Publications by authors named "James R Johnson"

100Publications

Prevalence, Characteristics, and Epidemiology of Microbial Hand Contamination Among Minnesota State Fair Attendees (2014).

Authors:
Meghan R Mason Bozena M Morawski Ruby L Bayliss Fatuma M Noor Sagal H Jama Connie L Clabots James R Johnson

Front Public Health 2020 16;8:574444. Epub 2020 Dec 16.

Minneapolis VA Health Care System, Minneapolis, MN, United States.

View Article and Find Full Text PDF
December 2020

Recurrent Herpes Zoster.

Authors:
James R Johnson

J Infect Dis 2020 Nov 27. Epub 2020 Nov 27.

View Article and Find Full Text PDF
November 2020

Bacterial "Virulence" Traits and Host Demographics Predict Colonization Behaviors Within Households.

Authors:
Teresa C Fox Connie Clabots Stephen B Porter Tricia Bender Paul Thuras Aylin Colpan Jessica Boettcher James R Johnson

Open Forum Infect Dis 2020 Nov 22;7(11):ofaa495. Epub 2020 Oct 22.

Infectious Diseases, Veterans Affairs Medical Center, Minneapolis, Minnesota, USA.

View Article and Find Full Text PDF
November 2020

Horizontally acquired papGII-containing pathogenicity islands underlie the emergence of invasive uropathogenic Escherichia coli lineages.

Authors:
Michael Biggel Basil B Xavier James R Johnson Karen L Nielsen Niels Frimodt-Møller Veerle Matheeussen Herman Goossens Pieter Moons Sandra Van Puyvelde

Nat Commun 2020 11 24;11(1):5968. Epub 2020 Nov 24.

Laboratory of Medical Microbiology, Vaccine and Infectious Disease Institute, University of Antwerp, Antwerp, Belgium.

View Article and Find Full Text PDF
November 2020

Draft genome sequences of concurrent Escherichia coli blood and fecal isolates from a patient with bacteremia and diarrhea belie BioFire-based detection of fecal enteropathogenic E. coli.

Authors:
Pradip Kumar Singh Brian D Johnston James R Johnson Michael S Donnenberg

Pathog Dis 2020 11;78(8)

Virginia Commonwealth University, 1101 East Marshall Street, Sanger Hall Room 1-055C, Richmond, VA 23298, USA.

View Article and Find Full Text PDF
November 2020

Companion Animals Are Spillover Hosts of the Multidrug-Resistant Human Extraintestinal Pandemic Clones ST131 and ST1193.

Authors:
Amanda K Kidsley Rhys T White Scott A Beatson Sugiyono Saputra Mark A Schembri David Gordon James R Johnson Mark O'Dea Joanne L Mollinger Sam Abraham Darren J Trott

Front Microbiol 2020 2;11:1968. Epub 2020 Sep 2.

Australian Centre for Antimicrobial Resistance Ecology, School of Animal and Veterinary Sciences, The University of Adelaide, Roseworthy, SA, Australia.

View Article and Find Full Text PDF
September 2020

Genomic analysis of phylogenetic group B2 extraintestinal pathogenic E. coli causing infections in dogs in Australia.

Authors:
Amanda K Kidsley Mark O'Dea Sugiyono Saputra David Jordan James R Johnson David M Gordon Conny Turni Steven P Djordjevic Sam Abraham Darren J Trott

Vet Microbiol 2020 Sep 1;248:108783. Epub 2020 Jul 1.

School of Animal and Veterinary Sciences, The University of Adelaide, Roseworthy, SA, Australia.

View Article and Find Full Text PDF
September 2020

Peptidoglycan Sensing Prevents Quiescence and Promotes Quorum-Independent Colony Growth of Uropathogenic Escherichia coli.

Authors:
Eric C DiBiasio Hilary J Ranson James R Johnson David C Rowley Paul S Cohen Jodi L Camberg

J Bacteriol 2020 Sep 23;202(20). Epub 2020 Sep 23.

Department of Cell & Molecular Biology, The University of Rhode Island, Kingston, Rhode Island, USA

View Article and Find Full Text PDF
September 2020

Activity of Cefiderocol, Ceftazidime-Avibactam, and Eravacycline against Carbapenem-Resistant Escherichia coli Isolates from the United States and International Sites in Relation to Clonal Background, Resistance Genes, Coresistance, and Region.

Authors:
Brian D Johnston Paul Thuras Stephen B Porter Melissa Anacker Brittany VonBank Paula Snippes Vagnone Medora Witwer Mariana Castanheira James R Johnson

Antimicrob Agents Chemother 2020 09 21;64(10). Epub 2020 Sep 21.

Minneapolis VA Health Care System, Minneapolis, Minnesota, USA.

View Article and Find Full Text PDF
September 2020

Genotyping of Escherichia coli Isolates for Extraintestinal Virulence Genes by Use of Whole-Genome Sequencing Data.

Authors:
Anna Maria Malberg Tetzschner James R Johnson Brian D Johnston Ole Lund Flemming Scheutz

J Clin Microbiol 2020 Sep 22;58(10). Epub 2020 Sep 22.

The International Centre for Reference and Research on Escherichia and Klebsiella, Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

View Article and Find Full Text PDF
September 2020

A novel ergonomic wheelchair reduces bacterial hand contamination.

Authors:
Billie C Savvas Slater Stephen B Porter Aaron S DeVries James R Johnson Connie R Clabots Andrew H Hansen Gary D Goldish

Disabil Rehabil Assist Technol 2020 Jul 3:1-4. Epub 2020 Jul 3.

Minneapolis Veterans Affairs Health Care System, Minneapolis, MN, USA.

View Article and Find Full Text PDF
July 2020

Genomic analysis of fluoroquinolone-susceptible phylogenetic group B2 extraintestinal pathogenic Escherichia coli causing infections in cats.

Authors:
Amanda K Kidsley Mark O'Dea Esmaeil Ebrahimie Manijeh Mohammadi-Dehcheshmeh Sugiyono Saputra David Jordan James R Johnson David Gordon Conny Turni Steven P Djordjevic Sam Abraham Darren J Trott

Vet Microbiol 2020 Jun 18;245:108685. Epub 2020 Apr 18.

School of Animal and Veterinary Sciences, The University of Adelaide, Roseworthy, SA, Australia; Australian Centre for Antimicrobial Resistance Ecology, School of Animal and Veterinary Sciences, The University of Adelaide, Adelaide, SA, Australia.

View Article and Find Full Text PDF
June 2020

Emergence of Enteroaggregative Escherichia coli within the ST131 Lineage as a Cause of Extraintestinal Infections.

Authors:
Erik J Boll Søren Overballe-Petersen Henrik Hasman Louise Roer Kim Ng Flemming Scheutz Anette M Hammerum Arnold Dungu Frank Hansen Thor B Johannesen Abigail Johnson Divek T Nair Berit Lilje Dennis S Hansen Karen A Krogfelt Timothy J Johnson Lance B Price James R Johnson Carsten Struve Bente Olesen Marc Stegger

mBio 2020 05 19;11(3). Epub 2020 May 19.

Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

View Article and Find Full Text PDF
May 2020

Epidemiology of Escherichia coli Bacteremia: A Systematic Literature Review.

Authors:
Marc Bonten James R Johnson Anita H J van den Biggelaar Leonidas Georgalis Jeroen Geurtsen Patricia Ibarra de Palacios Stefan Gravenstein Thomas Verstraeten Peter Hermans Jan T Poolman

Clin Infect Dis 2020 May 14. Epub 2020 May 14.

Bacterial Vaccines Discovery and Early Development, Janssen Vaccines and Prevention B.V., Leiden, The Netherlands.

View Article and Find Full Text PDF
May 2020

Activity of ceftazidime-avibactam against Escherichia coli isolates from U.S. veterans (2011) in relation to co-resistance and sequence type 131 (ST131) H30 and H30Rx status.

Authors:
Brian D Johnston Paul D Thuras James R Johnson

Diagn Microbiol Infect Dis 2020 Jul 10;97(3):115034. Epub 2020 Mar 10.

VA Medical Center, Minneapolis, MN; University of Minnesota, Minneapolis, MN.

View Article and Find Full Text PDF
July 2020

Infectious Pneumorachis Due to Clostridium septicum.

Authors:
Janewit Wongboonsin Alisa Duran James R Johnson

J Gen Intern Med 2020 Jul 16;35(7):2197-2198. Epub 2020 Apr 16.

Infectious Diseases, Minneapolis VA Medical Center, 1 Veteran Drive, Minneapolis, MN, 55417, USA.

View Article and Find Full Text PDF
July 2020

Molecularly defined extraintestinal pathogenic status predicts virulence in a murine sepsis model better than does virotype, individual virulence genes, or clonal subset among ST131 isolates.

Authors:
Irene Merino Stephen B Porter Brian Johnston Connie Clabots Paul Thuras Patricia Ruiz-Garbajosa Rafael Cantón James R Johnson

Virulence 2020 12;11(1):327-336

Infectious Diseases, Minneapolis Veterans Health Care System, Minneapolis, MN, USA.

View Article and Find Full Text PDF
December 2020

Activity of Imipenem-Relebactam against Carbapenem-Resistant Escherichia coli Isolates from the United States in Relation to Clonal Background, Resistance Genes, Coresistance, and Region.

Authors:
Brian D Johnston Paul Thuras Stephen B Porter Melissa Anacker Brittany VonBank Paula Snippes Vagnone Medora Witwer Mariana Castanheira James R Johnson

Antimicrob Agents Chemother 2020 04 21;64(5). Epub 2020 Apr 21.

Minneapolis VA Health Care System, Minneapolis, Minnesota, USA

View Article and Find Full Text PDF
April 2020

Large Fecal Reservoir of Escherichia coli Sequence Type 131-H30 Subclone Strains That Are Shared Within Households and Resemble Clinical ST131-H30 Isolates.

Authors:
Muhanad Mohamed Connie Clabots Stephen B Porter Tricia Bender Paul Thuras James R Johnson

J Infect Dis 2020 Apr;221(10):1659-1668

Division of Infectious Diseases and International Medicine , University of Minnesota, Minneapolis, Minnesota, USA.

View Article and Find Full Text PDF
April 2020

Diagnosis and Management of Osteomyelitis Associated With Stage 4 Pressure Ulcers: Report of a Query to the Emerging Infections Network of the Infectious Diseases Society of America.

Authors:
Anjum S Kaka Susan E Beekmann Amy Gravely Gregory A Filice Philip M Polgreen James R Johnson

Open Forum Infect Dis 2019 Nov 1;6(11):ofz406. Epub 2019 Nov 1.

Veterans Affairs Medical Center, Minneapolis, Minnesota, USA.

View Article and Find Full Text PDF
November 2019

Antimicrobial Decision-Making and Stewardship.

Authors:
James R Johnson

Clin Infect Dis 2020 Jul;71(3):700

Minneapolis Veterans Affairs Medical Center and University of Minnesota, Minneapolis, Minnesota, USA.

View Article and Find Full Text PDF
July 2020

Analysis of urine-specific antibiograms from veterans to guide empiric therapy for suspected urinary tract infection.

Authors:
Ketzela J Marsh Lesley Mundy John J Holter James R Johnson

Diagn Microbiol Infect Dis 2019 Dec 30;95(4):114874. Epub 2019 Jul 30.

University of Minnesota, Minneapolis, MN, USA; Minneapolis Veterans Affairs Medical Center, Minneapolis, MN, USA.

View Article and Find Full Text PDF
December 2019

Prevalence of asymptomatic bacteriuria among kidney transplant recipients beyond two months post-transplant: A multicenter, prospective, cross-sectional study.

Authors:
Julien Coussement Anne Scemla Jean-Michel Hougardy Rebecca Sberro-Soussan Lucile Amrouche Concetta Catalano James R Johnson Daniel Abramowicz

PLoS One 2019 6;14(9):e0221820. Epub 2019 Sep 6.

Department of Nephrology-Hypertension, Universitair Ziekenhuis Antwerpen and Antwerp University, Antwerp, Belgium.

View Article and Find Full Text PDF
March 2020

Inactivation of extraintestinal pathogenic E. coli clinical and food isolates suspended in ground chicken meat by gamma radiation.

Authors:
Aixia Xu O Joseph Scullen Shiowshuh Sheen James R Johnson Christopher H Sommers

Food Microbiol 2019 Dec 12;84:103264. Epub 2019 Jul 12.

U.S. Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center, 600 East Mermaid Lane, Wyndmoor, Pennsylvania, 19038, USA. Electronic address:

View Article and Find Full Text PDF
December 2019

Author Correction: Building a global alliance of biofoundries.

Authors:
Nathan Hillson Mark Caddick Yizhi Cai Jose A Carrasco Matthew Wook Chang Natalie C Curach David J Bell Rosalind Le Feuvre Douglas C Friedman Xiongfei Fu Nicholas D Gold Markus J Herrgård Maciej B Holowko James R Johnson Richard A Johnson Jay D Keasling Richard I Kitney Akihiko Kondo Chenli Liu Vincent J J Martin Filippo Menolascina Chiaki Ogino Nicola J Patron Marilene Pavan Chueh Loo Poh Isak S Pretorius Susan J Rosser Nigel S Scrutton Marko Storch Hille Tekotte Evelyn Travnik Claudia E Vickers Wen Shan Yew Yingjin Yuan Huimin Zhao Paul S Freemont

Nat Commun 2019 Jul 11;10(1):3132. Epub 2019 Jul 11.

London DNA Foundry, Imperial College Translation & Innovation Hub, White City Campus, 80 WoodLane, London, W12 0BZ, UK.

View Article and Find Full Text PDF
July 2019

Building a global alliance of biofoundries.

Authors:
Nathan Hillson Mark Caddick Yizhi Cai Jose A Carrasco Matthew Wook Chang Natalie C Curach David J Bell Rosalind Le Feuvre Douglas C Friedman Xiongfei Fu Nicholas D Gold Markus J Herrgård Maciej B Holowko James R Johnson Richard A Johnson Jay D Keasling Richard I Kitney Akihiko Kondo Chenli Liu Vincent J J Martin Filippo Menolascina Chiaki Ogino Nicola J Patron Marilene Pavan Chueh Loo Poh Isak S Pretorius Susan J Rosser Nigel S Scrutton Marko Storch Hille Tekotte Evelyn Travnik Claudia E Vickers Wen Shan Yew Yingjin Yuan Huimin Zhao Paul S Freemont

Nat Commun 2019 05 9;10(1):2040. Epub 2019 May 9.

London DNA Foundry, Imperial College Translation & Innovation Hub, White City Campus, 80 Wood Lane, London, W12 0BZ, UK.

View Article and Find Full Text PDF
May 2019

Despite Predominance of Uropathogenic/Extraintestinal Pathotypes Among Travel-acquired Extended-spectrum β-Lactamase-producing Escherichia coli, the Most Commonly Associated Clinical Manifestation Is Travelers' Diarrhea.

Authors:
Anu Kantele Tinja Lääveri Sointu Mero Inka M K Häkkinen Juha Kirveskari Brian D Johnston James R Johnson

Clin Infect Dis 2020 01;70(2):210-218

Infectious Diseases, Veterans Affairs Medical Center, Minneapolis, Minnesota.

View Article and Find Full Text PDF
January 2020

Predictive characteristics of methicillin-resistant Staphylococcus aureus nares screening tests for methicillin resistance among S. aureus clinical isolates from hospitalized veterans.

Authors:
Teresa C Fox Paul Thuras James R Johnson

Infect Control Hosp Epidemiol 2019 05 15;40(5):603-605. Epub 2019 Apr 15.

Division of Infectious Diseases and International Medicine,University of Minnesota,Minneapolis, Minnesota.

View Article and Find Full Text PDF
May 2019

Survey of US wastewater for carbapenem-resistant Enterobacteriaceae.

Authors:
Jill Hoelle James R Johnson Brian D Johnston Brian Kinkle Laura Boczek Hodon Ryu Sam Hayes

J Water Health 2019 Apr;17(2):219-226

National Risk Management Research Laboratory, Office of Research and Development, United States Environmental Protection Agency, Cincinnati, OH 45268, USA E-mail:

View Article and Find Full Text PDF
April 2019

Rapid Emergence, Subsidence, and Molecular Detection of Sequence Type 1193-, a New Disseminated Multidrug-Resistant Commensal and Extraintestinal Pathogen.

Authors:
James R Johnson Brian D Johnston Stephen B Porter Connie Clabots Tricia L Bender Paul Thuras Darren J Trott Rowland Cobbold Joanne Mollinger Patricia Ferrieri Sarah Drawz Ritu Banerjee

J Clin Microbiol 2019 05 26;57(5). Epub 2019 Apr 26.

Division of Pediatric Infectious Diseases, Vanderbilt University Medical Center, Nashville, Tennessee, USA.

View Article and Find Full Text PDF
May 2019

Analysis of mutational patterns in quinolone resistance-determining regions of GyrA and ParC of clinical isolates.

Authors:
Lev Ostrer Rachel F Khodursky James R Johnson Hiroshi Hiasa Arkady Khodursky

Int J Antimicrob Agents 2019 Mar 21;53(3):318-324. Epub 2018 Dec 21.

Department of Biochemistry, Molecular Biology and Biophysics, Biotechnology Institute, University of Minnesota, St Paul, MN, USA. Electronic address:

View Article and Find Full Text PDF
March 2019

Self-reported risk factors for having Escherichia coli sequence type 131 or its H30 subclone among US Veterans with a clinical E. coli isolate.

Authors:
Amee R Manges Paul Thuras Stephen Porter James R Johnson

Epidemiol Infect 2018 Dec 3:1-7. Epub 2018 Dec 3.

Minneapolis Veterans Health Care System,Minneapolis, Minnesota,USA.

View Article and Find Full Text PDF
December 2018

Phylogenomic Analysis of Extraintestinal Pathogenic Sequence Type 1193, an Emerging Multidrug-Resistant Clonal Group.

Authors:
Timothy J Johnson Ehud Elnekave Elizabeth A Miller Jeannette Munoz-Aguayo Cristian Flores Figueroa Brian Johnston Daniel W Nielson Catherine M Logue James R Johnson

Antimicrob Agents Chemother 2019 01 21;63(1). Epub 2018 Dec 21.

Minneapolis Veterans Health Care System, Minneapolis, Minnesota, USA

View Article and Find Full Text PDF
January 2019

Host and microbial factors in kidney transplant recipients with Escherichia coli acute pyelonephritis or asymptomatic bacteriuria: a prospective study using whole-genome sequencing.

Authors:
Julien Coussement Maria Angeles Argudín Amélie Heinrichs Judith Racapé Ricardo de Mendonça Louise Nienhaus Alain Le Moine Sandrine Roisin Magali Dodémont Frédérique Jacobs Daniel Abramowicz Brian D Johnston James R Johnson Olivier Denis

Nephrol Dial Transplant 2019 05;34(5):878-885

Department of Microbiology, CUB-Hôpital Erasme, Université Libre de Bruxelles, Brussels, Belgium.

View Article and Find Full Text PDF
May 2019

Cost-effectiveness of pre-operative Staphylococcus aureus screening and decolonization.

Authors:
Susan E Kline Erinn C Sanstead James R Johnson Shalini L Kulasingam

Infect Control Hosp Epidemiol 2018 11 20;39(11):1340-1346. Epub 2018 Sep 20.

2Division of Epidemiology, University of Minnesota School of Public Health,Minneapolis,Minnesota.

View Article and Find Full Text PDF
November 2018

Triamcinolone acetonide extended-release in patients with osteoarthritis and type 2 diabetes: a randomized, phase 2 study.

Authors:
Steven J Russell Robert Sala Philip G Conaghan George Habib Quang Vo Rickey Manning Alan Kivitz Yvonne Davis Joelle Lufkin James R Johnson Scott Kelley Neil Bodick

Rheumatology (Oxford) 2018 12;57(12):2235-2241

Flexion Therapeutics, Inc. Burlington, MA, USA.

View Article and Find Full Text PDF
December 2018

Prevalence and Molecular Characteristics of Clostridium difficile in Retail Meats, Food-Producing and Companion Animals, and Humans in Minnesota.

Authors:
Megan K Shaughnessy Tim Snider Rocio Sepulveda David Boxrud Elizabeth Cebelinski Selina Jawahir Stacy Holzbauer Brian D Johnston Kirk Smith Jeff B Bender Paul Thuras Francisco Diez-Gonzalez James R Johnson

J Food Prot 2018 10;81(10):1635-1642

1 University of Minnesota, Minneapolis, Minnesota 55455.

View Article and Find Full Text PDF
October 2018

Escherichia coli ST131-22 as a Foodborne Uropathogen.

Authors:
Cindy M Liu Marc Stegger Maliha Aziz Timothy J Johnson Kara Waits Lora Nordstrom Lori Gauld Brett Weaver Diana Rolland Sally Statham Joseph Horwinski Sanjeev Sariya Gregg S Davis Evgeni Sokurenko Paul Keim James R Johnson Lance B Price

mBio 2018 08 28;9(4). Epub 2018 Aug 28.

Antibiotic Resistance Action Center, Department of Environmental and Occupational Health, Milken Institute School of Public Health, George Washington University, Washington, DC, USA

View Article and Find Full Text PDF
August 2018

Accessory Traits and Phylogenetic Background Predict Escherichia coli Extraintestinal Virulence Better Than Does Ecological Source.

Authors:
James R Johnson Brian D Johnston Stephen Porter Paul Thuras Maliha Aziz Lance B Price

J Infect Dis 2019 01;219(1):121-132

George Washington University, Washington, D. C.

View Article and Find Full Text PDF
January 2019

Clinical and Molecular Correlates of Escherichia coli Bloodstream Infection from Two Geographically Diverse Centers in Rochester, Minnesota, and Singapore.

Authors:
Shehara M Mendis Shawn Vasoo Brian D Johnston Stephen B Porter Scott A Cunningham Sanjay R Menon Christine B Teng Partha P De Robin Patel James R Johnson Ritu Banerjee

Antimicrob Agents Chemother 2018 10 24;62(10). Epub 2018 Sep 24.

Division of Infectious Diseases, Department of Pediatrics, Vanderbilt University School of Medicine, Nashville, Tennessee, USA

View Article and Find Full Text PDF
October 2018

Extensive Genetic Commonality among Wildlife, Wastewater, Community, and Nosocomial Isolates of Escherichia coli Sequence Type 131 (30R1 and 30Rx Subclones) That Carry or .

Authors:
Ivana Jamborova Brian D Johnston Ivo Papousek Katerina Kachlikova Lenka Micenkova Connie Clabots Anna Skalova Katerina Chudejova Monika Dolejska Ivan Literak James R Johnson

Antimicrob Agents Chemother 2018 10 24;62(10). Epub 2018 Sep 24.

Veterans Affairs Medical Center and University of Minnesota, Minneapolis, Minnesota, USA.

View Article and Find Full Text PDF
October 2018

Randomized controlled trial of a self-administered five-day antiseptic bundle versus usual disinfectant soap showers for preoperative eradication of Staphylococcus aureus colonization.

Authors:
Susan E Kline James D Neaton Ruth Lynfield Patricia Ferrieri Shalini Kulasingam Kayleigh Dittes Anita Glennen Selina Jawahir Alexander Kaizer Jeremiah Menk James R Johnson

Infect Control Hosp Epidemiol 2018 09 24;39(9):1049-1057. Epub 2018 Jul 24.

University of Minnesota Medical School, Department of Medicine, Division of Infectious Diseases, Minneapolis, Minnesota.

View Article and Find Full Text PDF
September 2018

Activity of ceftolozane-tazobactam against Escherichia coli isolates from U.S. veterans (2011) in relation to co-resistance and sequence type 131 (ST131) H30 and H30Rx status.

Authors:
Brian D Johnston Paul Thuras James R Johnson

PLoS One 2018 10;13(7):e0200442. Epub 2018 Jul 10.

VA Medical Center, Minneapolis, MN, United States of America.

View Article and Find Full Text PDF
January 2019

Rapid and Extensive Expansion in the United States of a New Multidrug-resistant Escherichia coli Clonal Group, Sequence Type 1193.

Authors:
Veronika L Tchesnokova Elena Rechkina Lydia Larson Kendra Ferrier Jamie Lee Weaver David W Schroeder Rosemary She Susan M Butler-Wu Maria E Aguero-Rosenfeld Danielle Zerr Ferric C Fang James Ralston Kim Riddell Delia Scholes Scott Weissman Kaveri Parker Brad Spellberg James R Johnson Evgeni V Sokurenko

Clin Infect Dis 2019 01;68(2):334-337

Department of Microbiology, University of Washington School of Medicine, Seattle.

View Article and Find Full Text PDF
January 2019

The Uropathogenic Escherichia coli Subclone Sequence Type 131-H30 Is Responsible for Most Antibiotic Prescription Errors at an Urgent Care Clinic.

Authors:
Veronika Tchesnokova Kim Riddell Delia Scholes James R Johnson Evgeni V Sokurenko

Clin Infect Dis 2019 02;68(5):781-787

Department of Microbiology, University of Washington School of Medicine, Seattle.

View Article and Find Full Text PDF
February 2019

Identification of Biomarkers for Differentiation of Hypervirulent Klebsiella pneumoniae from Classical K. pneumoniae.

Authors:
Thomas A Russo Ruth Olson Chi-Tai Fang Nicole Stoesser Mark Miller Ulrike MacDonald Alan Hutson Jason H Barker Ricardo M La Hoz James R Johnson

J Clin Microbiol 2018 09 27;56(9). Epub 2018 Aug 27.

Minneapolis VA Health Care System and University of Minnesota, Minneapolis, Minnesota, USA.

View Article and Find Full Text PDF
September 2018

Identifying Antibiotic-Resistant Infections.

Authors:
Dimitri M Drekonja James R Johnson

Health Aff (Millwood) 2018 06;37(6):1014-1015

Minneapolis VA Healthcare System Minneapolis, Minnesota.

View Article and Find Full Text PDF
June 2018

Draft Genomic Sequencing of Six Potential Extraintestinal Pathogenic Escherichia coli Isolates from Retail Chicken Meat.

Authors:
Aixia Xu James R Johnson Shiowshuh Sheen David S Needleman Christopher Sommers

Genome Announc 2018 May 24;6(21). Epub 2018 May 24.

U.S. Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center, Wyndmoor, Pennsylvania, USA

View Article and Find Full Text PDF
May 2018

Contribution of yersiniabactin to the virulence of an Escherichia coli sequence type 69 ("clonal group A") cystitis isolate in murine models of urinary tract infection and sepsis.

Authors:
James R Johnson Giuseppe Magistro Connie Clabots Stephen Porter Amee Manges Paul Thuras Sören Schubert

Microb Pathog 2018 Jul 24;120:128-131. Epub 2018 Apr 24.

Max von Pettenkofer-Institut, Ludwig-Maximilians-University of Munich, Marchioninistrasse 17, 81377 Munich, Germany.

View Article and Find Full Text PDF
July 2018

Draft Genome Sequences of Five Neonatal Meningitis-Causing Escherichia coli Isolates (SP-4, SP-5, SP-13, SP-46, and SP-65).

Authors:
Aixia Xu James R Johnson Shiowshuh Sheen Christopher Sommers

Genome Announc 2018 Apr 19;6(16). Epub 2018 Apr 19.

U.S. Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center, Wyndmoor, Pennsylvania, USA

View Article and Find Full Text PDF
April 2018

Molecular Epidemiology of Extraintestinal Pathogenic .

Authors:
James R Johnson Thomas A Russo

EcoSal Plus 2018 04;8(1)

VA Western New York Healthcare System, Department of Medicine, Department of Microbiology and Immunology, Witebsky Center for Microbial Pathogenesis and Immunology, University of Buffalo, Buffalo, NY 14214.

View Article and Find Full Text PDF
April 2018

Effects of a Single Intra-Articular Injection of a Microsphere Formulation of Triamcinolone Acetonide on Knee Osteoarthritis Pain: A Double-Blinded, Randomized, Placebo-Controlled, Multinational Study.

Authors:
Philip G Conaghan David J Hunter Stanley B Cohen Virginia B Kraus Francis Berenbaum Jay R Lieberman Deryk G Jones Andrew I Spitzer David S Jevsevar Nathaniel P Katz Diane J Burgess Joelle Lufkin James R Johnson Neil Bodick

J Bone Joint Surg Am 2018 Apr;100(8):666-677

Clinical Operations (J.L.) and Clinical Research and Medical Affairs (N.B.), Flexion Therapeutics, Inc., Burlington, Massachusetts.

View Article and Find Full Text PDF
April 2018

Alpha-Toxin Contributes to Biofilm Formation among Staphylococcus aureus Wound Isolates.

Authors:
Michele J Anderson Emily Schaaf Laura M Breshears Heidi W Wallis James R Johnson Christine Tkaczyk Bret R Sellman Jisun Sun Marnie L Peterson

Toxins (Basel) 2018 04 16;10(4). Epub 2018 Apr 16.

Experimental and Clinical Pharmacology, College of Pharmacy, University of Minnesota, Minneapolis, MN 55455, USA.

View Article and Find Full Text PDF
April 2018

Acute Pyelonephritis in Adults.

Authors:
James R Johnson Thomas A Russo

N Engl J Med 2018 03;378(12):1162

University of Buffalo, State University of New York, Buffalo, NY

View Article and Find Full Text PDF
March 2018

Resident Physician Knowledge of Urine Testing and Treatment Over Four Years.

Authors:
Shannon L Andrews Lilian M Abbo James R Johnson Michael A Kuskowski Bhavarth S Shukla Dimitri M Drekonja

Infect Control Hosp Epidemiol 2018 05 28;39(5):616-618. Epub 2018 Feb 28.

1Minneapolis Veterans Affairs Health Care System,Minneapolis,Minnesota.

View Article and Find Full Text PDF
May 2018

Confusion and Bacteriuria in Long-Term Care Facility Residents.

Authors:
James R Johnson

J Am Geriatr Soc 2018 07 23;66(6):1235. Epub 2018 Feb 23.

VA Medical Center, Minneapolis, MN, University of Minnesota, Minneapolis, MN.

View Article and Find Full Text PDF
July 2018

Asymptomatic Bacteriuria.

Authors:
James R Johnson

Clin Infect Dis 2018 05;66(11):1816-1817

VA Medical Center, Minneapolis.

View Article and Find Full Text PDF
May 2018

Acute Pyelonephritis in Adults.

Authors:
James R Johnson Thomas A Russo

N Engl J Med 2018 01;378(1):48-59

From Minneapolis Veterans Affairs (VA) Health Care System and the University of Minnesota, Minneapolis (J.R.J.); and the University of Buffalo, State University of New York, and VA Western New York Health Care System, Buffalo (T.A.R.).

View Article and Find Full Text PDF
January 2018

Delirium in Hospitalized Older Adults.

Authors:
James R Johnson

N Engl J Med 2018 01;378(1):96

Veterans Affairs Medical Center, Minneapolis, MN

View Article and Find Full Text PDF
January 2018

Virulence genes and subclone status as markers of experimental virulence in a murine sepsis model among Escherichia coli sequence type 131 clinical isolates from Spain.

Authors:
Irene Merino Stephen B Porter Brian D Johnston Connie Clabots Evelyn Shaw Juan Pablo Horcajada Rafael Cantón Patricia Ruiz-Garbajosa James R Johnson

PLoS One 2017 30;12(11):e0188838. Epub 2017 Nov 30.

Minneapolis Veterans Health Care System, Minneapolis, MN, United States of America.

View Article and Find Full Text PDF
December 2017

Brief Report: A Phase IIb Trial of a Novel Extended-Release Microsphere Formulation of Triamcinolone Acetonide for Intraarticular Injection in Knee Osteoarthritis.

Authors:
Philip G Conaghan Stanley B Cohen Francis Berenbaum Joelle Lufkin James R Johnson Neil Bodick

Arthritis Rheumatol 2018 02 20;70(2):204-211. Epub 2017 Dec 20.

Flexion Therapeutics, Burlington, Massachusetts.

View Article and Find Full Text PDF
February 2018

Phylogenetic Backgrounds and Virulence-Associated Traits of Escherichia coli Isolates from Surface Waters and Diverse Animals in Minnesota and Wisconsin.

Authors:
James R Johnson Brian D Johnston Parissa Delavari Paul Thuras Connie Clabots Michael J Sadowsky

Appl Environ Microbiol 2017 Dec 1;83(24). Epub 2017 Dec 1.

Department of Soil, Water and Climate, Department of Plant and Microbial Biology, and the BioTechnology Institute, University of Minnesota, St. Paul, Minnesota, USA.

View Article and Find Full Text PDF
December 2017

Injectable In Situ Forming Depot Systems for Long-Acting Contraception.

Authors:
Dileep R Janagam Suryatheja Ananthula Kamaljit Chaudhry Linfeng Wu Timothy D Mandrell James R Johnson Tao L Lowe

Adv Biosyst 2017 Oct 25;1(10):e1700097. Epub 2017 Aug 25.

Department of Pharmaceutical Sciences, University of Tennessee Health Science Center, Memphis, TN, 38163, USA.

View Article and Find Full Text PDF
October 2017

Ethanol Stimulates Locomotion via a G-Signaling Pathway in IL2 Neurons in .

Authors:
James R Johnson Mark R Edwards Huw Davies Daniel Newman Whitney Holden Rosalind E Jenkins Robert D Burgoyne Robert J Lucas Jeff W Barclay

Genetics 2017 11 26;207(3):1023-1039. Epub 2017 Sep 26.

The Physiological Laboratory, Institute of Translational Medicine, University of Liverpool, L69 3BX, UK

View Article and Find Full Text PDF
November 2017

Measurement of gut permeability using fluorescent tracer agent technology.

Authors:
Richard B Dorshow Carla Hall-Moore Nurmohammad Shaikh Michael R Talcott William A Faubion Thomas E Rogers Jeng Jong Shieh Martin P Debreczeny James R Johnson Roy B Dyer Ravinder J Singh Phillip I Tarr

Sci Rep 2017 09 7;7(1):10888. Epub 2017 Sep 7.

Department of Pediatrics, Washington University in St. Louis School of Medicine, St. Louis, MO, USA.

View Article and Find Full Text PDF
September 2017

Leaf LIMS: A Flexible Laboratory Information Management System with a Synthetic Biology Focus.

Authors:
Thomas Craig Richard Holland Rosalinda D'Amore James R Johnson Hannah V McCue Anthony West Valentin Zulkower Hille Tekotte Yizhi Cai Daniel Swan Robert P Davey Christiane Hertz-Fowler Anthony Hall Mark Caddick

ACS Synth Biol 2017 12 13;6(12):2273-2280. Epub 2017 Sep 13.

GeneMill, University of Liverpool , Liverpool L69 7ZB, U.K.

View Article and Find Full Text PDF
December 2017

Treatment of ED patients with bacteriuria/pyuria of clinically undetermined significance.

Authors:
James R Johnson

Am J Emerg Med 2017 10 17;35(10):1561. Epub 2017 Jul 17.

VA Medical Center and Department of Medicine, University of Minnesota, Minneapolis, MN, United States. Electronic address:

View Article and Find Full Text PDF
October 2017

Evaluation of Escherichia coli isolates from healthy chickens to determine their potential risk to poultry and human health.

Authors:
Zachary R Stromberg James R Johnson John M Fairbrother Jacquelyn Kilbourne Angelica Van Goor Roy Curtiss Melha Mellata

PLoS One 2017 3;12(7):e0180599. Epub 2017 Jul 3.

Department of Food Science and Human Nutrition, Iowa State University, Ames, Iowa, United States of America.

View Article and Find Full Text PDF
October 2017

The Pandemic 30 Subclone of Sequence Type 131 (ST131) as the Leading Cause of Multidrug-Resistant Infections in the United States (2011-2012).

Authors:
James R Johnson Stephen Porter Paul Thuras Mariana Castanheira

Open Forum Infect Dis 2017 2;4(2):ofx089. Epub 2017 May 2.

JMI Laboratories, North Liberty, Iowa.

View Article and Find Full Text PDF
May 2017

Fine-Scale Structure Analysis Shows Epidemic Patterns of Clonal Complex 95, a Cosmopolitan Lineage Responsible for Extraintestinal Infection.

Authors:
David M Gordon Sarah Geyik Olivier Clermont Claire L O'Brien Shiwei Huang Charmalie Abayasekara Ashwin Rajesh Karina Kennedy Peter Collignon Paul Pavli Christophe Rodriguez Brian D Johnston James R Johnson Jean-Winoc Decousser Erick Denamur

mSphere 2017 May-Jun;2(3). Epub 2017 May 31.

UMR 1137 INSERM and Université Paris Diderot, IAME, Sorbonne Paris Cité, Paris, France.

View Article and Find Full Text PDF
May 2017

Genomic Analysis of Multidrug-Resistant Escherichia coli from North Carolina Community Hospitals: Ongoing Circulation of CTX-M-Producing ST131-30Rx and ST131-30R1 Strains.

Authors:
Hajime Kanamori Christian M Parobek Jonathan J Juliano James R Johnson Brian D Johnston Timothy J Johnson David J Weber William A Rutala Deverick J Anderson

Antimicrob Agents Chemother 2017 08 25;61(8). Epub 2017 Jul 25.

Division of Infectious Diseases, Duke University Medical Center, Durham, North Carolina, USA.

View Article and Find Full Text PDF
August 2017

Epidemic Emergence in the United States of Escherichia coli Sequence Type 131-30 (ST131-30), 2000 to 2009.

Authors:
James R Johnson Stephen Porter Paul Thuras Mariana Castanheira

Antimicrob Agents Chemother 2017 08 25;61(8). Epub 2017 Jul 25.

JMI Laboratories, North Liberty, Iowa, USA.

View Article and Find Full Text PDF
August 2017

Comparative Sensitivity of Transthoracic and Transesophageal Echocardiography in Diagnosis of Infective Endocarditis Among Veterans With Bacteremia.

Authors:
Poorani Sekar James R Johnson Joseph R Thurn Dimitri M Drekonja Vicki A Morrison Yellapragada Chandrashekhar Selcuk Adabag Michael A Kuskowski Gregory A Filice

Open Forum Infect Dis 2017 22;4(2):ofx035. Epub 2017 Feb 22.

Veterans Affairs Health Care System, Minneapolis, Minnesota; University of Minnesota, Minneapolis.

View Article and Find Full Text PDF
February 2017

Inactivation of Transcriptional Regulators during Within-Household Evolution of Escherichia coli.

Authors:
Dagmara I Kisiela Matthew Radey Sandip Paul Stephen Porter Kseniya Polukhina Veronika Tchesnokova Sofiya Shevchenko Diana Chan Maliha Aziz Timothy J Johnson Lance B Price James R Johnson Evgeni V Sokurenko

J Bacteriol 2017 07 13;199(13). Epub 2017 Jun 13.

Department of Microbiology, University of Washington, Seattle, Washington, USA

View Article and Find Full Text PDF
July 2017

Genomic Analysis of Factors Associated with Low Prevalence of Antibiotic Resistance in Extraintestinal Pathogenic Sequence Type 95 Strains.

Authors:
Craig M Stephens Sheila Adams-Sapper Manraj Sekhon James R Johnson Lee W Riley

mSphere 2017 Mar-Apr;2(2). Epub 2017 Apr 5.

Division of Infectious Diseases and Vaccinology, School of Public Health, University of California, Berkeley, California, USA.

View Article and Find Full Text PDF
April 2017

Gram-Negative Bacterial Infections: Research Priorities, Accomplishments, and Future Directions of the Antibacterial Resistance Leadership Group.

Authors:
Yohei Doi Robert A Bonomo David C Hooper Keith S Kaye James R Johnson Cornelius J Clancy Joshua T Thaden Martin E Stryjewski David van Duin

Clin Infect Dis 2017 Mar;64(suppl_1):S30-S35

Division of Infectious Diseases, University of North Carolina School of Medicine, Chapel Hill.

View Article and Find Full Text PDF
March 2017

Bacterial clonal diagnostics as a tool for evidence-based empiric antibiotic selection.

Authors:
Veronika Tchesnokova Hovhannes Avagyan Elena Rechkina Diana Chan Mariya Muradova Helen Ghirmai Haile Matthew Radey Scott Weissman Kim Riddell Delia Scholes James R Johnson Evgeni V Sokurenko

PLoS One 2017 28;12(3):e0174132. Epub 2017 Mar 28.

Department of Microbiology, University of Washington School of Medicine, Seattle, WA, United States of America.

View Article and Find Full Text PDF
August 2017

Acute Pancreatitis.

Authors:
James R Johnson

N Engl J Med 2017 02;376(6):598

Veterans Affairs Medical Center, Minneapolis, MN

View Article and Find Full Text PDF
February 2017

Clonal distribution and associated characteristics of Escherichia coli clinical and surveillance isolates from a military medical center.

Authors:
Amee R Manges Katrin Mende Clinton K Murray Brian D Johnston Evgeni V Sokurenko Veronika Tchesnokova James R Johnson

Diagn Microbiol Infect Dis 2017 Apr 20;87(4):382-385. Epub 2017 Jan 20.

Minneapolis Veterans Health Care System, Minneapolis, Minnesota, USA; Department of Medicine, University of Minnesota, Minneapolis, MN, USA. Electronic address:

View Article and Find Full Text PDF
April 2017

Rapid and Specific Detection of the Escherichia coli Sequence Type 648 Complex within Phylogroup F.

Authors:
James R Johnson Brian D Johnston David M Gordon

J Clin Microbiol 2017 04 18;55(4):1116-1121. Epub 2017 Jan 18.

Australian National University, Canberra, Australia.

View Article and Find Full Text PDF
April 2017

Extraintestinal Pathogenic and Antimicrobial-Resistant Escherichia coli, Including Sequence Type 131 (ST131), from Retail Chicken Breasts in the United States in 2013.

Authors:
James R Johnson Stephen B Porter Brian Johnston Paul Thuras Sarah Clock Michael Crupain Urvashi Rangan

Appl Environ Microbiol 2017 03 2;83(6). Epub 2017 Mar 2.

Food Safety and Sustainability Center, Consumer Reports, Yonkers, New York, USA.

View Article and Find Full Text PDF
March 2017

Definition of Complicated Urinary Tract Infection.

Authors:
James R Johnson

Clin Infect Dis 2017 02;64(4):529

VA Medical Center and University of Minnesota, Minneapolis, USA.

View Article and Find Full Text PDF
February 2017

Bacteriuria/Pyuria of Clinically Undetermined Significance (BPCUS): Common, but Currently Nameless.

Authors:
James R Johnson Dimitri M Drekonja

Am J Med 2017 05 21;130(5):e201-e204. Epub 2016 Dec 21.

Infectious Diseases Section, Minneapolis VA Health Care System, Minn; Infectious Diseases Division, Department of Medicine, University of Minnesota, Minneapolis.

View Article and Find Full Text PDF
May 2017

Definitions of Complicated Urinary Tract Infection and Pyelonephritis.

Authors:
James R Johnson

Clin Infect Dis 2017 02 24;64(3):390. Epub 2016 Oct 24.

Veterans Affairs Medical Center and University of Minnesota, Minneapolis

View Article and Find Full Text PDF
February 2017

Epidemiology and characteristics of Escherichia coli sequence type 131 (ST131) from long-term care facility residents colonized intestinally with fluoroquinolone-resistant Escherichia coli.

Authors:
Jennifer H Han Charles Garrigan Brian Johnston Irving Nachamkin Connie Clabots Warren B Bilker Evelyn Santana Pam Tolomeo Joel Maslow Janice Myers Lesley Carson Ebbing Lautenbach James R Johnson

Diagn Microbiol Infect Dis 2017 Mar 28;87(3):275-280. Epub 2016 Nov 28.

Minneapolis Veterans Affairs Medical Center, Minneapolis, MN; Department of Medicine, University of Minnesota, Minneapolis, MN.

View Article and Find Full Text PDF
March 2017

Sequence Type 131 30 Is the Main Driver of Emerging Extended-Spectrum-β-Lactamase-Producing . at a Tertiary Care Center.

Authors:
James R Johnson Brian Johnston Paul Thuras Bryn Launer Evgeni V Sokurenko Loren G Miller

mSphere 2016 Nov-Dec;1(6). Epub 2016 Nov 23.

Los Angeles BioMedical Research Center at Harbor-Harbor-UCLA Medical Center, Torrance, California, USA; University of California, Los Angeles, California, USA.

View Article and Find Full Text PDF
November 2016

First detection of extended-spectrum cephalosporin- and fluoroquinolone-resistant Escherichia coli in Australian food-producing animals.

Authors:
Sam Abraham David Jordan Hui S Wong James R Johnson Mark A Toleman David L Wakeham David M Gordon John D Turnidge Joanne L Mollinger Justine S Gibson Darren J Trott

J Glob Antimicrob Resist 2015 Dec 28;3(4):273-277. Epub 2015 Sep 28.

School of Animal and Veterinary Sciences, University of Adelaide, Adelaide, SA, Australia.

View Article and Find Full Text PDF
December 2015

The Niche for Sequence Type 131 Among Veterans: Urinary Tract Abnormalities and Long-Term Care Facilities.

Authors:
Dimitri M Drekonja Michael A Kuskowski Ruth Anway Brian D Johnston James R Johnson

Open Forum Infect Dis 2016 Sep 4;3(3):ofw138. Epub 2016 Jul 4.

Infectious Diseases Section; Research Service, Minneapolis Veterans Affairs Healthcare System, Minnesota.

View Article and Find Full Text PDF
September 2016

Household Clustering of Sequence Type 131 Clinical and Fecal Isolates According to Whole Genome Sequence Analysis.

Authors:
James R Johnson Gregg Davis Connie Clabots Brian D Johnston Stephen Porter Chitrita DebRoy William Pomputius Peter T Ender Michael Cooperstock Billie Savvas Slater Ritu Banerjee Sybille Miller Dagmara Kisiela Evgeni V Sokurenko Maliha Aziz Lance B Price

Open Forum Infect Dis 2016 Sep 16;3(3):ofw129. Epub 2016 Jun 16.

George Washington University , Washington, District of Columbia.

View Article and Find Full Text PDF
September 2016

Phylogenetic diversity, antimicrobial susceptibility and virulence characteristics of phylogroup F Escherichia coli in Australia.

Authors:
Belinda Vangchhia Sam Abraham Jan M Bell Peter Collignon Justine S Gibson Paul R Ingram James R Johnson Karina Kennedy Darren J Trott John D Turnidge David M Gordon

Microbiology (Reading) 2016 11 22;162(11):1904-1912. Epub 2016 Sep 22.

Evolution, Ecology and Genetics, Research School of Biology, Australian National University, 116 Daley Road, Acton, Australian Capital Territory 2601, Australia.

View Article and Find Full Text PDF
November 2016

An Accelerated Release Study to Evaluate Long-Acting Contraceptive Levonorgestrel-Containing in Situ Forming Depot Systems.

Authors:
Dileep R Janagam Lizhu Wang Suryatheja Ananthula James R Johnson Tao L Lowe

Pharmaceutics 2016 Sep 1;8(3). Epub 2016 Sep 1.

Department of Pharmaceutical Sciences, University of Tennessee Health Sciences Center, Memphis, TN 38163, USA.

View Article and Find Full Text PDF
September 2016

Separate F-Type Plasmids Have Shaped the Evolution of the H30 Subclone of Escherichia coli Sequence Type 131.

Authors:
Timothy J Johnson Jessica L Danzeisen Bonnie Youmans Kyle Case Katharine Llop Jeannette Munoz-Aguayo Cristian Flores-Figueroa Maliha Aziz Nicole Stoesser Evgeni Sokurenko Lance B Price James R Johnson

mSphere 2016 Jul-Aug;1(4). Epub 2016 Jun 29.

Minneapolis Veterans Health Care System, Minneapolis, Minnesota, USA; Department of Medicine, University of Minnesota, Minneapolis, Minnesota, USA.

View Article and Find Full Text PDF
July 2016

GeneMill: A 21st century platform for innovation.

Authors:
James R Johnson Rosalinda D'Amore Simon C Thain Thomas Craig Hannah V McCue Christiane Hertz-Fowler Neil Hall Anthony J W Hall

Biochem Soc Trans 2016 06;44(3):681-3

GeneMill, Institute of Integrative Biology, University of Liverpool, Liverpool, L69 7ZB, U.K.

View Article and Find Full Text PDF
June 2016

Isolation and Characterization of Escherichia coli Sequence Type 131 and Other Antimicrobial-Resistant Gram-Negative Bacilli from Clinical Stool Samples from Veterans.

Authors:
Muhanad Mohamed Connie Clabots Stephen B Porter Paul Thuras James R Johnson

Antimicrob Agents Chemother 2016 08 22;60(8):4638-45. Epub 2016 Jul 22.

University of Minnesota, Minneapolis, Minnesota, USA Veterans Affairs Medical Center, Minneapolis, Minnesota, USA.

View Article and Find Full Text PDF
August 2016

Complete Genome Sequence of a CTX-M-15-Producing Escherichia coli Strain from the H30Rx Subclone of Sequence Type 131 from a Patient with Recurrent Urinary Tract Infections, Closely Related to a Lethal Urosepsis Isolate from the Patient's Sister.

Authors:
Timothy J Johnson Maliha Aziz Cindy M Liu Evgeni Sokurenko Dagmara I Kisiela Sandip Paul Paal Andersen James R Johnson Lance B Price

Genome Announc 2016 May 12;4(3). Epub 2016 May 12.

Department of Environmental and Occupational Health, George Washington University, Washington, District of Columbia, USA Division of Pathogen Genomics, Translational Genomics Research Institute (TGen), Flagstaff, Arizona, USA.

View Article and Find Full Text PDF
May 2016

The Pandemic H30 Subclone of Escherichia coli Sequence Type 131 Is Associated With Persistent Infections and Adverse Outcomes Independent From Its Multidrug Resistance and Associations With Compromised Hosts.

Authors:
James R Johnson Paul Thuras Brian D Johnston Scott J Weissman Ajit P Limaye Kim Riddell Delia Scholes Veronika Tchesnokova Evgeni Sokurenko

Clin Infect Dis 2016 06 29;62(12):1529-1536. Epub 2016 Mar 29.

University of Washington.

View Article and Find Full Text PDF
June 2016

Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131.

Authors:
Nicole Stoesser Anna E Sheppard Louise Pankhurst Nicola De Maio Catrin E Moore Robert Sebra Paul Turner Luke W Anson Andrew Kasarskis Elizabeth M Batty Veronica Kos Daniel J Wilson Rattanaphone Phetsouvanh David Wyllie Evgeni Sokurenko Amee R Manges Timothy J Johnson Lance B Price Timothy E A Peto James R Johnson Xavier Didelot A Sarah Walker Derrick W Crook

mBio 2016 Mar 22;7(2):e02162. Epub 2016 Mar 22.

Modernizing Medical Microbiology Consortium, Nuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford, United Kingdom.

View Article and Find Full Text PDF
March 2016

A Novel 7-Single Nucleotide Polymorphism-Based Clonotyping Test Allows Rapid Prediction of Antimicrobial Susceptibility of Extraintestinal Escherichia coli Directly From Urine Specimens.

Authors:
Veronika Tchesnokova Hovhannes Avagyan Mariya Billig Sujay Chattopadhyay Pavel Aprikian Diana Chan Julietta Pseunova Elena Rechkina Kim Riddell Delia Scholes Ferric C Fang James R Johnson Evgeni V Sokurenko

Open Forum Infect Dis 2016 Jan 18;3(1):ofw002. Epub 2016 Jan 18.

Departments of Microbiology.

View Article and Find Full Text PDF
January 2016

Environmental Contamination in Households of Patients with Recurrent Clostridium difficile Infection.

Authors:
Megan K Shaughnessy Aleh Bobr Michael A Kuskowski Brian D Johnston Michael J Sadowsky Alexander Khoruts James R Johnson

Appl Environ Microbiol 2016 May 18;82(9):2686-2692. Epub 2016 Apr 18.

Department of Medicine, Division of Infectious Diseases, University of Minnesota, Minneapolis, Minnesota, USA

View Article and Find Full Text PDF
May 2016

Changes in Colonic Bile Acid Composition following Fecal Microbiota Transplantation Are Sufficient to Control Clostridium difficile Germination and Growth.

Authors:
Alexa R Weingarden Peter I Dosa Erin DeWinter Clifford J Steer Megan K Shaughnessy James R Johnson Alexander Khoruts Michael J Sadowsky

PLoS One 2016 20;11(1):e0147210. Epub 2016 Jan 20.

The BioTechnology Institute, University of Minnesota, St. Paul, Minnesota, United States of America.

View Article and Find Full Text PDF
August 2016