kanapin Yayoi Kaneko Takeya Kasukawa Janet Kelso Paul Kersey Reiko Kikuno Kouichi Kimura Bernhard Korn Vladimir Kuryshev Izabela Makalowska Takashi Makino Shuhei Mano Regine Mariage-Samson Jun Mashima Hideo Matsuda Hans-Werner Mewes Shinsei Minoshima Keiichi Nagai Hideki Nagasaki Naoki Nagata Rajni Nigam Osamu Ogasawara Osamu Ohara Masafumi Ohtsubo Norihiro Okada Toshihisa Okido Satoshi Oota Motonori Ota Toshio Ota Tetsuji Otsuki Dominique Piatier-Tonneau Annemarie Poustka Shuang-Xi Ren Naruya Saitou Katsunaga Sakai Shigetaka Sakamoto Ryuichi Sakate Ingo Schupp Florence Servant Stephen Sherry Rie Shiba Nobuyoshi Shimizu Mary Shimoyama Andrew J Simpson Bento Soares Charles Steward Makiko Suwa Mami Suzuki Aiko Takahashi Gen Tamiya Hiroshi Tanaka Todd Taylor Joseph D Terwilliger Per Unneberg Vamsi Veeramachaneni Shinya Watanabe Laurens Wilming Norikazu Yasuda Hyang-Sook Yoo Marvin Stodolsky Wojciech Makalowski Mitiko Go Kenta Nakai Toshihisa Takagi Minoru Kanehisa Yoshiyuki Sakaki John Quackenbush Yasushi Okazaki Yoshihide Hayashizaki Winston Hide Ranajit Chakraborty Ken Nishikawa Hideaki Sugawara Yoshio Tateno Zhu Chen Michio Oishi Peter Tonellato Rolf Apweiler Kousaku Okubo Lukas Wagner Stefan Wiemann Robert L Strausberg Takao Isogai Charles Auffray Nobuo Nomura Takashi Gojobori Sumio Sugano

PLoS Biol 2004 Jun 20;2(6):e162. Epub 2004 Apr 20.

Integrated Database Group, Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pbio.0020162DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC393292PMC
June 2004

Application of eVOC: controlled vocabularies for unifying gene expression data.

C R Biol 2003 Oct-Nov;326(10-11):1089-96

South African National Bioinformatics Institute, University of the Western Cape, Bellville, 7535, South Africa.

View Article

Download full-text PDF

Source
May 2004

The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags.

Authors:
Helena Brentani Otávia L Caballero Anamaria A Camargo Aline M da Silva Wilson Araújo da Silva Emmanuel Dias Neto Marco Grivet Arthur Gruber Pedro Edson Moreira Guimaraes Winston Hide Christian Iseli C Victor Jongeneel Janet Kelso Maria Aparecida Nagai Elida Paula Benquique Ojopi Elisson C Osorio Eduardo M R Reis Gregory J Riggins Andrew John George Simpson Sandro de Souza Brian J Stevenson Robert L Strausberg Eloiza H Tajara Sergio Verjovski-Almeida Marcio Luis Acencio Mário Henrique Bengtson Fabiana Bettoni Walter F Bodmer Marcelo R S Briones Luiz Paulo Camargo Webster Cavenee Janete M Cerutti Luis Eduardo Coelho Andrade Paulo César Costa dos Santos Maria Cristina Ramos Costa Israel Tojal da Silva Marcos Roberto H Estécio Karine Sa Ferreira Frank B Furnari Milton Faria Pedro A F Galante Gustavo S Guimaraes Adriano Jesus Holanda Edna Teruko Kimura Maarten R Leerkes Xin Lu Rui M B Maciel Elizabeth A L Martins Katlin Brauer Massirer Analy S A Melo Carlos Alberto Mestriner Elisabete Cristina Miracca Leandro Lorenco Miranda Francisco G Nobrega Paulo S Oliveira Apua C M Paquola José Rodrigo C Pandolfi Maria Ines de Moura Campos Pardini Fabio Passetti John Quackenbush Beatriz Schnabel Mari Cleide Sogayar Jorge E Souza Sandro R Valentini Andre C Zaiats Elisabete Jorge Amaral Liliane A T Arnaldi Amelia Goes de Araújo Simone Aparecida de Bessa David C Bicknell Maria Eugenia Ribeiro de Camaro Dirce Maria Carraro Helaine Carrer Alex F Carvalho Christian Colin Fernando Costa Cyntia Curcio Ismael Dale Cotrim Guerreiro da Silva Neusa Pereira da Silva Márcia Dellamano Hamza El-Dorry Enilza Maria Espreafico Ari José Scattone Ferreira Cristiane Ayres Ferreira Maria Angela H Z Fortes Angelita Habr Gama Daniel Giannella-Neto Maria Lúcia C C Giannella Ricardo R Giorgi Gustavo Henrique Goldman Maria Helena S Goldman Christine Hackel Paulo Lee Ho Elza Myiuki Kimura Luiz Paulo Kowalski Jose E Krieger Luciana C C Leite Ademar Lopes Ana Mercedes S C Luna Alan Mackay Suely Kazue Nagahashi Mari Adriana Aparecida Marques Waleska K Martins André Montagnini Mario Mourão Neto Ana Lucia T O Nascimento A Munro Neville Marina P Nobrega Mike J O'Hare Audrey Yumi Otsuka Anna Izabel Ruas de Melo Maria Luisa Paco-Larson Gonçalo Guimarães Pereira Neusa Pereira da Silva Joao Bosco Pesquero Juliana Gilbert Pessoa Paula Rahal Claudia Aparecida Rainho Vanderlei Rodrigues Silvia Regina Rogatto Camila Malta Romano Janaina Gusmao Romeiro Benedito Mauro Rossi Monica Rusticci Renata Guerra de Sá Simone Cristina Sant' Anna Miriam L Sarmazo Teresa Cristina de Lima E Silva Fernando Augusto Soares Maria de Fátima Sonati Josane de Freitas Sousa Diana Queiroz Valéria Valente André Luiz Vettore Fabiola Elizabeth Villanova Marco Antonio Zago Heloisa Zalcberg

Proc Natl Acad Sci U S A 2003 Nov 30;100(23):13418-23. Epub 2003 Oct 30.

Laboratorio de Genética Molecular do Cancer, Departmento de Radiologia, Universidade de São Paulo, Travessa da Rua Dr. Ovídeo Pires de Campos S/N, 4deg, Brazil.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1233632100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC263829PMC
November 2003

Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set.

Genome Res 2002 Dec;12(12):1999-2003

Developmental Genomics and Aging Section, Laboratory of Genetics, National Institute on Aging (NIA), National Institutes of Health, Baltimore, Maryland, 20892, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.633802DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC187561PMC
December 2002

Impact of the presence of paralogs on sequence divergence in a set of mouse-human orthologs.

Genome Res 2002 Sep;12(9):1370-6

South African National Bioinformatics Institute, University of the Western Cape, Bellville 7535, Cape Town, South Africa.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.270902DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC186655PMC
September 2002