Publications by authors named "Jan M Ruijter"

80 Publications

Removal of artifact bias from qPCR results using DNA melting curve analysis.

FASEB J 2019 12 2;33(12):14542-14555. Epub 2019 Nov 2.

Department of Medical Biology, Amsterdam University Medical Centers, Academic Medical Center (AMC), Amsterdam, The Netherlands.

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December 2019

Comment on 'A DNA extraction method for small quantities of bone for high-qualitygenotyping' by Caputo et al.

Forensic Sci Int Genet 2019 05 31;40:e243-e244. Epub 2019 Jan 31.

Ars Cogniscendi Centre for Legal and Forensic medicine, Wezep, the Netherlands; Maastricht University, Maastricht, The Netherlands.

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May 2019

Considerations for Measurement of Embryonic Organ Growth.

Anat Rec (Hoboken) 2019 01 5;302(1):49-57. Epub 2018 Oct 5.

Department of Medical Biology, Amsterdam University Medical Centers, Academic Medical Center, Amsterdam, The Netherlands.

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January 2019

Interfering With DNA Decondensation as a Strategy Against Mycobacteria.

Front Microbiol 2018 5;9:2034. Epub 2018 Sep 5.

Electron Microscopy Center Amsterdam, Academic Medical Center, Amsterdam UMC, University of Amsterdam, Amsterdam, Netherlands.

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September 2018

Paradoxical effects of mutant ubiquitin on Aβ plaque formation in an Alzheimer mouse model.

Neurobiol Aging 2018 12 18;72:62-71. Epub 2018 Aug 18.

Department of Psychiatry and Neuropsychology, Faculty of Health Medicine and Life Sciences, Maastricht University, Maastricht, The Netherlands. Electronic address:

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December 2018

Amplification of nonspecific products in quantitative polymerase chain reactions (qPCR).

Biomol Detect Quantif 2017 Dec 1;14:7-18. Epub 2017 Nov 1.

Academic Medical Center, Department of Medical Biology, Meibergdreef 15, 1105AZ Amsterdam, The Netherlands.

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December 2017

Maternal diabetes causes developmental delay and death in early-somite mouse embryos.

Sci Rep 2017 09 15;7(1):11714. Epub 2017 Sep 15.

Tytgat Institute for Liver and Intestinal Research, Academic Medical Center, Amsterdam, Netherlands.

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September 2017

Deletion of Fstl1 (Follistatin-Like 1) From the Endocardial/Endothelial Lineage Causes Mitral Valve Disease.

Arterioscler Thromb Vasc Biol 2017 09 13;37(9):e116-e130. Epub 2017 Jul 13.

From the Department of Medical Biology, Academic Medical Center, Amsterdam, The Netherlands (S.P., M.S., F.R., Q.D.G., J.M.R., M.J.B.v.d.H.); Cardiovascular Imaging Laboratory, Centro Nacional de Investigación Cardiovascular, Madrid, Spain (L.J.J.B., L.F.R.); and Intercellular Signaling in Cardiovascular Development and Disease Laboratory, Centro Nacional de Investigación Cardiovascular, Madrid, Spain (J.-L.d.l.P.).

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September 2017

The effect of repeated freeze-thaw cycles on human muscle tissue visualized by postmortem computed tomography (PMCT).

Clin Anat 2017 Sep 19;30(6):799-804. Epub 2017 Jun 19.

Department of Anatomy, Embryology and Physiology, Academic Medical Center, University of Amsterdam, 1105, AZ Amsterdam, The Netherlands.

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September 2017

Luminescence of thermally altered human skeletal remains.

Int J Legal Med 2017 Jul 23;131(4):1165-1177. Epub 2017 Feb 23.

Department of Anatomy, Embryology and Physiology, Academic Medical Centre, University of Amsterdam, Meibergdreef 15, 1105 AZ, Amsterdam, The Netherlands.

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July 2017

The geometrical precision of virtual bone models derived from clinical computed tomography data for forensic anthropology.

Int J Legal Med 2017 Jul 10;131(4):1155-1163. Epub 2017 Feb 10.

Department of Biomedical Engineering and Physics, Academic Medical Centre, University of Amsterdam, P.O. Box 22660, 1100 DD, Amsterdam, The Netherlands.

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July 2017

Reference genes for gene expression studies in the mouse heart.

Sci Rep 2017 02 2;7(1):24. Epub 2017 Feb 2.

Department of Anatomy, Embryology and Physiology, Academic Medical Center, Amsterdam, The Netherlands.

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February 2017

Pivotal role of glutamine synthetase in ammonia detoxification.

Hepatology 2017 01 12;65(1):281-293. Epub 2016 Nov 12.

Tytgat Institute for Liver and Intestinal Research, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.

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January 2017

Removal of between-run variation in a multi-plate qPCR experiment.

Biomol Detect Quantif 2015 Sep 30;5:10-4. Epub 2015 Jul 30.

Department of Anatomy, Embryology and Physiology, Academic Medical Centre, University of Amsterdam, Amsterdam, The Netherlands.

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September 2015

Identification of a regulatory domain controlling the Nppa-Nppb gene cluster during heart development and stress.

Development 2016 06 5;143(12):2135-46. Epub 2016 Apr 5.

Department of Anatomy, Embryology and Physiology, Academic Medical Center, Meibergdreef 9, Amsterdam 1105 AZ, The Netherlands

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June 2016

EMERGE: a flexible modelling framework to predict genomic regulatory elements from genomic signatures.

Nucleic Acids Res 2016 Mar 3;44(5):e42. Epub 2015 Nov 3.

Department of Anatomy, Embryology & Physiology, Academic Medical Centre, Meibergdreef 15, 1105AZ Amsterdam, The Netherlands

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March 2016

RDML-Ninja and RDMLdb for standardized exchange of qPCR data.

BMC Bioinformatics 2015 Jun 20;16:197. Epub 2015 Jun 20.

Genomics Core Facility, European Molecular Biology Laboratory, Heidelberg, 69117, Germany.

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June 2015

Integrating multi-scale knowledge on cardiac development into a computational model of ventricular trabeculation.

Wiley Interdiscip Rev Syst Biol Med 2014 Nov-Dec;6(6):389-97. Epub 2014 Oct 6.

Department of Anatomy, Embryology and Physiology, Academic Medical Center, Amsterdam, The Netherlands.

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June 2015

Fluorescent-increase kinetics of different fluorescent reporters used for qPCR depend on monitoring chemistry, targeted sequence, type of DNA input and PCR efficiency.

Mikrochim Acta 2014 14;181(13-14):1689-1696. Epub 2014 Jan 14.

Department of Anatomy, Embryology & Physiology, Academic Medical Center, Meibergdreef 15, 1105AZ Amsterdam, The Netherlands.

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January 2014

OccuPeak: ChIP-Seq peak calling based on internal background modelling.

PLoS One 2014 17;9(6):e99844. Epub 2014 Jun 17.

Department of Anatomy, Embryology & Physiology, Academic Medical Centre, Amsterdam, The Netherlands.

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February 2015

Gene regulatory elements of the cardiac conduction system.

Brief Funct Genomics 2014 Jan 22;13(1):28-38. Epub 2013 Aug 22.

Department of Anatomy, Embryology & Physiology, Academic Medical Centre, L2-108, Meibergdreef 15, 1105 AZ Amsterdam, the Netherlands. Tel.: + 31 20 5667821; Fax: + 31 20 6976177;

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January 2014

Image cytometry: protocols for 2D and 3D quantification in microscopic images.

Prog Histochem Cytochem 2013 Jan 10;47(4):211-333. Epub 2012 Nov 10.

Center for Applied Biomedical Research, S. Orsola-Malpighi University Hospital, Via Massarenti 9, I-40138 Bologna, Italy.

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January 2013

Growth of the developing mouse heart: an interactive qualitative and quantitative 3D atlas.

Dev Biol 2012 Aug 14;368(2):203-13. Epub 2012 May 14.

Heart Failure Research Center, Academic Medical Center, Amsterdam, The Netherlands.

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August 2012