Publications by authors named "Jan Komorowski"

100Publications

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.

Nature 2020 02 5;578(7793):102-111. Epub 2020 Feb 5.

The Broad Institute of MIT and Harvard, Cambridge, MA, USA.

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http://dx.doi.org/10.1038/s41586-020-1965-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7054214PMC
February 2020

Pan-cancer analysis of whole genomes.

Authors:

Nature 2020 02 5;578(7793):82-93. Epub 2020 Feb 5.

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http://dx.doi.org/10.1038/s41586-020-1969-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7025898PMC
February 2020

Analyzing DNA methylation patterns in subjects diagnosed with schizophrenia using machine learning methods.

J Psychiatr Res 2019 07 2;114:41-47. Epub 2019 Apr 2.

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00223956183139
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http://dx.doi.org/10.1016/j.jpsychires.2019.04.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7416578PMC
July 2019

Special Issue Introduction: The Wonders and Mysteries Next Generation Sequencing Technologies Help Reveal.

Genes (Basel) 2018 Oct 18;9(10). Epub 2018 Oct 18.

Department of Cell and Molecular Biology, Uppsala University, 752 36 Uppsala, Sweden.

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http://dx.doi.org/10.3390/genes9100505DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6210603PMC
October 2018

[Quality of life in patients with orbitopathy - single center experience].

Pol Merkur Lekarski 2018 Jun;44(264):272-275

Department of Clinical Endocrinology, Medical University of Lodz, Poland.

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June 2018

Estimation of vitamin D status in patients with secondary and primary hypothyroidism of different etiology.

Neuro Endocrinol Lett 2018 Feb;38(8):565-564

Department of Immunoendocrinology, Chair of Endocrinology, Medical University of Lodz, Poland.

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February 2018

Alteration in the serum concentrations of FGF19, FGFR4 and βKlotho in patients with thyroid cancer.

Cytokine 2018 05 10;105:32-36. Epub 2018 Feb 10.

Department of Immunoendocrinology, Chair of Endocrinology, Medical University of Lodz, Sterlinga 3, 91-425 Lodz, Poland.

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http://dx.doi.org/10.1016/j.cyto.2018.02.013DOI Listing
May 2018

PiiL: visualization of DNA methylation and gene expression data in gene pathways.

BMC Genomics 2017 08 2;18(1):571. Epub 2017 Aug 2.

Department of Medical Biochemistry and Microbiology/BILS, Genomics, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1186/s12864-017-3950-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5541427PMC
August 2017

Risk stratification in cervical cancer screening by complete screening history: Applying bioinformatics to a general screening population.

Int J Cancer 2017 07 24;141(1):200-209. Epub 2017 Apr 24.

Department of Cell and Molecular Biology, Uppsala University, Uppsala, Uppsala County, Sweden.

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http://dx.doi.org/10.1002/ijc.30725DOI Listing
July 2017

Elevated Concentrations of SERPINE2/Protease Nexin-1 and Secretory Leukocyte Protease Inhibitor in the Serum of Patients with Papillary Thyroid Cancer.

Dis Markers 2017 31;2017:4962137. Epub 2017 Jan 31.

Department of Immunoendocrinology, Chair of Endocrinology, Medical University of Lodz, Sterlinga 3, 91-425 Lodz, Poland.

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http://dx.doi.org/10.1155/2017/4962137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5306996PMC
March 2017

Maps of context-dependent putative regulatory regions and genomic signal interactions.

Nucleic Acids Res 2016 Nov 12;44(19):9110-9120. Epub 2016 Sep 12.

Department of Cell and Molecular Biology, Uppsala University, Uppsala SE-751-24, Sweden

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http://dx.doi.org/10.1093/nar/gkw800DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5100580PMC
November 2016

Combinatorial identification of DNA methylation patterns over age in the human brain.

BMC Bioinformatics 2016 Sep 23;17(1):393. Epub 2016 Sep 23.

Department of Cell and Molecular Biology, Computational and Systems Biology, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1186/s12859-016-1259-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5034667PMC
September 2016

Identification of combinatorial host-specific signatures with a potential to affect host adaptation in influenza A H1N1 and H3N2 subtypes.

BMC Genomics 2016 Jul 29;17:529. Epub 2016 Jul 29.

Department of Cell and Molecular Biology, Computational Biology and Bioinformatics, Science for Life Laboratory, Uppsala University, SE-751 24, Uppsala, Sweden.

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http://dx.doi.org/10.1186/s12864-016-2919-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4966792PMC
July 2016

A Significant Regulatory Mutation Burden at a High-Affinity Position of the CTCF Motif in Gastrointestinal Cancers.

Hum Mutat 2016 09 2;37(9):904-13. Epub 2016 Jun 2.

Science for Life Laboratory, Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, SE-751 08, Sweden.

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http://dx.doi.org/10.1002/humu.23014DOI Listing
September 2016

Somatostatin Analogs and Tumor Localization Do Not Influence Vitamin D Concentration in Patients with Neuroendocrine Tumors.

Nutr Cancer 2016 30;68(3):428-34. Epub 2016 Mar 30.

a Department of Immunoendocrinology , Chair of Endocrinology, Medical University of Lodz , Lodz , Poland.

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http://dx.doi.org/10.1080/01635581.2016.1152387DOI Listing
January 2017

Ultrafiltration - an alternative method to polyethylene glycol precipitation for macroprolactin detection.

Arch Med Sci 2015 Oct;11(5):1001-7

Department of Neuroendocrinology, Interdepartmental Chair of Laboratory and Molecular Diagnostics, Medical University of Lodz, Lodz, Poland.

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http://dx.doi.org/10.5114/aoms.2015.54854DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4624744PMC
October 2015

Decreased serum level of IL-7 in patients with active Graves' disease.

Cytokine 2015 Oct 22;75(2):373-9. Epub 2015 Jun 22.

Department of Immunoendocrinology, Chair of Endocrinology, Medical University of Lodz, Sterlinga 3, 91-425 Lodz, Poland. Electronic address:

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http://dx.doi.org/10.1016/j.cyto.2015.04.020DOI Listing
October 2015

A complete map of potential pathogenicity markers of avian influenza virus subtype H5 predicted from 11 expressed proteins.

BMC Microbiol 2015 Jun 26;15:128. Epub 2015 Jun 26.

Department of Cell and Molecular Biology, Computational and Systems Biology, Science for Life Laboratory, Uppsala University, SE-751 24, Uppsala, Sweden.

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http://dx.doi.org/10.1186/s12866-015-0465-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4482282PMC
June 2015

Different distribution of histone modifications in genes with unidirectional and bidirectional transcription and a role of CTCF and cohesin in directing transcription.

BMC Genomics 2015 Apr 15;16:300. Epub 2015 Apr 15.

Science for Life Laboratory, Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, SE-751 08, Sweden.

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http://dx.doi.org/10.1186/s12864-015-1485-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4446127PMC
April 2015

Reduced plasma level of diazepam-binding inhibitor (DBI) in patients with morbid obesity.

Endocrine 2015 Aug 6;49(3):859-62. Epub 2015 Jan 6.

Department of Clinical Endocrinology, Medical University of Lodz, ul. Sterlinga 3, 91-425, Lodz, Poland,

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http://dx.doi.org/10.1007/s12020-014-0522-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4512568PMC
August 2015

Integration of genome-wide of Stat3 binding and epigenetic modification mapping with transcriptome reveals novel Stat3 target genes in glioma cells.

Biochim Biophys Acta 2014 Nov 8;1839(11):1341-50. Epub 2014 Aug 8.

Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden; Institute of Computer Science, Polish Academy of Sciences, Warszawa, Poland. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S18749399140019
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http://dx.doi.org/10.1016/j.bbagrm.2014.07.010DOI Listing
November 2014

Ciruvis: a web-based tool for rule networks and interaction detection using rule-based classifiers.

BMC Bioinformatics 2014 May 12;15:139. Epub 2014 May 12.

Department of Cell and Molecular Biology, Science for Life Laboratory, Uppsala University, 751 24 Uppsala, Sweden.

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http://dx.doi.org/10.1186/1471-2105-15-139DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4030460PMC
May 2014

Nucleosome regulatory dynamics in response to TGFβ.

Nucleic Acids Res 2014 Jun 25;42(11):6921-34. Epub 2014 Apr 25.

Science for Life Laboratory, Department of Immunology, Genetics and Pathology, BMC, Box 815, Uppsala University, SE-75108 Uppsala, Sweden

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gku326DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4066760PMC
June 2014

ChIP-seq in steatohepatitis and normal liver tissue identifies candidate disease mechanisms related to progression to cancer.

BMC Med Genomics 2013 Nov 8;6:50. Epub 2013 Nov 8.

Science for Life Laboratory, Department of Immunology, Genetics and Pathology, BMC, Uppsala University, PO BOX 815, Uppsala, SE 751 08, Sweden.

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http://dx.doi.org/10.1186/1755-8794-6-50DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3831757PMC
November 2013

Peak Finder Metaserver - a novel application for finding peaks in ChIP-seq data.

BMC Bioinformatics 2013 Sep 23;14:280. Epub 2013 Sep 23.

Department of Cell and Molecular Biology, Uppsala University, Husargatan 3, Uppsala, Sweden.

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http://dx.doi.org/10.1186/1471-2105-14-280DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3870998PMC
September 2013

Monte Carlo feature selection and rule-based models to predict Alzheimer's disease in mild cognitive impairment.

J Neural Transm (Vienna) 2012 Jul 10;119(7):821-31. Epub 2012 May 10.

Postgraduate School for Molecular Medicine, Żwirki i Wigury 61 Street, 02-091, Warsaw, Poland.

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http://dx.doi.org/10.1007/s00702-012-0812-0DOI Listing
July 2012

Elevated peripheral blood plasma concentrations of tie-2 and angiopoietin 2 in patients with neuroendocrine tumors.

Int J Mol Sci 2012 31;13(2):1444-60. Epub 2012 Jan 31.

Department of Immunoendocrinology, Chair of Endocrinology, Medical University of Lodz, Dr Sterling Str. No. 3, 91-425 Lodz, Poland; E-Mails: (G.M-M.); (A.N.); (E.M.); (H.L.).

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http://www.mdpi.com/1422-0067/13/2/1444
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http://dx.doi.org/10.3390/ijms13021444DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3291970PMC
July 2015

A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements.

Algorithms Mol Biol 2012 Jan 16;7(1). Epub 2012 Jan 16.

The Linnaeus Centre for Bioinformatics, Department of Cell and Molecular Biology, Science for Life Laboratory, Biomedical Center, Uppsala University, Box 598, SE-75124 Uppsala, Sweden.

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http://almob.biomedcentral.com/articles/10.1186/1748-7188-7-
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http://dx.doi.org/10.1186/1748-7188-7-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3371767PMC
January 2012

Combinations of histone modifications mark exon inclusion levels.

PLoS One 2012 5;7(1):e29911. Epub 2012 Jan 5.

The Linnaeus Centre for Bioinformatics, Department of Cell and Molecular Biology, Science for Life Laboratory, Biomedical Center, Uppsala University, Uppsala, Sweden.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0029911PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3252363PMC
May 2012

The detection of macroprolactin by precipitation and ultrafiltration methods.

Endokrynol Pol 2011 ;62(6):529-36

Department of Neuroendocrinology, Medical University of Lodz, Poland.

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April 2012

Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa.

BMC Cancer 2011 Oct 19;11:450. Epub 2011 Oct 19.

The Linnaeus Centre for Bioinformatics, Department of Cell and Molecular Biology, Science for Life Laboratory, Uppsala University, Sweden.

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http://dx.doi.org/10.1186/1471-2407-11-450DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3216894PMC
October 2011

Antineoplastic action of growth hormone-releasing hormone (GHRH) antagonists.

Recent Pat Anticancer Drug Discov 2012 Jan;7(1):56-63

Department of Immunoendocrinology, Chair of Endocrinology, Medical University of Lodz, Dr. Sterling 3 Str., 91-425, Lodz, Poland.

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http://dx.doi.org/10.2174/157489212798358010DOI Listing
January 2012

Systemic blood osteopontin, endostatin, and E-selectin concentrations after vertical banding surgery in severely obese adults.

Cytokine 2011 Jul 12;55(1):56-61. Epub 2011 Apr 12.

Department of Clinical Endocrinology, First Chair of Endocrinology, Medical University of Lodz, 91-425 Lodz, Sterlinga 1/3, Poland.

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http://dx.doi.org/10.1016/j.cyto.2011.03.020DOI Listing
July 2011

Serum vascular endothelial growth factor (VEGF) is elevated in GH deficient adults.

Growth Horm IGF Res 2011 Apr 29;21(2):96-101. Epub 2011 Mar 29.

Department of Endocrinology, Christie Hospital, Manchester, UK.

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http://dx.doi.org/10.1016/j.ghir.2011.02.002DOI Listing
April 2011

Computational Analysis of Molecular Interaction Networks Underlying Change of HIV-1 Resistance to Selected Reverse Transcriptase Inhibitors.

Bioinform Biol Insights 2010 Dec 12;4:137-46. Epub 2010 Dec 12.

The Linnaeus Centre for Bioinformatics, Uppsala University, 751-24 Uppsala, Sweden.

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http://dx.doi.org/10.4137/BBI.S6247DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3020081PMC
December 2010

Growth hormone-releasing hormone stimulates the secretion of interleukin 17 from human peripheral blood mononuclear cells in vitro.

Neuro Endocrinol Lett 2010 ;31(6):852-6

Department of General and Endocrinological Surgery, Copernicus Memorial Hospital, Pabianicka Street 62, 93-513 Lodz, Poland.

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March 2011

SICTIN: Rapid footprinting of massively parallel sequencing data.

BioData Min 2010 Aug 13;3(1). Epub 2010 Aug 13.

Department of Cell and Molecular Biology, The Linnaeus Centre for Bioinformatics, Uppsala University, Box 598, SE-75124 Uppsala, Sweden.

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http://dx.doi.org/10.1186/1756-0381-3-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2928217PMC
August 2010

Decreased 1-25 dihydroxyvitamin D3 concentration in peripheral blood serum of patients with thyroid cancer.

Arch Med Res 2010 Apr;41(3):190-4

Departament of Endocrine and General Surgery, Medical University of Lodz, Copernicus Memorial Hospital, Lodz, Poland.

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http://linkinghub.elsevier.com/retrieve/pii/S018844091000076
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http://dx.doi.org/10.1016/j.arcmed.2010.04.004DOI Listing
April 2010

Serum concentrations of TNF α and its soluble receptors in patients with adrenal tumors treated by surgery.

Int J Mol Sci 2010 May 26;11(6):2281-90. Epub 2010 May 26.

Department of Clinical Endocrinology, First Chair of Endocrinology, Medical University of Lodz, Sterlinga1/3, 91-425 Lodz, Poland.

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http://dx.doi.org/10.3390/ijms11062281DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2904916PMC
May 2010

Integrative epigenomic and genomic analysis of malignant pheochromocytoma.

Exp Mol Med 2010 Jul;42(7):484-502

Department of Surgical Sciences, Uppsala University, Uppsala University Hospital, SE-75185 Uppsala, Sweden.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2912476PMC
http://dx.doi.org/10.3858/emm.2010.42.7.050DOI Listing
July 2010

A Rough Set-Based Model of HIV-1 Reverse Transcriptase Resistome.

Bioinform Biol Insights 2009 Oct 5;3:109-27. Epub 2009 Oct 5.

The Linnaeus Centre for Bioinformatics, Uppsala University BMC, Box 598, Husargatan 3, SE-751 24 Uppsala, Sweden.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808174PMC
http://dx.doi.org/10.4137/bbi.s3382DOI Listing
October 2009

Focal amplifications are associated with high grade and recurrences in stage Ta bladder carcinoma.

Int J Cancer 2010 Mar;126(6):1390-402

Department of Genetics and Pathology, Rudbeck Laboratory, Uppsala University, SE-75185 Uppsala, Sweden.

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http://dx.doi.org/10.1002/ijc.24954DOI Listing
March 2010

Stimulatory effect of growth hormone-releasing hormone (GHRH(1-29)NH2) on the proliferation, VEGF and chromogranin A secretion by human neuroendocrine tumor cell line NCI-H727 in vitro.

Neuropeptides 2009 Oct 10;43(5):397-400. Epub 2009 Sep 10.

Department of General and Endocrinological Surgery, Copernicus Memorial Hospital, Pabianicka Street 62, 93-513 Lodz, Poland.

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http://dx.doi.org/10.1016/j.npep.2009.08.005DOI Listing
October 2009

Nucleosomes are well positioned in exons and carry characteristic histone modifications.

Genome Res 2009 Oct 17;19(10):1732-41. Epub 2009 Aug 17.

The Linnaeus Centre for Bioinformatics, Uppsala University, Sweden.

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http://dx.doi.org/10.1101/gr.092353.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2765275PMC
October 2009

A comprehensive analysis of the structure-function relationship in proteins based on local structure similarity.

PLoS One 2009 Jul 15;4(7):e6266. Epub 2009 Jul 15.

The Linnaeus Centre for Bioinformatics, Uppsala University and The Swedish University for Agricultural Sciences, Uppsala, Sweden.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0006266PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2705683PMC
July 2009

Proteochemometrics mapping of the interaction space for retroviral proteases and their substrates.

Bioorg Med Chem 2009 Jul 23;17(14):5229-37. Epub 2009 May 23.

Department of Pharmaceutical Biosciences, Uppsala University, Husargatan 3, SE-75124, Uppsala, Sweden.

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http://dx.doi.org/10.1016/j.bmc.2009.05.045DOI Listing
July 2009

Identification of candidate regulatory SNPs by combination of transcription-factor-binding site prediction, SNP genotyping and haploChIP.

Nucleic Acids Res 2009 Jul 18;37(12):e85. Epub 2009 May 18.

The Linnaeus Centre for Bioinformatics, Uppsala University, Sweden.

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http://dx.doi.org/10.1093/nar/gkp381DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2709586PMC
July 2009

Histone H3 lysine 27 trimethylation in adult differentiated colon associated to cancer DNA hypermethylation.

Epigenetics 2009 Feb 1;4(2):107-13. Epub 2009 Mar 1.

Department of Genetics and Pathology, Rudbeck Laboratory, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.4161/epi.4.2.8038DOI Listing
February 2009

Combinatorial control of gene expression by the three yeast repressors Mig1, Mig2 and Mig3.

BMC Genomics 2008 Dec 16;9:601. Epub 2008 Dec 16.

The Linnaeus Centre for Bioinformatics, Uppsala University, Box 598, SE-751 24 Uppsala, Sweden.

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http://dx.doi.org/10.1186/1471-2164-9-601DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2631581PMC
December 2008

Gene expression trends and protein features effectively complement each other in gene function prediction.

Bioinformatics 2009 Feb 2;25(3):322-30. Epub 2008 Dec 2.

Department of Plant Systems Biology, VIB Technologiepark 927, 9052 Gent, Belgium.

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http://dx.doi.org/10.1093/bioinformatics/btn625DOI Listing
February 2009

Overexpression of the angiogenic tetrapeptide AcSDKP in human malignant tumors.

Anticancer Res 2008 Sep-Oct;28(5A):2813-7

Institut de Chimie des Substances Naturelles, Centre National de la Recherche Scientifique, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France.

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December 2008

Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation.

Mol Cell 2008 Oct;32(2):232-46

Department of Genetics and Pathology, Dag Hammarskjölds Väg 20, Rudbeck Laboratory, Uppsala University, 751 85 Uppsala, Sweden.

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http://dx.doi.org/10.1016/j.molcel.2008.08.022DOI Listing
October 2008

Generalized proteochemometric model of multiple cytochrome p450 enzymes and their inhibitors.

J Chem Inf Model 2008 Sep 12;48(9):1840-50. Epub 2008 Aug 12.

Department of Pharmaceutical Biosciences, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1021/ci8000953DOI Listing
September 2008

Inhibition of proliferation, VEGF secretion of human neuroendocrine tumor cell line NCI-H727 by an antagonist of growth hormone-releasing hormone (GH-RH) in vitro.

Cancer Lett 2008 Sep 16;268(1):120-8. Epub 2008 May 16.

Department of Immunoendocrinology, Medical University of Lodz, Dr. Sterling 3 Street, 91-425 Lodz, Poland.

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http://dx.doi.org/10.1016/j.canlet.2008.03.041DOI Listing
September 2008

The place of somatostatin analogs in the diagnosis and treatment of the neuoroendocrine glands tumors.

Recent Pat Anticancer Drug Discov 2006 Jun;1(2):237-54

Department of Immunoendocrinology, Medical University of Lodz, 91-425 Lodz, Dr Sterling 3 Street, Lodz, Poland.

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http://dx.doi.org/10.2174/157489206777442197DOI Listing
June 2006

A segmental maximum a posteriori approach to genome-wide copy number profiling.

Bioinformatics 2008 Mar 19;24(6):751-8. Epub 2008 Jan 19.

The Linnaeus Centre for Bioinformatics, Uppsala University, 751 24 Uppsala, Sweden.

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http://dx.doi.org/10.1093/bioinformatics/btn003DOI Listing
March 2008

Effect of hyperprolactinaemia on Toxoplasma gondii prevalence in humans.

Parasitol Res 2008 Mar 20;102(4):723-9. Epub 2007 Dec 20.

Department of Immunoparasitology, Institute of Microbiology and Immunology, University of Łódź, ul. Banacha 12/16, 90-237 Łódź, Poland.

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http://dx.doi.org/10.1007/s00436-007-0824-0DOI Listing
March 2008

Monte Carlo feature selection for supervised classification.

Bioinformatics 2008 Jan 28;24(1):110-7. Epub 2007 Nov 28.

Institute of Computer Science, Polish Academy of Science, Ordona 21, PL-01-237 Warsaw, Poland.

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http://dx.doi.org/10.1093/bioinformatics/btm486DOI Listing
January 2008

Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors.

BMC Syst Biol 2007 Oct 16;1:45. Epub 2007 Oct 16.

The Linnaeus Centre for Bioinformatics, Uppsala University and Swedish University of Agricultural Sciences, Uppsala, Sweden.

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http://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0
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http://dx.doi.org/10.1186/1752-0509-1-45DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2200664PMC
October 2007

[Anti-cytokine and anti-lymphocyte monoclonal antibodies in the treatment of thyroid associated ophthalmopathy].

Pol Merkur Lekarski 2007 Jun;22(132):571-4

Uniwersytet Medyczny w Łodzi, Klinika Endokrynologii.

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June 2007

Relation of C-reactive protein to obesity, adipose tissue hormones and cardiovascular risk factors in men treated with early percutaneous intervention in course of acute myocardial infarction.

Neuro Endocrinol Lett 2007 Aug;28(4):427-32

1st Department of Cardiology, Medical University of Łódź, 1/3 Sterling Street, 91-425 Łódź, Poland.

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August 2007

A previously unrecognized microdeletion syndrome on chromosome 22 band q11.2 encompassing the BCR gene.

Am J Med Genet A 2007 Sep;143A(18):2178-84

Department of Genetics, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA.

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http://dx.doi.org/10.1002/ajmg.a.31882DOI Listing
September 2007

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Authors:
Ewan Birney John A Stamatoyannopoulos Anindya Dutta Roderic Guigó Thomas R Gingeras Elliott H Margulies Zhiping Weng Michael Snyder Emmanouil T Dermitzakis Robert E Thurman Michael S Kuehn Christopher M Taylor Shane Neph Christoph M Koch Saurabh Asthana Ankit Malhotra Ivan Adzhubei Jason A Greenbaum Robert M Andrews Paul Flicek Patrick J Boyle Hua Cao Nigel P Carter Gayle K Clelland Sean Davis Nathan Day Pawandeep Dhami Shane C Dillon Michael O Dorschner Heike Fiegler Paul G Giresi Jeff Goldy Michael Hawrylycz Andrew Haydock Richard Humbert Keith D James Brett E Johnson Ericka M Johnson Tristan T Frum Elizabeth R Rosenzweig Neerja Karnani Kirsten Lee Gregory C Lefebvre Patrick A Navas Fidencio Neri Stephen C J Parker Peter J Sabo Richard Sandstrom Anthony Shafer David Vetrie Molly Weaver Sarah Wilcox Man Yu Francis S Collins Job Dekker Jason D Lieb Thomas D Tullius Gregory E Crawford Shamil Sunyaev William S Noble Ian Dunham France Denoeud Alexandre Reymond Philipp Kapranov Joel Rozowsky Deyou Zheng Robert Castelo Adam Frankish Jennifer Harrow Srinka Ghosh Albin Sandelin Ivo L Hofacker Robert Baertsch Damian Keefe Sujit Dike Jill Cheng Heather A Hirsch Edward A Sekinger Julien Lagarde Josep F Abril Atif Shahab Christoph Flamm Claudia Fried Jörg Hackermüller Jana Hertel Manja Lindemeyer Kristin Missal Andrea Tanzer Stefan Washietl Jan Korbel Olof Emanuelsson Jakob S Pedersen Nancy Holroyd Ruth Taylor David Swarbreck Nicholas Matthews Mark C Dickson Daryl J Thomas Matthew T Weirauch James Gilbert Jorg Drenkow Ian Bell XiaoDong Zhao K G Srinivasan Wing-Kin Sung Hong Sain Ooi Kuo Ping Chiu Sylvain Foissac Tyler Alioto Michael Brent Lior Pachter Michael L Tress Alfonso Valencia Siew Woh Choo Chiou Yu Choo Catherine Ucla Caroline Manzano Carine Wyss Evelyn Cheung Taane G Clark James B Brown Madhavan Ganesh Sandeep Patel Hari Tammana Jacqueline Chrast Charlotte N Henrichsen Chikatoshi Kai Jun Kawai Ugrappa Nagalakshmi Jiaqian Wu Zheng Lian Jin Lian Peter Newburger Xueqing Zhang Peter Bickel John S Mattick Piero Carninci Yoshihide Hayashizaki Sherman Weissman Tim Hubbard Richard M Myers Jane Rogers Peter F Stadler Todd M Lowe Chia-Lin Wei Yijun Ruan Kevin Struhl Mark Gerstein Stylianos E Antonarakis Yutao Fu Eric D Green Ulaş Karaöz Adam Siepel James Taylor Laura A Liefer Kris A Wetterstrand Peter J Good Elise A Feingold Mark S Guyer Gregory M Cooper George Asimenos Colin N Dewey Minmei Hou Sergey Nikolaev Juan I Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham Haiyan Huang Nancy R Zhang Ian Holmes James C Mullikin Abel Ureta-Vidal Benedict Paten Michael Seringhaus Deanna Church Kate Rosenbloom W James Kent Eric A Stone Serafim Batzoglou Nick Goldman Ross C Hardison David Haussler Webb Miller Arend Sidow Nathan D Trinklein Zhengdong D Zhang Leah Barrera Rhona Stuart David C King Adam Ameur Stefan Enroth Mark C Bieda Jonghwan Kim Akshay A Bhinge Nan Jiang Jun Liu Fei Yao Vinsensius B Vega Charlie W H Lee Patrick Ng Atif Shahab Annie Yang Zarmik Moqtaderi Zhou Zhu Xiaoqin Xu Sharon Squazzo Matthew J Oberley David Inman Michael A Singer Todd A Richmond Kyle J Munn Alvaro Rada-Iglesias Ola Wallerman Jan Komorowski Joanna C Fowler Phillippe Couttet Alexander W Bruce Oliver M Dovey Peter D Ellis Cordelia F Langford David A Nix Ghia Euskirchen Stephen Hartman Alexander E Urban Peter Kraus Sara Van Calcar Nate Heintzman Tae Hoon Kim Kun Wang Chunxu Qu Gary Hon Rosa Luna Christopher K Glass M Geoff Rosenfeld Shelley Force Aldred Sara J Cooper Anason Halees Jane M Lin Hennady P Shulha Xiaoling Zhang Mousheng Xu Jaafar N S Haidar Yong Yu Yijun Ruan Vishwanath R Iyer Roland D Green Claes Wadelius Peggy J Farnham Bing Ren Rachel A Harte Angie S Hinrichs Heather Trumbower Hiram Clawson Jennifer Hillman-Jackson Ann S Zweig Kayla Smith Archana Thakkapallayil Galt Barber Robert M Kuhn Donna Karolchik Lluis Armengol Christine P Bird Paul I W de Bakker Andrew D Kern Nuria Lopez-Bigas Joel D Martin Barbara E Stranger Abigail Woodroffe Eugene Davydov Antigone Dimas Eduardo Eyras Ingileif B Hallgrímsdóttir Julian Huppert Michael C Zody Gonçalo R Abecasis Xavier Estivill Gerard G Bouffard Xiaobin Guan Nancy F Hansen Jacquelyn R Idol Valerie V B Maduro Baishali Maskeri Jennifer C McDowell Morgan Park Pamela J Thomas Alice C Young Robert W Blakesley Donna M Muzny Erica Sodergren David A Wheeler Kim C Worley Huaiyang Jiang George M Weinstock Richard A Gibbs Tina Graves Robert Fulton Elaine R Mardis Richard K Wilson Michele Clamp James Cuff Sante Gnerre David B Jaffe Jean L Chang Kerstin Lindblad-Toh Eric S Lander Maxim Koriabine Mikhail Nefedov Kazutoyo Osoegawa Yuko Yoshinaga Baoli Zhu Pieter J de Jong
June 2007

Proteochemometric analysis of small cyclic peptides' interaction with wild-type and chimeric melanocortin receptors.

Proteins 2007 Oct;69(1):83-96

Department of Pharmaceutical Biosciences, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1002/prot.21461DOI Listing
October 2007