Publications by authors named "Jamie A Davies"

100Publications

SynPharm and the guide to pharmacology database: A toolset for conferring drug control on engineered proteins.

Authors:
Jamie A Davies

Protein Sci 2020 Oct 12. Epub 2020 Oct 12.

Synthsys Centre for Systems and Synthetic Biology, Deanery of Biomedical Science, University of Edinburgh, Edinburgh, UK.

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http://dx.doi.org/10.1002/pro.3971DOI Listing
October 2020

Differentiation of a Contractile, Ureter-Like Tissue, from Embryonic Stem Cell-Derived Ureteric Bud and Mesenchyme.

J Am Soc Nephrol 2020 Oct 21;31(10):2253-2262. Epub 2020 Aug 21.

Deanery of Biomedical Science, University of Edinburgh, Edinburgh, UK.

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http://dx.doi.org/10.1681/ASN.2019101075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7609005PMC
October 2020

Optogenetic Downregulation of Protein Levels to Control Programmed Cell Death in Mammalian Cells with a Dual Blue-Light Switch.

Methods Mol Biol 2020 ;2173:159-170

Institute of Synthetic Biology, University of Düsseldorf, Düsseldorf, Germany.

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http://dx.doi.org/10.1007/978-1-0716-0755-8_11DOI Listing
January 2020

Engineering pattern formation and morphogenesis.

Biochem Soc Trans 2020 06;48(3):1177-1185

Deanery of Biomedical Sciences and Centre for Mammalian Synthetic Biology, University of Edinburgh, U.K.

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http://dx.doi.org/10.1042/BST20200013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7329343PMC
June 2020

Regenerative medicine therapies: lessons from the kidney.

Curr Opin Physiol 2020 Apr;14:41-47

Department of Cellular and Molecular Physiology, University of Liverpool, UK.

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http://dx.doi.org/10.1016/j.cophys.2019.12.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7236377PMC
April 2020

Why data citation isn't working, and what to do about it.

Database (Oxford) 2020 01;2020

Novo Nordisk Research Centre Oxford, Novo Nordisk Ltd. Department of Computer and Information Science, University of Pennsylvania.

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http://dx.doi.org/10.1093/databa/baaa022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7198318PMC
January 2020

A rational roadmap for SARS-CoV-2/COVID-19 pharmacotherapeutic research and development: IUPHAR Review 29.

Br J Pharmacol 2020 11 19;177(21):4942-4966. Epub 2020 Jul 19.

Secretary-General, International Union of Basic and Clinical Pharmacology (IUPHAR) and Spedding Research Solutions SAS, Le Vesinet, France.

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http://dx.doi.org/10.1111/bph.15094DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7267163PMC
November 2020

Inverse pharmacology: Approaches and tools for introducing druggability into engineered proteins.

Biotechnol Adv 2019 12 5;37(8):107439. Epub 2019 Sep 5.

Deanery of Biomedical Sciences, University of Edinburgh, Hugh Robson Building, George Square, Edinburgh EH8 9XB, UK.

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https://linkinghub.elsevier.com/retrieve/pii/S07349750193013
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http://dx.doi.org/10.1016/j.biotechadv.2019.107439DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6891246PMC
December 2019

Emergence of structure in mouse embryos: Structural Entropy morphometry applied to digital models of embryonic anatomy.

J Anat 2019 10 5;235(4):706-715. Epub 2019 Jul 5.

Deanery of Biomedical Sciences, University of Edinburgh, Edinburgh, UK.

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http://dx.doi.org/10.1111/joa.13031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6742931PMC
October 2019

Investigating Aspects of Renal Physiology and Pharmacology in Organ and Organoid Culture.

Methods Mol Biol 2019 ;1926:127-142

Deanery of Biomedical Sciences, University of Edinburgh, Edinburgh, UK.

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http://dx.doi.org/10.1007/978-1-4939-9021-4_11DOI Listing
June 2019

Real-World Synthetic Biology: Is It Founded on an Engineering Approach, and Should It Be?

Authors:
Jamie A Davies

Life (Basel) 2019 Jan 7;9(1). Epub 2019 Jan 7.

UK Centre for Mammalian Synthetic Biology, University of Edinburgh, Edinburgh EH8 9YL, UK.

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http://www.mdpi.com/2075-1729/9/1/6
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http://dx.doi.org/10.3390/life9010006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6463249PMC
January 2019

A new guide to immunopharmacology.

Nat Rev Immunol 2018 12;18(12):729

Deanery of Biomedical Sciences, University of Edinburgh, Edinburgh, UK.

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http://www.nature.com/articles/s41577-018-0079-2
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http://dx.doi.org/10.1038/s41577-018-0079-2DOI Listing
December 2018

Tamoxifen- and Mifepristone-Inducible Versions of CRISPR Effectors, Cas9 and Cpf1.

ACS Synth Biol 2018 09 4;7(9):2160-2169. Epub 2018 Sep 4.

Deanery of Biomedical Sciences , University of Edinburgh , Edinburgh , EH8 9XD , U.K.

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http://pubs.acs.org/doi/10.1021/acssynbio.8b00145
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http://dx.doi.org/10.1021/acssynbio.8b00145DOI Listing
September 2018

Challenges of Connecting Chemistry to Pharmacology: Perspectives from Curating the IUPHAR/BPS Guide to PHARMACOLOGY.

ACS Omega 2018 Jul;3(7):8408-8420

IUPHAR/BPS Guide to PHARMACOLOGY, Centre for Discovery Brain Sciences, Deanery of Biomedical Sciences, University of Edinburgh EH8 9XD, Edinburgh, U.K.

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http://dx.doi.org/10.1021/acsomega.8b00884DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6070956PMC
July 2018

SynPharm: A Guide to PHARMACOLOGY Database Tool for Designing Drug Control into Engineered Proteins.

ACS Omega 2018 Jul 18;3(7):7993-8002. Epub 2018 Jul 18.

Centre for Discovery Brain Sciences, Deanery for Biomedical Sciences, University of Edinburgh, Edinburgh EH8 9XD, U.K.

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http://dx.doi.org/10.1021/acsomega.8b00659DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6068591PMC
July 2018

Accessing Expert-Curated Pharmacological Data in the IUPHAR/BPS Guide to PHARMACOLOGY.

Curr Protoc Bioinformatics 2018 03;61(1):1.34.1-1.34.46

Deanery of Biomedical Sciences, University of Edinburgh, Edinburgh, United Kingdom.

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http://dx.doi.org/10.1002/cpbi.46DOI Listing
March 2018

Vascularizing the Kidney in the Embryo and Organoid: Questioning Assumptions about Renal Vasculogenesis.

J Am Soc Nephrol 2018 06 10;29(6):1593-1595. Epub 2018 May 10.

Deanery of Biomedical Sciences, College of Medicine and Veterinary Medicine, University of Edinburgh, Edinburgh, United Kingdom.

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http://www.jasn.org/lookup/doi/10.1681/ASN.2018020179
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http://dx.doi.org/10.1681/ASN.2018020179DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6054335PMC
June 2018

Functional transport of organic anions and cations in the murine mesonephros.

Am J Physiol Renal Physiol 2018 07 21;315(1):F130-F137. Epub 2018 Mar 21.

Deanery of Biomedical Science and Centre for Synthetic Biology, University of Edinburgh , United Kingdom.

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http://dx.doi.org/10.1152/ajprenal.00021.2018DOI Listing
July 2018

Sebinger Culture: A System Optimized for Morphological Maturation and Imaging of Cultured Mouse Metanephric Primordia.

Bio Protoc 2018 Feb;8(4)

Deanery of Biomedical Sciences, University of Edinburgh, Edinburgh, UK.

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http://dx.doi.org/10.21769/BioProtoc.2730DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5849297PMC
February 2018

Organizing Organoids: Stem Cells Branch Out.

Authors:
Jamie A Davies

Cell Stem Cell 2017 12;21(6):705-706

Biomedical Sciences, University of Edinburgh, Edinburgh EH8 9XD, UK. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2017.11.011DOI Listing
December 2017

Asymmetric BMP4 signalling improves the realism of kidney organoids.

Sci Rep 2017 11 1;7(1):14824. Epub 2017 Nov 1.

Deanery of Biomedical Science, University of Edinburgh, Edinburgh, EH8 9XB, UK.

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http://dx.doi.org/10.1038/s41598-017-14809-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5665994PMC
November 2017

THE CONCISE GUIDE TO PHARMACOLOGY 2017/18: Other ion channels.

Br J Pharmacol 2017 Dec;174 Suppl 1:S195-S207

Centre for Integrative Physiology, University of Edinburgh, Edinburgh, EH8 9XD, UK.

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http://dx.doi.org/10.1111/bph.13881DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5650664PMC
December 2017

THE CONCISE GUIDE TO PHARMACOLOGY 2017/18: Transporters.

Br J Pharmacol 2017 Dec;174 Suppl 1:S360-S446

Centre for Integrative Physiology, University of Edinburgh, Edinburgh, EH8 9XD, UK.

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http://dx.doi.org/10.1111/bph.13883DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5650669PMC
December 2017

Adaptive self-organization in the embryo: its importance to adult anatomy and to tissue engineering.

Authors:
Jamie A Davies

J Anat 2018 04 10;232(4):524-533. Epub 2017 Oct 10.

Deanery of Biomedical Sciences, University of Edinburgh Medical School, Edinburgh, UK.

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http://dx.doi.org/10.1111/joa.12691DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5835792PMC
April 2018

Refuting the hypothesis that semaphorin-3f/neuropilin-2 exclude blood vessels from the cap mesenchyme in the developing kidney.

Dev Dyn 2017 12 13;246(12):1047-1056. Epub 2017 Oct 13.

Centre for Integrative Physiology, University of Edinburgh, Edinburgh, United Kingdom.

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http://doi.wiley.com/10.1002/dvdy.24592
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http://dx.doi.org/10.1002/dvdy.24592DOI Listing
December 2017

The inter-dependence of basic and applied biomedical sciences: Lessons from kidney development and tissue-engineering.

Authors:
Jamie A Davies

Porto Biomed J 2017 Sep-Oct;2(5):136-139. Epub 2017 Sep 1.

University of Edinburgh Medical School Edinburgh, Scotland, UK.

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http://dx.doi.org/10.1016/j.pbj.2017.05.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6806814PMC
September 2017

Cycles of vascular plexus formation within the nephrogenic zone of the developing mouse kidney.

Sci Rep 2017 06 12;7(1):3273. Epub 2017 Jun 12.

Centre for Integrative Physiology, The University of Edinburgh, Hugh Robson Building, 15 George Square, Edinburgh, EH8 9XD, United Kingdom.

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http://dx.doi.org/10.1038/s41598-017-03808-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5468301PMC
June 2017

Rapid Fabrication of Cell-Laden Alginate Hydrogel 3D Structures by Micro Dip-Coating.

Front Bioeng Biotechnol 2017 24;5:13. Epub 2017 Feb 24.

School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, UK; Department of Biomedical Engineering, University of Strathclyde, Glasgow, UK.

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http://journal.frontiersin.org/article/10.3389/fbioe.2017.00
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http://dx.doi.org/10.3389/fbioe.2017.00013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5323421PMC
February 2017

Synthetic biology meets tissue engineering.

Biochem Soc Trans 2016 06;44(3):696-701

Centre for Integrative Physiology and Synthsys Mammalian, University of Edinburgh, Edinburgh EH8 9XB, U.K.

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http://dx.doi.org/10.1042/BST20150289DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5264501PMC
June 2016

2- and 3-dimensional synthetic large-scale de novo patterning by mammalian cells through phase separation.

Sci Rep 2016 Feb 9;6:20664. Epub 2016 Feb 9.

Centre for Integrative Physiology &Synthsys Centre for Synthetic &Systems Biology, University of Edinburgh, George Square, Edinburgh EH8 9XB, UK.

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http://dx.doi.org/10.1038/srep20664DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4746622PMC
February 2016

Synthetic Biology: Rational Pathway Design for Regenerative Medicine.

Authors:
Jamie A Davies

Gerontology 2016 17;62(5):564-70. Epub 2015 Oct 17.

Centre for Integrative Physiology, University of Edinburgh, Edinburgh, UK.

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http://dx.doi.org/10.1159/000440721DOI Listing
January 2018

Biological techniques: Kidney tissue grown from induced stem cells.

Authors:
Jamie A Davies

Nature 2015 Oct 7;526(7574):512-3. Epub 2015 Oct 7.

Centre for Integrative Physiology, University of Edinburgh, Edinburgh EH8 9XB, UK.

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http://dx.doi.org/10.1038/nature15639DOI Listing
October 2015

Self-organized Kidney Rudiments: Prospects for Better in vitro Nephrotoxicity Assays.

Authors:
Jamie A Davies

Biomark Insights 2015 16;10(Suppl 1):117-23. Epub 2015 Jul 16.

Centre for Integrative Physiology, University of Edinburgh, Edinburgh, UK.

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http://journals.sagepub.com/doi/10.4137/BMI.S20056
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http://dx.doi.org/10.4137/BMI.S20056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4507472PMC
August 2015

Cell-cell interactions driving kidney morphogenesis.

Curr Top Dev Biol 2015 12;112:467-508. Epub 2015 Feb 12.

Murdoch Children's Research Institute, Royal Children's Hospital, Melbourne, Victoria, Australia. Electronic address:

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http://dx.doi.org/10.1016/bs.ctdb.2014.12.002DOI Listing
December 2015

A library of mammalian effector modules for synthetic morphology.

J Biol Eng 2014 19;8(1):26. Epub 2014 Nov 19.

University of Edinburgh, Centre for Integrative Physiology, Hugh Robson Building, George Square, Edinburgh, EH8 9XD UK.

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http://dx.doi.org/10.1186/1754-1611-8-26DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4255936PMC
December 2014

Node retraction during patterning of the urinary collecting duct system.

J Anat 2015 Jan 8;226(1):13-21. Epub 2014 Oct 8.

Roslin Institute, University of Edinburgh, Easter Bush, UK.

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http://dx.doi.org/10.1111/joa.12239DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4299504PMC
January 2015

A self-avoidance mechanism in patterning of the urinary collecting duct tree.

BMC Dev Biol 2014 Sep 10;14:35. Epub 2014 Sep 10.

The Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, EH4 2XU, UK.

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http://dx.doi.org/10.1186/s12861-014-0035-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4448276PMC
September 2014

Disinherited daughters travel by tube.

Authors:
Jamie A Davies

Dev Cell 2013 Nov;27(3):245-6

Centre for Integrative Physiology, University of Edinburgh, Edinburgh EH8 9XD, UK. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S15345807130061
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http://dx.doi.org/10.1016/j.devcel.2013.10.016DOI Listing
November 2013

Nephrons require Rho-kinase for proximal-distal polarity development.

Sci Rep 2013 ;3:2692

1] Centre for Integrative Physiology, The University of Edinburgh, Hugh Robson Building, EH8 9XB, United Kingdom [2] MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, The University of Edinburgh, Edinburgh, EH4 2XU, United Kingdom [3] The Roslin Institute, The University of Edinburgh, Easter Bush, EH25 9RG, United Kingdom.

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http://dx.doi.org/10.1038/srep02692DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3776198PMC
June 2014

Engineering kidneys from simple cell suspensions: an exercise in self-organization.

Pediatr Nephrol 2014 Apr 30;29(4):519-24. Epub 2013 Aug 30.

University of Edinburgh, Edinburgh, Scotland, UK,

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http://dx.doi.org/10.1007/s00467-013-2579-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928531PMC
April 2014

FAK-Src signalling is important to renal collecting duct morphogenesis: discovery using a hierarchical screening technique.

Biol Open 2013 Apr 26;2(4):416-23. Epub 2013 Feb 26.

Centre for Integrative Physiology, University of Edinburgh , Edinburgh EH8 9XD , UK.

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http://dx.doi.org/10.1242/bio.20133780DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3625870PMC
April 2013

An improved method of renal tissue engineering, by combining renal dissociation and reaggregation with a low-volume culture technique, results in development of engineered kidneys complete with loops of Henle.

Nephron Exp Nephrol 2012 7;121(3-4):e79-85. Epub 2012 Dec 7.

University of Edinburgh Centre for Integrative Physiology, Edinburgh, UK.

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http://dx.doi.org/10.1159/000345514DOI Listing
December 2013

Cell biology of ureter development.

J Am Soc Nephrol 2013 Jan 2;24(1):19-25. Epub 2012 Nov 2.

School of Biomedicine, University of Manchester, Manchester Academic Health Science Centre and Manchester Children's Hospital, Michael Smith Building, Oxford Road, Manchester, M13 9PT, UK.

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http://dx.doi.org/10.1681/ASN.2012020127DOI Listing
January 2013

In vivo maturation of functional renal organoids formed from embryonic cell suspensions.

J Am Soc Nephrol 2012 Nov 18;23(11):1857-68. Epub 2012 Oct 18.

Department of Molecular Medicine, Mario Negri Institute for Pharmacological Research, Bergamo, Italy.

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http://dx.doi.org/10.1681/ASN.2012050505DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3482737PMC
November 2012

In-lab three-dimensional printing: an inexpensive tool for experimentation and visualization for the field of organogenesis.

Organogenesis 2012 Jan-Mar;8(1):22-7. Epub 2012 Jan 1.

Centre for Integrative Physiology, University of Edinburgh, Edinburgh, UK.

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http://dx.doi.org/10.4161/org.20173DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3399707PMC
December 2012

siRNA-mediated RNA interference in embryonic kidney organ culture.

Methods Mol Biol 2012 ;886:295-303

University of Edinburgh, Hugh Robson Building, Edinburgh, UK.

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http://dx.doi.org/10.1007/978-1-61779-851-1_26DOI Listing
September 2012

Making immortalized cell lines from embryonic mouse kidney.

Methods Mol Biol 2012 ;886:165-71

University of Edinburgh, Hugh Robson Building, Edinburgh, UK.

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http://link.springer.com/10.1007/978-1-61779-851-1_15
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http://dx.doi.org/10.1007/978-1-61779-851-1_15DOI Listing
September 2012

Dissociation of embryonic kidney followed by re-aggregation as a method for chimeric analysis.

Methods Mol Biol 2012 ;886:135-46

University of Edinburgh, Hugh Robson Building, Edinburgh, UK.

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http://dx.doi.org/10.1007/978-1-61779-851-1_12DOI Listing
September 2012

Integration potential of mouse and human bone marrow-derived mesenchymal stem cells.

Differentiation 2012 Mar 30;83(3):128-37. Epub 2011 Nov 30.

Institute of Translational Medicine, The University of Liverpool, Liverpool, UK.

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http://dx.doi.org/10.1016/j.diff.2011.11.004DOI Listing
March 2012

Dact2 is expressed in the developing ureteric bud/collecting duct system of the kidney and controls morphogenetic behavior of collecting duct cells.

Am J Physiol Renal Physiol 2010 Oct 4;299(4):F740-51. Epub 2010 Aug 4.

Centre for Integrative Physiology, Univ. of Edinburgh, Edinburgh, EH8 9XB, UK.

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http://dx.doi.org/10.1152/ajprenal.00148.2010DOI Listing
October 2010

Contribution of human amniotic fluid stem cells to renal tissue formation depends on mTOR.

Hum Mol Genet 2010 Sep 11;19(17):3320-31. Epub 2010 Jun 11.

Institute of Medical Genetics, Medical University of Vienna, Währinger Strasse 10, 1090 Vienna, Austria.

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https://academic.oup.com/hmg/article-lookup/doi/10.1093/hmg/
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http://dx.doi.org/10.1093/hmg/ddq236DOI Listing
September 2010

The embryonic kidney: isolation, organ culture, immunostaining and RNA interference.

Authors:
Jamie A Davies

Methods Mol Biol 2010 ;633:57-69

Centre for Integrative Physiology, University of Edinburgh, Edinburgh EH8 9XD, UK.

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http://dx.doi.org/10.1007/978-1-59745-019-5_4DOI Listing
May 2010

Dissociation of embryonic kidneys followed by reaggregation allows the formation of renal tissues.

Kidney Int 2010 Mar 16;77(5):407-16. Epub 2009 Dec 16.

Centre for Integrative Physiology, University of Edinburgh, Edinburgh, UK.

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https://linkinghub.elsevier.com/retrieve/pii/S00852538155427
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http://dx.doi.org/10.1038/ki.2009.482DOI Listing
March 2010

Developmental plasticity and regenerative capacity in the renal ureteric bud/collecting duct system.

Development 2008 Aug 25;135(15):2505-10. Epub 2008 Jun 25.

Centre for Integrative Physiology, University of Edinburgh, Hugh Robson Building, George Square, Edinburgh, UK.

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http://dx.doi.org/10.1242/dev.022145DOI Listing
August 2008

Synthetic morphology: prospects for engineered, self-constructing anatomies.

Authors:
Jamie A Davies

J Anat 2008 Jun;212(6):707-19

Centre for Integrative Physiology, University of Edinburgh, George Square, Edinburgh, United Kingdom.

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http://dx.doi.org/10.1111/j.1469-7580.2008.00896.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2423395PMC
June 2008

GUDMAP: the genitourinary developmental molecular anatomy project.

J Am Soc Nephrol 2008 Apr 20;19(4):667-71. Epub 2008 Feb 20.

Department of Molecular and Cellular Biology and Harvard Stem Cell Institute, Harvard University, 16, Divinity Avenue, Cambridge, MA 02138, USA.

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http://www.jasn.org/cgi/doi/10.1681/ASN.2007101078
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http://dx.doi.org/10.1681/ASN.2007101078DOI Listing
April 2008

Epithelial branching: the power of self-loathing.

Bioessays 2007 Mar;29(3):205-7

Chang Gung Memorial Hospital-Kaohsiung Medical Center, Taiwan.

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http://dx.doi.org/10.1002/bies.20541DOI Listing
March 2007