Publications by authors named "James Haile"

47Publications

Unraveling elephant-shrews: Phylogenetic relationships and unexpected introgression among giant sengis.

Mol Phylogenet Evol 2021 Jan 29;154:107001. Epub 2020 Oct 29.

Globe Institute, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen K, Denmark. Electronic address:

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January 2021

A mitochondrial genetic divergence proxy predicts the reproductive compatibility of mammalian hybrids.

Proc Biol Sci 2020 06 3;287(1928):20200690. Epub 2020 Jun 3.

Palaeogenomics and Bio-Archaeology Research Network, Research Laboratory for Archaeology and the History of Art, University of Oxford, Oxford OX1 3QY, UK.

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June 2020

Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe.

Authors:
Laurent A F Frantz James Haile Audrey T Lin Amelie Scheu Christina Geörg Norbert Benecke Michelle Alexander Anna Linderholm Victoria E Mullin Kevin G Daly Vincent M Battista Max Price Kurt J Gron Panoraia Alexandri Rose-Marie Arbogast Benjamin Arbuckle Adrian Bӑlӑşescu Ross Barnett László Bartosiewicz Gennady Baryshnikov Clive Bonsall Dušan Borić Adina Boroneanţ Jelena Bulatović Canan Çakirlar José-Miguel Carretero John Chapman Mike Church Richard Crooijmans Bea De Cupere Cleia Detry Vesna Dimitrijevic Valentin Dumitraşcu Louis du Plessis Ceiridwen J Edwards Cevdet Merih Erek Aslı Erim-Özdoğan Anton Ervynck Domenico Fulgione Mihai Gligor Anders Götherström Lionel Gourichon Martien A M Groenen Daniel Helmer Hitomi Hongo Liora K Horwitz Evan K Irving-Pease Ophélie Lebrasseur Joséphine Lesur Caroline Malone Ninna Manaseryan Arkadiusz Marciniak Holley Martlew Marjan Mashkour Roger Matthews Giedre Motuzaite Matuzeviciute Sepideh Maziar Erik Meijaard Tom McGovern Hendrik-Jan Megens Rebecca Miller Azadeh Fatemeh Mohaseb Jörg Orschiedt David Orton Anastasia Papathanasiou Mike Parker Pearson Ron Pinhasi Darko Radmanović François-Xavier Ricaut Mike Richards Richard Sabin Lucia Sarti Wolfram Schier Shiva Sheikhi Elisabeth Stephan John R Stewart Simon Stoddart Antonio Tagliacozzo Nenad Tasić Katerina Trantalidou Anne Tresset Cristina Valdiosera Youri van den Hurk Sophie Van Poucke Jean-Denis Vigne Alexander Yanevich Andrea Zeeb-Lanz Alexandros Triantafyllidis M Thomas P Gilbert Jörg Schibler Peter Rowley-Conwy Melinda Zeder Joris Peters Thomas Cucchi Daniel G Bradley Keith Dobney Joachim Burger Allowen Evin Linus Girdland-Flink Greger Larson

Proc Natl Acad Sci U S A 2019 08 12;116(35):17231-17238. Epub 2019 Aug 12.

The Palaeogenomics & Bio-Archaeology Research Network, Research Laboratory for Archaeology and History of Art, University of Oxford, Oxford OX1 3TG, United Kingdom;

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August 2019

Hybridization between two high Arctic cetaceans confirmed by genomic analysis.

Sci Rep 2019 06 20;9(1):7729. Epub 2019 Jun 20.

Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350, København K, Denmark.

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June 2019

Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation.

BMC Evol Biol 2016 10 26;16(1):230. Epub 2016 Oct 26.

Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA, 95064, USA.

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October 2016

Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes.

Mol Ecol Resour 2017 Mar 7;17(2):209-220. Epub 2016 Nov 7.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350, Copenhagen K, Denmark.

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March 2017

Contact Zone of Asian and European Wild Boar at North West of Iran.

PLoS One 2016 21;11(7):e0159499. Epub 2016 Jul 21.

Department of Environmental Sciences, College of Environment, Karaj, Alborz, Iran.

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July 2017

The Evolution of Suidae.

Annu Rev Anim Biosci 2016 2;4:61-85. Epub 2015 Nov 2.

Palaeogenomics & Bio-Archaeology Research Network, Research Laboratory for Archaeology and History of Art, University of Oxford, Oxford OX1 3QY, United Kingdom; email: ;

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December 2016

Metabarcoding avian diets at airports: implications for birdstrike hazard management planning.

Investig Genet 2013 Dec 11;4(1):27. Epub 2013 Dec 11.

Australian Wildlife Forensic Services and Ancient DNA Laboratory, School of Veterinary and Life Sciences, Murdoch University, Murdoch, Western Australia 6150, Australia.

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December 2013

Scrapheap challenge: a novel bulk-bone metabarcoding method to investigate ancient DNA in faunal assemblages.

Sci Rep 2013 Nov 28;3:3371. Epub 2013 Nov 28.

1] Ancient DNA Laboratory, School of Veterinary and Life Sciences, Murdoch University, South Street, Murdoch, WA, 6150, Australia [2].

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November 2013

Who's for dinner? High-throughput sequencing reveals bat dietary differentiation in a biodiversity hotspot where prey taxonomy is largely undescribed.

Mol Ecol 2014 08 31;23(15):3605-17. Epub 2013 Oct 31.

School of Veterinary and Life Sciences, Murdoch University, 90 South Street, Murdoch, WA, 6150, Australia.

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August 2014

Molecular- and pollen-based vegetation analysis in lake sediments from central Scandinavia.

Mol Ecol 2013 Jul 15;22(13):3511-24. Epub 2013 Apr 15.

Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, 75236, Uppsala, Sweden.

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July 2013

Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from arctic permafrost.

Environ Microbiol 2013 Apr 22;15(4):1176-89. Epub 2012 Nov 22.

National Centre for Biosystematics, Natural History Museum, University of Oslo, P.O. Box 117 Blindern, NO-0318, Oslo, Norway.

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April 2013

The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils.

Proc Biol Sci 2012 Dec 10;279(1748):4724-33. Epub 2012 Oct 10.

Ancient DNA Laboratory, School of Biological Sciences and Biotechnology, Murdoch University, 90 South Street, Perth, Western Australia 6150, Australia.

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December 2012

Deep sequencing of plant and animal DNA contained within traditional Chinese medicines reveals legality issues and health safety concerns.

PLoS Genet 2012 12;8(4):e1002657. Epub 2012 Apr 12.

Australian Wildlife Forensic Services and Ancient DNA Laboratory, School of Biological Sciences and Biotechnology, Murdoch University, Murdoch, Australia.

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September 2012

Ancient DNA extraction from soils and sediments.

Authors:
James Haile

Methods Mol Biol 2012 ;840:57-63

Ancient DNA Laboratory, School of Biological Sciences and Biotechnology, Murdoch University, South Street, Perth, 6150, WA, Australia.

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May 2012

Application of STR markers in wildlife forensic casework involving Australian black-cockatoos (Calyptorhynchus spp.).

Forensic Sci Int Genet 2012 Sep 18;6(5):664-70. Epub 2011 Nov 18.

Australian Wildlife Forensic Services and Ancient DNA Laboratory, School of Biological Sciences and Biotechnology, Murdoch University, Perth, WA 6150, Australia.

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September 2012

DNA-based faecal dietary analysis: a comparison of qPCR and high throughput sequencing approaches.

PLoS One 2011 6;6(10):e25776. Epub 2011 Oct 6.

Australian Wildlife Forensic Services and Ancient DNA Laboratory, School of Biological Sciences and Biotechnology, Murdoch University, Murdoch, Western Australia, Australia.

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February 2012

Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA.

Mol Ecol 2012 Apr 12;21(8):1806-15. Epub 2011 Oct 12.

National Centre for Biosystematics, Natural History Museum, University of Oslo, Oslo, Norway.

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April 2012

Egg forensics: an appraisal of DNA sequencing to assist in species identification of illegally smuggled eggs.

Forensic Sci Int Genet 2012 Mar 7;6(2):268-73. Epub 2011 Jul 7.

Australian Wildlife Forensic Services and Ancient DNA Laboratory, School of Biological Sciences and Biotechnology, Murdoch University, South St, Murdoch, WA 6150, Australia.

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March 2012

Non-destructive sampling of ancient insect DNA.

PLoS One 2009 1;4(4):e5048. Epub 2009 Apr 1.

Centre for Ancient Genetics and Environments, Natural History Museum and Institute of Biology, University of Copenhagen, Copenhagen, Denmark.

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June 2009

The effect of inappropriate calibration: three case studies in molecular ecology.

PLoS One 2008 Feb 20;3(2):e1615. Epub 2008 Feb 20.

Department of Zoology, University of Oxford, Oxford, United Kingdom.

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February 2008

Ancient DNA chronology within sediment deposits: are paleobiological reconstructions possible and is DNA leaching a factor?

Mol Biol Evol 2007 Apr 25;24(4):982-9. Epub 2007 Jan 25.

Henry Wellcome Ancient Biomolecules Centre, Department of Zoology, University of Oxford, South Parks Road, Oxford, United Kingdom.

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April 2007

Assessing the fidelity of ancient DNA sequences amplified from nuclear genes.

Genetics 2006 Feb 19;172(2):733-41. Epub 2005 Nov 19.

Ancient DNA and Evolution Group, Centre for Ancient Genetics, Niels Bohr Institute, University of Copenhagen, Denmark.

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February 2006